Wall clock time and date at job start Tue Mar 31 2020 06:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30849 * 1 3 3 Si 1.86799 * 119.99785 * 2 1 4 4 H 1.48495 * 109.47311 * 275.41407 * 3 2 1 5 5 H 1.48502 * 109.46969 * 35.40958 * 3 2 1 6 6 H 1.48497 * 109.47056 * 155.41119 * 3 2 1 7 7 C 1.39959 * 120.00149 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00013 * 341.79253 * 7 2 1 9 9 C 1.40908 * 119.99782 * 161.78540 * 7 2 1 10 10 C 1.40962 * 120.13112 * 330.02640 * 9 7 2 11 11 C 1.36150 * 119.90931 * 179.97438 * 10 9 7 12 12 C 1.40115 * 120.17313 * 359.97438 * 11 10 9 13 13 C 1.47804 * 119.86825 * 180.02562 * 12 11 10 14 14 C 1.39606 * 120.18411 * 310.02055 * 13 12 11 15 15 C 1.37955 * 119.91798 * 179.97438 * 14 13 12 16 16 Cl 1.73594 * 119.85608 * 179.97438 * 15 14 13 17 17 C 1.38659 * 120.29384 * 0.02562 * 15 14 13 18 18 C 1.38103 * 120.37921 * 359.68042 * 17 15 14 19 19 C 1.38791 * 120.07372 * 0.59500 * 18 17 15 20 20 N 1.39301 * 120.14629 * 179.69876 * 19 18 17 21 21 C 1.39877 * 120.25951 * 0.27585 * 12 11 10 22 22 C 1.36516 * 120.09194 * 359.44942 * 21 12 11 23 23 F 1.35091 * 120.09167 * 180.24885 * 22 21 12 24 24 H 0.97002 * 120.00114 * 0.02562 * 1 2 3 25 25 H 1.08006 * 120.04976 * 359.94952 * 10 9 7 26 26 H 1.08000 * 119.90896 * 180.02562 * 11 10 9 27 27 H 1.08005 * 120.04180 * 359.95846 * 14 13 12 28 28 H 1.08002 * 119.80796 * 180.02562 * 17 15 14 29 29 H 1.08001 * 119.96629 * 180.29946 * 18 17 15 30 30 H 0.96993 * 119.99610 * 179.73527 * 20 19 18 31 31 H 0.96996 * 119.99818 * 359.45516 * 20 19 18 32 32 H 1.08000 * 119.95390 * 179.72358 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.3755 2.1125 -1.3938 5 1 1.5016 2.6170 0.8112 6 1 3.5924 1.4099 0.5826 7 6 2.0083 -1.2121 0.0005 8 1 1.5089 -2.1239 0.2932 9 6 3.3644 -1.2427 -0.3809 10 6 3.8576 -0.3108 -1.3165 11 6 5.1689 -0.3442 -1.6814 12 6 6.0294 -1.3021 -1.1291 13 6 7.4518 -1.3318 -1.5296 14 6 7.8007 -1.3249 -2.8814 15 6 9.1300 -1.3522 -3.2491 16 17 9.5620 -1.3442 -4.9304 17 6 10.1228 -1.3872 -2.2816 18 6 9.7916 -1.3884 -0.9409 19 6 8.4590 -1.3669 -0.5536 20 7 8.1232 -1.3744 0.7983 21 6 5.5465 -2.2335 -0.2040 22 6 4.2349 -2.2063 0.1738 23 9 3.7697 -3.1027 1.0709 24 1 -0.4850 0.8401 -0.0004 25 1 3.1961 0.4285 -1.7436 26 1 5.5468 0.3701 -2.3979 27 1 7.0308 -1.2983 -3.6384 28 1 11.1610 -1.4080 -2.5783 29 1 10.5704 -1.4108 -0.1929 30 1 7.1913 -1.3554 1.0666 31 1 8.8212 -1.4026 1.4713 32 1 6.2132 -2.9725 0.2153 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243483607.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:04 Heat of formation + Delta-G solvation = -21.280051 kcal Electronic energy + Delta-G solvation = -19842.657329 eV Core-core repulsion = 16514.161266 eV Total energy + Delta-G solvation = -3328.496062 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 291.052 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -47.52365 -39.49752 -37.53182 -36.28836 -34.20627 -33.90497 -31.89565 -29.85353 -29.38927 -28.14757 -25.31479 -22.58280 -22.29470 -21.23355 -20.32566 -17.79293 -17.26905 -16.73117 -16.45990 -15.57358 -15.24662 -14.90363 -14.31604 -14.21640 -13.92860 -13.78029 -13.54120 -13.28180 -12.91250 -12.60308 -12.14212 -12.05154 -11.88106 -11.50130 -11.31392 -11.15812 -10.97632 -10.65382 -10.41988 -10.12589 -10.01307 -9.88582 -9.40107 -8.76146 -7.95985 -7.73795 -7.23611 -7.10310 -4.69969 1.39878 1.65317 2.29217 2.36575 2.48820 2.94666 3.05747 3.14319 3.76668 3.92773 4.11507 4.25889 4.98957 5.05210 5.11807 5.40165 5.57581 5.64693 5.71226 5.87088 5.99327 6.19957 6.32033 6.33974 6.43522 6.54364 6.66732 6.83618 6.88941 7.13509 7.26103 7.44185 7.54327 7.68735 7.76275 7.98519 8.07081 8.33768 8.46757 9.76670 Molecular weight = 291.05amu Principal moments of inertia in cm(-1) A = 0.021059 B = 0.004575 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.262140 B = 6118.656512 C = 6661.022536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.082 3.918 3 Si 0.915 3.085 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.242 1.242 7 C -0.422 4.422 8 H 0.098 0.902 9 C 0.069 3.931 10 C -0.223 4.223 11 C -0.055 4.055 12 C -0.174 4.174 13 C -0.061 4.061 14 C -0.066 4.066 15 C -0.090 4.090 16 Cl -0.094 7.094 17 C -0.079 4.079 18 C -0.193 4.193 19 C 0.222 3.778 20 N -0.870 5.870 21 C -0.100 4.100 22 C -0.011 4.011 23 F -0.157 7.157 24 H 0.291 0.709 25 H 0.110 0.890 26 H 0.102 0.898 27 H 0.130 0.870 28 H 0.124 0.876 29 H 0.123 0.877 30 H 0.407 0.593 31 H 0.393 0.607 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.225 0.863 -1.775 14.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.140 4.140 3 Si 0.740 3.260 4 H -0.191 1.191 5 H -0.213 1.213 6 H -0.165 1.165 7 C -0.448 4.448 8 H 0.116 0.884 9 C 0.065 3.935 10 C -0.243 4.243 11 C -0.074 4.074 12 C -0.175 4.175 13 C -0.065 4.065 14 C -0.086 4.086 15 C -0.118 4.118 16 Cl -0.066 7.066 17 C -0.098 4.098 18 C -0.216 4.216 19 C 0.116 3.884 20 N -0.410 5.410 21 C -0.120 4.120 22 C -0.031 4.031 23 F -0.136 7.136 24 H 0.102 0.898 25 H 0.127 0.873 26 H 0.120 0.880 27 H 0.148 0.852 28 H 0.142 0.858 29 H 0.141 0.859 30 H 0.239 0.761 31 H 0.220 0.780 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 13.913 0.918 -1.875 14.069 hybrid contribution 0.020 0.523 0.307 0.607 sum 13.933 1.441 -1.568 14.095 Atomic orbital electron populations 1.69685 1.08268 1.31008 1.31875 1.26291 0.94847 1.02084 0.90740 0.86235 0.81370 0.79100 0.79287 1.19111 1.21338 1.16451 1.19514 0.92891 0.96617 1.35819 0.88415 1.17762 0.93107 0.91342 0.91267 1.20537 0.95774 1.04544 1.03420 1.20463 0.93003 0.96394 0.97527 1.17541 0.90999 1.02435 1.06542 1.18235 0.92022 1.05397 0.90887 1.20950 0.93943 0.98211 0.95471 1.20450 0.94260 1.13131 0.83949 1.98317 1.93535 1.97545 1.17179 1.20616 0.98214 0.99560 0.91451 1.20338 0.93983 1.11634 0.95632 1.17932 0.92435 0.93055 0.85007 1.42701 1.11370 1.83565 1.03331 1.20353 0.93909 0.98914 0.98804 1.17316 0.92167 0.96452 0.97191 1.91323 1.89605 1.66487 1.66163 0.89805 0.87265 0.87972 0.85213 0.85843 0.85918 0.76074 0.77971 0.87346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.72 13.93 55.55 0.77 -18.95 16 2 C 0.08 2.03 5.40 -17.33 -0.09 1.94 16 3 Si 0.91 19.36 24.51 -169.99 -4.17 15.19 16 4 H -0.27 -5.40 6.71 56.52 0.38 -5.02 16 5 H -0.29 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.24 -5.22 6.87 56.52 0.39 -4.83 16 7 C -0.42 -10.93 9.23 -37.93 -0.35 -11.28 16 8 H 0.10 2.71 7.97 -52.49 -0.42 2.30 16 9 C 0.07 1.67 5.11 -106.73 -0.55 1.13 16 10 C -0.22 -4.98 7.10 -39.30 -0.28 -5.26 16 11 C -0.06 -1.11 9.43 -39.63 -0.37 -1.48 16 12 C -0.17 -3.32 5.10 -104.67 -0.53 -3.85 16 13 C -0.06 -1.02 5.48 -104.70 -0.57 -1.59 16 14 C -0.07 -1.04 9.27 -39.17 -0.36 -1.41 16 15 C -0.09 -1.28 6.31 -39.53 -0.25 -1.53 16 16 Cl -0.09 -1.23 28.94 -51.86 -1.50 -2.73 16 17 C -0.08 -1.01 9.81 -39.48 -0.39 -1.40 16 18 C -0.19 -2.45 9.88 -39.43 -0.39 -2.84 16 19 C 0.22 3.27 6.68 -83.49 -0.56 2.71 16 20 N -0.87 -11.32 8.62 32.59 0.28 -11.04 16 21 C -0.10 -2.00 7.61 -39.59 -0.30 -2.30 16 22 C -0.01 -0.26 7.26 -39.08 -0.28 -0.54 16 23 F -0.16 -3.65 16.75 2.25 0.04 -3.61 16 24 H 0.29 6.53 8.30 -40.82 -0.34 6.19 16 25 H 0.11 2.40 4.74 -52.48 -0.25 2.15 16 26 H 0.10 1.82 8.03 -52.49 -0.42 1.40 16 27 H 0.13 2.01 8.04 -52.48 -0.42 1.58 16 28 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 29 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 30 H 0.41 5.91 5.99 -40.82 -0.24 5.66 16 31 H 0.39 3.86 8.84 -40.82 -0.36 3.50 16 32 H 0.11 1.96 7.49 -52.49 -0.39 1.57 16 LS Contribution 292.60 15.07 4.41 4.41 Total: -1.00 -25.68 292.60 -7.97 -33.65 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -2.52 Total: 10.77 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: -5.28 Total: -27.69 kcal Atomic # 7 Polarization: -31.04 SS G_CDS: 1.05 Total: -29.99 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.04 Total: -3.61 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.17 Total: 15.19 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -1.50 Total: -2.73 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -25.68 -7.97 -33.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243483607.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.373 kcal (2) G-P(sol) polarization free energy of solvation -25.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds