Wall clock time and date at job start Tue Mar 31 2020 06:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47412 * 2 1 4 4 N 1.46891 * 109.47386 * 180.77856 * 3 2 1 5 5 C 1.46904 * 111.00122 * 299.20588 * 4 3 2 6 6 C 1.50701 * 109.46691 * 293.95056 * 5 4 3 7 7 H 1.08007 * 120.00081 * 355.02212 * 6 5 4 8 8 C 1.37875 * 119.99974 * 175.02264 * 6 5 4 9 9 N 1.31521 * 119.99941 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00036 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47150 * 60.00475 * 10 8 6 12 12 H 1.48504 * 109.46933 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47250 * 300.00148 * 10 8 6 14 14 C 1.46905 * 110.99929 * 63.15784 * 4 3 2 15 15 C 1.50697 * 109.47283 * 66.04800 * 14 4 3 16 16 C 1.38664 * 120.79169 * 90.00090 * 15 14 4 17 17 C 1.38187 * 119.16448 * 179.72503 * 16 15 14 18 18 N 1.31881 * 120.76465 * 359.97438 * 17 16 15 19 19 C 1.31862 * 121.72518 * 0.02562 * 18 17 16 20 20 C 1.50696 * 119.61539 * 180.02562 * 19 18 17 21 21 C 1.52996 * 109.47302 * 254.99663 * 20 19 18 22 22 C 1.52999 * 109.47642 * 15.00045 * 20 19 18 23 23 C 1.53009 * 109.46919 * 134.99920 * 20 19 18 24 24 C 1.38225 * 120.76379 * 0.02562 * 19 18 17 25 25 H 1.08999 * 109.47274 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47188 * 299.99967 * 1 2 3 27 27 H 1.09000 * 109.47100 * 59.99895 * 1 2 3 28 28 H 1.09004 * 109.46719 * 240.00238 * 2 1 3 29 29 H 1.09001 * 109.47313 * 120.00613 * 2 1 3 30 30 H 1.08999 * 109.47011 * 60.77512 * 3 2 1 31 31 H 1.09007 * 109.47005 * 300.78121 * 3 2 1 32 32 H 1.08993 * 109.46845 * 53.94910 * 5 4 3 33 33 H 1.08997 * 109.47130 * 173.95384 * 5 4 3 34 34 H 0.96997 * 119.99642 * 179.97438 * 9 8 6 35 35 H 1.09003 * 109.47018 * 306.04100 * 14 4 3 36 36 H 1.09001 * 109.46955 * 186.04974 * 14 4 3 37 37 H 1.08002 * 120.41997 * 359.69981 * 16 15 14 38 38 H 1.07997 * 119.61898 * 179.97438 * 17 16 15 39 39 H 1.09007 * 109.47134 * 60.00197 * 21 20 19 40 40 H 1.08995 * 109.47460 * 180.02562 * 21 20 19 41 41 H 1.09004 * 109.47237 * 300.00574 * 21 20 19 42 42 H 1.08996 * 109.47038 * 59.99580 * 22 20 19 43 43 H 1.08995 * 109.47455 * 180.02562 * 22 20 19 44 44 H 1.08999 * 109.46909 * 300.00035 * 22 20 19 45 45 H 1.08998 * 109.47102 * 60.00272 * 23 20 19 46 46 H 1.09005 * 109.46858 * 179.97438 * 23 20 19 47 47 H 1.08996 * 109.47024 * 299.99968 * 23 20 19 48 48 H 1.07994 * 120.41787 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5089 1.4425 -0.0188 5 6 4.0506 0.7679 1.1684 6 6 3.7079 1.5661 2.3998 7 1 3.2148 2.5222 2.3037 8 6 4.0237 1.0759 3.6492 9 7 4.6246 -0.0882 3.7662 10 14 3.5995 2.0656 5.1756 11 1 2.1311 2.2792 5.2348 12 1 4.0416 1.3250 6.3844 13 1 4.2891 3.3797 5.1210 14 6 4.0196 0.8288 -1.2520 15 6 3.6459 1.6876 -2.4326 16 6 4.4878 2.6991 -2.8693 17 6 4.1145 3.4626 -3.9589 18 7 2.9736 3.2376 -4.5811 19 6 2.1487 2.2847 -4.1937 20 6 0.8574 2.0687 -4.9399 21 6 -0.3075 2.6155 -4.1124 22 6 0.9160 2.7992 -6.2830 23 6 0.6525 0.5718 -5.1821 24 6 2.4547 1.4815 -3.1111 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6881 1.9522 0.8968 31 1 1.6653 1.9603 -0.8830 32 1 3.6172 -0.2289 1.2492 33 1 5.1338 0.6870 1.0777 34 1 4.8471 -0.4329 4.6451 35 1 3.5837 -0.1631 -1.3716 36 1 5.1047 0.7440 -1.1932 37 1 5.4234 2.8883 -2.3639 38 1 4.7644 4.2526 -4.3050 39 1 -0.1616 3.6819 -3.9399 40 1 -1.2415 2.4589 -4.6519 41 1 -0.3493 2.0951 -3.1555 42 1 1.7459 2.4096 -6.8725 43 1 -0.0181 2.6433 -6.8225 44 1 1.0620 3.8655 -6.1105 45 1 0.6106 0.0514 -4.2253 46 1 -0.2818 0.4156 -5.7214 47 1 1.4824 0.1822 -5.7716 48 1 1.7752 0.7024 -2.7989 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232216632.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:23 Heat of formation + Delta-G solvation = 14.797538 kcal Electronic energy + Delta-G solvation = -24133.134929 eV Core-core repulsion = 20994.172394 eV Total energy + Delta-G solvation = -3138.962535 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 290.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.46532 -37.70178 -36.47365 -33.14706 -32.81722 -31.47152 -30.23731 -27.81827 -27.33303 -27.07954 -26.27516 -24.20324 -23.32073 -22.15381 -21.98274 -19.67175 -18.70770 -16.43721 -16.27387 -16.07212 -15.38904 -15.10299 -14.76376 -14.51569 -14.43796 -14.03510 -13.77763 -13.64356 -13.32047 -13.11305 -12.65470 -12.32332 -12.21944 -12.12205 -11.86178 -11.71472 -11.67327 -11.37953 -11.16690 -11.02616 -11.00945 -10.94560 -10.87552 -10.77226 -10.70163 -10.52276 -10.00170 -9.79072 -9.39112 -9.23928 -9.10121 -8.71690 -8.45121 -7.22405 -6.05230 -4.06305 1.34628 1.51781 3.31683 3.35910 3.39001 3.95629 4.25095 4.41182 4.62332 4.94037 4.94973 5.01881 5.09410 5.17594 5.30577 5.31642 5.41621 5.48121 5.49960 5.52498 5.61360 5.65751 5.71227 5.80081 5.80693 5.81496 5.86841 5.90354 6.01870 6.04715 6.09148 6.11459 6.22758 6.26392 6.29982 6.37137 6.40942 6.46963 6.66828 6.72650 6.91850 6.95276 7.25583 7.37664 7.77037 8.04086 8.14281 8.19563 8.50119 9.01253 9.57938 11.05341 Molecular weight = 290.21amu Principal moments of inertia in cm(-1) A = 0.021396 B = 0.004078 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.321941 B = 6865.116059 C = 7435.027097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.163 4.163 3 C 0.064 3.936 4 N -0.527 5.527 5 C 0.189 3.811 6 C -0.505 4.505 7 H 0.062 0.938 8 C 0.057 3.943 9 N -0.899 5.899 10 Si 0.896 3.104 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.082 3.918 15 C -0.014 4.014 16 C -0.159 4.159 17 C 0.094 3.906 18 N -0.488 5.488 19 C 0.133 3.867 20 C -0.017 4.017 21 C -0.137 4.137 22 C -0.124 4.124 23 C -0.141 4.141 24 C -0.162 4.162 25 H 0.045 0.955 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.004 0.996 33 H 0.025 0.975 34 H 0.262 0.738 35 H 0.041 0.959 36 H 0.079 0.921 37 H 0.133 0.867 38 H 0.151 0.849 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.053 0.947 43 H 0.049 0.951 44 H 0.064 0.936 45 H 0.059 0.941 46 H 0.061 0.939 47 H 0.056 0.944 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.953 1.830 -16.955 18.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.202 4.202 3 C -0.064 4.064 4 N -0.250 5.250 5 C 0.065 3.935 6 C -0.544 4.544 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.724 3.276 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.046 4.046 15 C -0.023 4.023 16 C -0.179 4.179 17 C -0.063 4.063 18 N -0.197 5.197 19 C -0.005 4.005 20 C -0.018 4.018 21 C -0.195 4.195 22 C -0.182 4.182 23 C -0.199 4.199 24 C -0.182 4.182 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.072 0.928 32 H 0.022 0.978 33 H 0.043 0.957 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.097 0.903 37 H 0.151 0.849 38 H 0.168 0.832 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.083 0.917 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.075 0.925 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.905 2.714 -17.496 19.004 hybrid contribution -0.055 -0.924 1.788 2.014 sum -6.959 1.791 -15.708 17.273 Atomic orbital electron populations 1.21653 0.96420 1.00725 1.01250 1.22174 0.95603 1.00328 1.02117 1.22088 0.88300 0.94499 1.01537 1.62396 1.06702 1.54599 1.01317 1.19809 0.94905 0.93090 0.85729 1.21078 1.38469 1.04897 0.89915 0.92014 1.24960 0.95368 0.95060 0.99064 1.69944 1.41603 1.18403 1.23917 0.86590 0.78774 0.80128 0.82107 1.20291 1.21376 1.20182 1.21111 1.00605 0.94111 0.88775 1.20378 0.92915 0.94591 0.94385 1.22032 1.01540 0.96442 0.97923 1.22630 0.93117 0.97981 0.92555 1.67404 1.03827 1.17857 1.30615 1.20982 0.94940 0.91459 0.93110 1.19440 0.90832 0.96172 0.95388 1.21870 0.96589 1.01361 0.99698 1.21649 1.00634 1.01124 0.94783 1.21941 1.01779 0.94109 1.02032 1.21835 0.97689 1.01775 0.96902 0.93542 0.92676 0.93565 0.93206 0.90411 0.90120 0.92845 0.97789 0.95707 0.92885 0.94113 0.90283 0.84877 0.83216 0.92389 0.92084 0.92264 0.92773 0.93230 0.91727 0.92163 0.92018 0.92529 0.85320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.91 37.16 0.37 -1.68 16 2 C -0.16 -2.82 5.26 -26.73 -0.14 -2.96 16 3 C 0.06 1.21 4.83 -3.83 -0.02 1.19 16 4 N -0.53 -10.90 4.69 -237.52 -1.11 -12.01 16 5 C 0.19 4.72 4.49 -4.97 -0.02 4.70 16 6 C -0.50 -13.80 8.40 -34.44 -0.29 -14.09 16 7 H 0.06 1.69 7.30 -52.48 -0.38 1.31 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.15 13.29 55.43 0.74 -25.41 16 10 Si 0.90 21.42 29.54 -169.99 -5.02 16.39 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 C 0.08 1.42 4.97 -4.97 -0.02 1.40 16 15 C -0.01 -0.22 4.90 -104.32 -0.51 -0.73 16 16 C -0.16 -2.30 9.82 -39.44 -0.39 -2.69 16 17 C 0.09 1.26 11.18 -17.55 -0.20 1.07 16 18 N -0.49 -6.99 9.03 -9.47 -0.09 -7.08 16 19 C 0.13 1.81 5.56 -82.59 -0.46 1.36 16 20 C -0.02 -0.19 0.87 -155.66 -0.14 -0.33 16 21 C -0.14 -1.43 8.41 37.16 0.31 -1.12 16 22 C -0.12 -1.29 7.81 37.16 0.29 -1.00 16 23 C -0.14 -1.36 8.08 37.16 0.30 -1.06 16 24 C -0.16 -2.31 7.06 -39.44 -0.28 -2.59 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.80 5.81 -51.93 -0.30 0.50 16 29 H 0.08 1.60 6.33 -51.93 -0.33 1.27 16 30 H 0.08 1.70 6.94 -51.93 -0.36 1.34 16 31 H 0.05 0.93 5.99 -51.92 -0.31 0.62 16 32 H 0.00 0.12 6.04 -51.93 -0.31 -0.20 16 33 H 0.02 0.66 7.93 -51.93 -0.41 0.25 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.04 0.69 6.05 -51.93 -0.31 0.38 16 36 H 0.08 1.37 7.89 -51.93 -0.41 0.96 16 37 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 38 H 0.15 1.60 8.06 -52.49 -0.42 1.17 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.73 7.85 -51.93 -0.41 0.32 16 45 H 0.06 0.59 6.70 -51.93 -0.35 0.24 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.13 1.74 6.19 -52.49 -0.32 1.42 16 LS Contribution 371.68 15.07 5.60 5.60 Total: -1.00 -29.14 371.68 -9.59 -38.74 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -8.42 Total: 0.82 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -1.29 Total: -17.05 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: -0.46 Total: -44.50 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.14 -9.59 -38.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232216632.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.534 kcal (2) G-P(sol) polarization free energy of solvation -29.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds