Wall clock time and date at job start Tue Mar 31 2020 06:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.46838 * 2 1 4 4 C 1.36939 * 119.99709 * 273.69821 * 3 2 1 5 5 H 1.07998 * 120.00442 * 8.67239 * 4 3 2 6 6 C 1.38818 * 119.99988 * 188.67853 * 4 3 2 7 7 N 1.31617 * 119.99795 * 26.57176 * 6 4 3 8 8 Si 1.86802 * 119.99827 * 206.57602 * 6 4 3 9 9 H 1.48502 * 109.47242 * 59.99836 * 8 6 4 10 10 H 1.48499 * 109.46961 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46891 * 299.99671 * 8 6 4 12 12 C 1.46499 * 120.00619 * 93.69955 * 3 2 1 13 13 C 1.50693 * 109.47240 * 89.99468 * 12 3 2 14 14 O 1.21286 * 120.00361 * 0.02562 * 13 12 3 15 15 N 1.34781 * 120.00223 * 180.02562 * 13 12 3 16 16 C 1.39917 * 120.00117 * 185.17063 * 15 13 12 17 17 C 1.38900 * 120.07189 * 212.95482 * 16 15 13 18 18 C 1.38081 * 119.93212 * 180.02562 * 17 16 15 19 19 C 1.38309 * 120.06985 * 359.97438 * 18 17 16 20 20 C 1.38250 * 120.14168 * 0.03938 * 19 18 17 21 21 C 1.50707 * 119.96681 * 180.02562 * 20 19 18 22 22 C 1.53004 * 109.46787 * 299.95929 * 21 20 19 23 23 C 1.52996 * 109.46816 * 59.95423 * 21 20 19 24 24 C 1.38135 * 120.07459 * 359.95805 * 20 19 18 25 25 H 1.09003 * 109.46954 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47166 * 300.00142 * 1 2 3 27 27 H 1.08997 * 109.47390 * 60.00237 * 1 2 3 28 28 H 1.08996 * 109.47166 * 239.99858 * 2 1 3 29 29 H 1.08997 * 109.47390 * 119.99763 * 2 1 3 30 30 H 0.97003 * 119.99413 * 180.02562 * 7 6 4 31 31 H 1.09007 * 109.46584 * 329.99498 * 12 3 2 32 32 H 1.08997 * 109.47329 * 210.00506 * 12 3 2 33 33 H 0.97006 * 119.99626 * 5.16769 * 15 13 12 34 34 H 1.08003 * 120.03162 * 0.02562 * 17 16 15 35 35 H 1.07997 * 119.96807 * 179.97438 * 18 17 16 36 36 H 1.08000 * 119.92654 * 179.97438 * 19 18 17 37 37 H 1.09000 * 109.47354 * 179.97438 * 21 20 19 38 38 H 1.09000 * 109.47228 * 59.99856 * 22 21 20 39 39 H 1.08999 * 109.46840 * 179.97438 * 22 21 20 40 40 H 1.09000 * 109.46767 * 299.99716 * 22 21 20 41 41 H 1.09003 * 109.47359 * 60.00649 * 23 21 20 42 42 H 1.08999 * 109.47009 * 180.02562 * 23 21 20 43 43 H 1.09000 * 109.47517 * 300.00339 * 23 21 20 44 44 H 1.08000 * 120.04037 * 180.29546 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1743 2.0522 -1.1835 5 1 1.8082 1.6188 -2.1024 6 6 2.8033 3.2896 -1.2021 7 7 3.6836 3.5944 -0.2724 8 14 2.4000 4.5221 -2.5467 9 1 0.9538 4.8555 -2.4952 10 1 3.1996 5.7567 -2.3425 11 1 2.7257 3.9342 -3.8709 12 6 2.3396 2.0447 1.2660 13 6 3.7865 1.7996 1.6085 14 8 4.4811 1.1364 0.8678 15 7 4.3088 2.3173 2.7380 16 6 5.6760 2.1821 3.0026 17 6 6.1224 2.0555 4.3118 18 6 7.4724 1.9227 4.5697 19 6 8.3798 1.9152 3.5260 20 6 7.9389 2.0412 2.2218 21 6 8.9311 2.0319 1.0874 22 6 9.9129 3.1927 1.2592 23 6 9.6995 0.7089 1.0930 24 6 6.5897 2.1743 1.9570 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 4.1228 4.4592 -0.2853 31 1 1.7060 1.6439 2.0572 32 1 2.1656 3.1163 1.1690 33 1 3.7367 2.7838 3.3674 34 1 5.4142 2.0610 5.1273 35 1 7.8201 1.8247 5.5875 36 1 9.4352 1.8116 3.7304 37 1 8.4018 2.1410 0.1408 38 1 10.4422 3.0838 2.2058 39 1 10.6308 3.1857 0.4390 40 1 9.3654 4.1352 1.2553 41 1 9.0000 -0.1181 0.9706 42 1 10.4174 0.7023 0.2729 43 1 10.2288 0.6001 2.0396 44 1 6.2454 2.2680 0.9377 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299548721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:00 Heat of formation + Delta-G solvation = 6.251331 kcal Electronic energy + Delta-G solvation = -23775.156604 eV Core-core repulsion = 20499.990384 eV Total energy + Delta-G solvation = -3275.166220 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.67442 -38.03580 -35.82877 -34.97768 -33.19617 -31.89052 -29.97242 -29.38980 -28.56147 -26.96321 -26.47206 -23.73490 -22.85485 -22.33050 -20.73506 -19.69299 -19.14187 -17.09247 -16.48556 -15.82806 -15.49256 -15.11374 -14.87873 -14.14730 -13.92705 -13.65528 -13.61922 -13.28142 -13.19867 -12.93155 -12.69859 -12.35460 -12.20953 -11.90525 -11.77845 -11.69958 -11.34415 -11.24126 -11.11241 -10.96090 -10.74203 -10.51262 -10.45120 -10.36038 -10.23405 -9.93996 -9.81656 -9.41295 -8.81603 -8.36163 -8.17196 -7.32700 -6.96370 -5.86018 -3.09308 1.82051 1.95878 3.39390 3.46013 3.47395 3.93908 4.11001 4.43618 4.56008 4.97264 5.09363 5.30174 5.38543 5.42123 5.42894 5.55477 5.63424 5.75991 5.79248 5.95063 5.95926 5.96067 6.05798 6.14497 6.18813 6.24378 6.28319 6.30229 6.43846 6.44550 6.52489 6.55738 6.70025 6.82033 6.84526 7.00041 7.08017 7.09855 7.13525 7.30833 7.76544 7.78806 8.21127 8.47187 9.12222 9.56750 9.81826 10.23952 11.24775 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.015450 B = 0.005115 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.845236 B = 5473.220498 C = 6329.938981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.145 3.855 3 N -0.574 5.574 4 C -0.244 4.244 5 H 0.077 0.923 6 C -0.001 4.001 7 N -0.898 5.898 8 Si 0.900 3.100 9 H -0.286 1.286 10 H -0.293 1.293 11 H -0.285 1.285 12 C 0.165 3.835 13 C 0.525 3.475 14 O -0.508 6.508 15 N -0.692 5.692 16 C 0.178 3.822 17 C -0.173 4.173 18 C -0.106 4.106 19 C -0.152 4.152 20 C -0.062 4.062 21 C -0.058 4.058 22 C -0.140 4.140 23 C -0.140 4.140 24 C -0.114 4.114 25 H 0.038 0.962 26 H 0.043 0.957 27 H 0.053 0.947 28 H 0.045 0.955 29 H 0.036 0.964 30 H 0.254 0.746 31 H 0.039 0.961 32 H 0.104 0.896 33 H 0.397 0.603 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.079 0.921 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.626 -1.944 9.150 10.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.019 3.981 3 N -0.293 5.293 4 C -0.373 4.373 5 H 0.095 0.905 6 C -0.198 4.198 7 N -0.544 5.544 8 Si 0.730 3.270 9 H -0.213 1.213 10 H -0.219 1.219 11 H -0.212 1.212 12 C 0.034 3.966 13 C 0.313 3.687 14 O -0.379 6.379 15 N -0.337 5.337 16 C 0.082 3.918 17 C -0.194 4.194 18 C -0.124 4.124 19 C -0.171 4.171 20 C -0.063 4.063 21 C -0.076 4.076 22 C -0.197 4.197 23 C -0.197 4.197 24 C -0.134 4.134 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.121 0.879 33 H 0.230 0.770 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 6.101 -2.310 8.477 10.696 hybrid contribution -0.274 1.070 -0.328 1.152 sum 5.827 -1.239 8.149 10.094 Atomic orbital electron populations 1.22304 0.99407 0.99163 1.01520 1.20731 0.91917 0.86204 0.99266 1.43946 1.73541 1.09593 1.02223 1.19190 1.32103 0.99104 0.86925 0.90481 1.24649 0.97171 0.99515 0.98465 1.69878 1.25400 1.22051 1.37046 0.86377 0.77918 0.81111 0.81612 1.21301 1.21869 1.21175 1.20678 0.88494 1.00290 0.87116 1.22500 0.92647 0.76060 0.77526 1.90515 1.61885 1.38472 1.47017 1.44176 1.05961 1.58512 1.25095 1.17908 0.84835 0.96243 0.92843 1.20813 0.96129 1.07357 0.95137 1.20718 0.92712 1.00685 0.98321 1.20719 0.98813 1.05263 0.92288 1.19690 0.93662 0.98853 0.94046 1.20101 0.94932 0.95380 0.97196 1.21824 0.98535 0.98120 1.01236 1.21815 0.99706 0.96946 1.01240 1.21372 0.91080 1.00142 1.00846 0.94264 0.93749 0.92812 0.93665 0.94591 0.93563 0.94286 0.87870 0.76979 0.86685 0.86789 0.87096 0.90258 0.92776 0.92801 0.92575 0.92476 0.92805 0.92810 0.83546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 10.22 37.16 0.38 -2.49 16 2 C 0.15 3.03 6.39 -4.04 -0.03 3.01 16 3 N -0.57 -13.95 2.02 -174.61 -0.35 -14.30 16 4 C -0.24 -6.55 9.69 -15.06 -0.15 -6.70 16 5 H 0.08 2.06 7.96 -52.49 -0.42 1.64 16 6 C 0.00 -0.02 4.85 -17.43 -0.08 -0.10 16 7 N -0.90 -24.49 9.03 55.49 0.50 -23.99 16 8 Si 0.90 21.48 29.63 -169.99 -5.04 16.45 16 9 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 C 0.17 3.69 5.42 -5.20 -0.03 3.66 16 13 C 0.53 12.06 5.63 -10.99 -0.06 11.99 16 14 O -0.51 -13.70 13.76 5.55 0.08 -13.62 16 15 N -0.69 -13.21 5.34 -9.86 -0.05 -13.26 16 16 C 0.18 3.39 6.29 -83.69 -0.53 2.86 16 17 C -0.17 -2.71 9.96 -39.39 -0.39 -3.11 16 18 C -0.11 -1.51 10.04 -39.61 -0.40 -1.91 16 19 C -0.15 -2.26 8.71 -39.55 -0.34 -2.60 16 20 C -0.06 -1.05 4.78 -104.65 -0.50 -1.55 16 21 C -0.06 -0.87 3.09 -91.77 -0.28 -1.15 16 22 C -0.14 -1.78 9.01 37.16 0.33 -1.44 16 23 C -0.14 -1.83 9.00 37.16 0.33 -1.50 16 24 C -0.11 -2.33 8.29 -39.39 -0.33 -2.66 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 29 H 0.04 0.72 8.04 -51.93 -0.42 0.30 16 30 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.04 0.74 8.07 -51.93 -0.42 0.32 16 32 H 0.10 2.46 6.37 -51.93 -0.33 2.12 16 33 H 0.40 6.17 8.82 -40.82 -0.36 5.81 16 34 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 35 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.11 1.39 7.09 -52.49 -0.37 1.02 16 37 H 0.08 1.34 7.87 -51.93 -0.41 0.93 16 38 H 0.05 0.62 7.38 -51.93 -0.38 0.23 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.63 7.38 -51.93 -0.38 0.25 16 44 H 0.15 3.62 6.26 -52.49 -0.33 3.29 16 LS Contribution 357.21 15.07 5.38 5.38 Total: -1.00 -30.68 357.21 -8.73 -39.41 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -7.18 Total: 7.62 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -2.07 Total: -3.69 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: 0.10 Total: -51.55 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.08 Total: -13.62 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.04 Total: 16.45 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.68 -8.73 -39.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299548721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.665 kcal (2) G-P(sol) polarization free energy of solvation -30.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds