Wall clock time and date at job start Tue Mar 31 2020 06:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47412 * 2 1 4 4 N 1.46891 * 109.47386 * 180.77856 * 3 2 1 5 5 C 1.46904 * 111.00122 * 299.20588 * 4 3 2 6 6 C 1.50701 * 109.46691 * 293.95056 * 5 4 3 7 7 H 1.08007 * 120.00081 * 355.02212 * 6 5 4 8 8 C 1.37875 * 119.99974 * 175.02264 * 6 5 4 9 9 N 1.31521 * 119.99941 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00036 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47150 * 60.00475 * 10 8 6 12 12 H 1.48504 * 109.46933 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47250 * 300.00148 * 10 8 6 14 14 C 1.46905 * 110.99929 * 63.15784 * 4 3 2 15 15 C 1.50697 * 109.47283 * 66.04800 * 14 4 3 16 16 C 1.38664 * 120.79169 * 90.00090 * 15 14 4 17 17 C 1.38187 * 119.16448 * 179.72503 * 16 15 14 18 18 N 1.31881 * 120.76465 * 359.97438 * 17 16 15 19 19 C 1.31862 * 121.72518 * 0.02562 * 18 17 16 20 20 C 1.50696 * 119.61539 * 180.02562 * 19 18 17 21 21 C 1.52996 * 109.47302 * 254.99663 * 20 19 18 22 22 C 1.52999 * 109.47642 * 15.00045 * 20 19 18 23 23 C 1.53009 * 109.46919 * 134.99920 * 20 19 18 24 24 C 1.38225 * 120.76379 * 0.02562 * 19 18 17 25 25 H 1.08999 * 109.47274 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47188 * 299.99967 * 1 2 3 27 27 H 1.09000 * 109.47100 * 59.99895 * 1 2 3 28 28 H 1.09004 * 109.46719 * 240.00238 * 2 1 3 29 29 H 1.09001 * 109.47313 * 120.00613 * 2 1 3 30 30 H 1.08999 * 109.47011 * 60.77512 * 3 2 1 31 31 H 1.09007 * 109.47005 * 300.78121 * 3 2 1 32 32 H 1.08993 * 109.46845 * 53.94910 * 5 4 3 33 33 H 1.08997 * 109.47130 * 173.95384 * 5 4 3 34 34 H 0.96997 * 119.99642 * 179.97438 * 9 8 6 35 35 H 1.09003 * 109.47018 * 306.04100 * 14 4 3 36 36 H 1.09001 * 109.46955 * 186.04974 * 14 4 3 37 37 H 1.08002 * 120.41997 * 359.69981 * 16 15 14 38 38 H 1.07997 * 119.61898 * 179.97438 * 17 16 15 39 39 H 1.09007 * 109.47134 * 60.00197 * 21 20 19 40 40 H 1.08995 * 109.47460 * 180.02562 * 21 20 19 41 41 H 1.09004 * 109.47237 * 300.00574 * 21 20 19 42 42 H 1.08996 * 109.47038 * 59.99580 * 22 20 19 43 43 H 1.08995 * 109.47455 * 180.02562 * 22 20 19 44 44 H 1.08999 * 109.46909 * 300.00035 * 22 20 19 45 45 H 1.08998 * 109.47102 * 60.00272 * 23 20 19 46 46 H 1.09005 * 109.46858 * 179.97438 * 23 20 19 47 47 H 1.08996 * 109.47024 * 299.99968 * 23 20 19 48 48 H 1.07994 * 120.41787 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5089 1.4425 -0.0188 5 6 4.0506 0.7679 1.1684 6 6 3.7079 1.5661 2.3998 7 1 3.2148 2.5222 2.3037 8 6 4.0237 1.0759 3.6492 9 7 4.6246 -0.0882 3.7662 10 14 3.5995 2.0656 5.1756 11 1 2.1311 2.2792 5.2348 12 1 4.0416 1.3250 6.3844 13 1 4.2891 3.3797 5.1210 14 6 4.0196 0.8288 -1.2520 15 6 3.6459 1.6876 -2.4326 16 6 4.4878 2.6991 -2.8693 17 6 4.1145 3.4626 -3.9589 18 7 2.9736 3.2376 -4.5811 19 6 2.1487 2.2847 -4.1937 20 6 0.8574 2.0687 -4.9399 21 6 -0.3075 2.6155 -4.1124 22 6 0.9160 2.7992 -6.2830 23 6 0.6525 0.5718 -5.1821 24 6 2.4547 1.4815 -3.1111 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6881 1.9522 0.8968 31 1 1.6653 1.9603 -0.8830 32 1 3.6172 -0.2289 1.2492 33 1 5.1338 0.6870 1.0777 34 1 4.8471 -0.4329 4.6451 35 1 3.5837 -0.1631 -1.3716 36 1 5.1047 0.7440 -1.1932 37 1 5.4234 2.8883 -2.3639 38 1 4.7644 4.2526 -4.3050 39 1 -0.1616 3.6819 -3.9399 40 1 -1.2415 2.4589 -4.6519 41 1 -0.3493 2.0951 -3.1555 42 1 1.7459 2.4096 -6.8725 43 1 -0.0181 2.6433 -6.8225 44 1 1.0620 3.8655 -6.1105 45 1 0.6106 0.0514 -4.2253 46 1 -0.2818 0.4156 -5.7214 47 1 1.4824 0.1822 -5.7716 48 1 1.7752 0.7024 -2.7989 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232216632.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:22 Heat of formation + Delta-G solvation = -0.734095 kcal Electronic energy + Delta-G solvation = -24133.808431 eV Core-core repulsion = 20994.172394 eV Total energy + Delta-G solvation = -3139.636037 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 290.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.56646 -39.20380 -37.44158 -34.96001 -34.25707 -33.00729 -31.28730 -29.40680 -28.27052 -28.10440 -27.59872 -25.85251 -24.43527 -23.76132 -23.20278 -21.12612 -19.82124 -18.36883 -17.54270 -17.24761 -16.85797 -16.56367 -16.24459 -15.87975 -15.50798 -15.30322 -15.06781 -14.74681 -14.59360 -14.21737 -14.17427 -13.68577 -13.40742 -13.13242 -13.03850 -12.91272 -12.80498 -12.69248 -12.66089 -12.53125 -12.50422 -12.31637 -12.26577 -11.88148 -11.84272 -11.82498 -11.66059 -11.36124 -11.30942 -10.60742 -10.46524 -10.28768 -9.78755 -8.91946 -8.19252 -6.28191 0.26333 0.34827 1.40208 1.42354 1.50225 2.39947 2.84332 3.13637 3.31102 3.43900 3.68109 3.77960 4.07414 4.10663 4.12042 4.14386 4.22313 4.25433 4.32813 4.46632 4.48910 4.57982 4.68950 4.74652 4.80918 4.82926 4.86272 4.87751 4.93978 5.03244 5.04134 5.07247 5.09704 5.12903 5.17436 5.24236 5.28278 5.32728 5.41975 5.44438 5.48857 5.52858 5.57230 5.67115 5.86968 6.06768 6.32849 6.61484 6.87351 7.11660 7.40920 8.90929 Molecular weight = 290.21amu Principal moments of inertia in cm(-1) A = 0.021396 B = 0.004078 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.321941 B = 6865.116059 C = 7435.027097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.154 4.154 3 C 0.071 3.929 4 N -0.536 5.536 5 C 0.206 3.794 6 C -0.518 4.518 7 H 0.057 0.943 8 C 0.007 3.993 9 N -0.932 5.932 10 Si 0.961 3.039 11 H -0.269 1.269 12 H -0.283 1.283 13 H -0.271 1.271 14 C 0.087 3.913 15 C -0.029 4.029 16 C -0.169 4.169 17 C 0.095 3.905 18 N -0.498 5.498 19 C 0.130 3.870 20 C -0.020 4.020 21 C -0.135 4.135 22 C -0.120 4.120 23 C -0.139 4.139 24 C -0.164 4.164 25 H 0.061 0.939 26 H 0.047 0.953 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.038 0.962 30 H 0.055 0.945 31 H 0.073 0.927 32 H -0.016 1.016 33 H -0.001 1.001 34 H 0.264 0.736 35 H 0.044 0.956 36 H 0.073 0.927 37 H 0.138 0.862 38 H 0.178 0.822 39 H 0.045 0.955 40 H 0.082 0.918 41 H 0.055 0.945 42 H 0.046 0.954 43 H 0.070 0.930 44 H 0.052 0.948 45 H 0.058 0.942 46 H 0.081 0.919 47 H 0.051 0.949 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.674 2.542 -18.265 20.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.193 4.193 3 C -0.058 4.058 4 N -0.259 5.259 5 C 0.080 3.920 6 C -0.556 4.556 7 H 0.075 0.925 8 C -0.192 4.192 9 N -0.573 5.573 10 Si 0.786 3.214 11 H -0.194 1.194 12 H -0.208 1.208 13 H -0.196 1.196 14 C -0.040 4.040 15 C -0.037 4.037 16 C -0.189 4.189 17 C -0.062 4.062 18 N -0.207 5.207 19 C -0.007 4.007 20 C -0.020 4.020 21 C -0.193 4.193 22 C -0.177 4.177 23 C -0.196 4.196 24 C -0.184 4.184 25 H 0.080 0.920 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.002 0.998 33 H 0.017 0.983 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.091 0.909 37 H 0.155 0.845 38 H 0.195 0.805 39 H 0.065 0.935 40 H 0.101 0.899 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.077 0.923 46 H 0.100 0.900 47 H 0.070 0.930 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.635 3.434 -18.827 20.995 hybrid contribution 0.501 -1.131 2.097 2.435 sum -8.134 2.303 -16.729 18.744 Atomic orbital electron populations 1.21614 0.93760 1.02026 1.02056 1.22037 0.97901 0.98630 1.00734 1.22019 0.87130 0.95551 1.01053 1.62252 1.07962 1.54495 1.01182 1.19427 0.93182 0.92186 0.87202 1.21355 1.38265 1.04866 0.91162 0.92512 1.25791 0.95141 0.96028 1.02194 1.70064 1.42616 1.19931 1.24688 0.85555 0.78870 0.78675 0.78253 1.19384 1.20845 1.19583 1.21046 1.00202 0.94659 0.88115 1.20243 0.94144 0.95171 0.94179 1.22170 1.01750 0.96477 0.98517 1.23060 0.93176 0.98105 0.91823 1.67510 1.04193 1.18171 1.30854 1.21454 0.95755 0.90700 0.92835 1.19570 0.89670 0.97355 0.95443 1.21863 0.97248 1.00447 0.99738 1.21605 1.01470 1.00142 0.94498 1.21932 1.02671 0.92796 1.02216 1.21902 0.97260 1.02148 0.97090 0.92031 0.93427 0.91174 0.91961 0.94339 0.92687 0.90919 0.99841 0.98338 0.92767 0.93770 0.90866 0.84454 0.80518 0.93542 0.89875 0.92625 0.93507 0.91119 0.92907 0.92254 0.89985 0.92993 0.84551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 9.91 71.98 0.71 -2.99 16 2 C -0.15 -5.31 5.26 30.59 0.16 -5.15 16 3 C 0.07 2.68 4.83 86.30 0.42 3.09 16 4 N -0.54 -22.70 4.69 -905.38 -4.25 -26.95 16 5 C 0.21 10.72 4.49 85.56 0.38 11.10 16 6 C -0.52 -29.09 8.40 25.60 0.22 -28.88 16 7 H 0.06 3.18 7.30 -2.91 -0.02 3.16 16 8 C 0.01 0.37 5.46 84.65 0.46 0.83 16 9 N -0.93 -55.53 13.29 21.45 0.28 -55.24 16 10 Si 0.96 44.25 29.54 68.60 2.03 46.28 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 13 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 14 C 0.09 3.09 4.97 85.56 0.43 3.51 16 15 C -0.03 -0.88 4.90 -19.67 -0.10 -0.98 16 16 C -0.17 -4.76 9.82 22.36 0.22 -4.55 16 17 C 0.09 2.41 11.18 84.67 0.95 3.36 16 18 N -0.50 -13.47 9.03 -183.89 -1.66 -15.13 16 19 C 0.13 3.33 5.56 42.55 0.24 3.57 16 20 C -0.02 -0.38 0.87 -52.93 -0.05 -0.43 16 21 C -0.14 -2.45 8.41 71.98 0.61 -1.85 16 22 C -0.12 -2.21 7.81 71.98 0.56 -1.64 16 23 C -0.14 -2.29 8.08 71.99 0.58 -1.71 16 24 C -0.16 -4.45 7.06 22.36 0.16 -4.29 16 25 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.06 1.97 5.81 -2.39 -0.01 1.95 16 29 H 0.04 1.63 6.33 -2.39 -0.02 1.61 16 30 H 0.05 2.36 6.94 -2.39 -0.02 2.34 16 31 H 0.07 2.48 5.99 -2.38 -0.01 2.46 16 32 H -0.02 -0.89 6.04 -2.39 -0.01 -0.91 16 33 H 0.00 -0.08 7.93 -2.39 -0.02 -0.10 16 34 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 35 H 0.04 1.52 6.05 -2.39 -0.01 1.50 16 36 H 0.07 2.62 7.89 -2.39 -0.02 2.61 16 37 H 0.14 3.67 8.06 -2.91 -0.02 3.64 16 38 H 0.18 3.39 8.06 -2.91 -0.02 3.37 16 39 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16 41 H 0.05 1.04 8.09 -2.38 -0.02 1.02 16 42 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.05 1.09 7.85 -2.39 -0.02 1.07 16 45 H 0.06 0.99 6.70 -2.39 -0.02 0.97 16 46 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 47 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.14 3.43 6.19 -2.91 -0.02 3.41 16 Total: -1.00 -63.61 371.68 3.26 -60.35 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.91 Total: 17.68 kcal Atomic # 6 Polarization: -32.94 SS G_CDS: 5.95 Total: -27.00 kcal Atomic # 7 Polarization: -91.69 SS G_CDS: -5.62 Total: -97.32 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -63.61 3.26 -60.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232216632.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.619 kcal (2) G-P(sol) polarization free energy of solvation -63.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds