Wall clock time and date at job start Tue Mar 31 2020 07:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31319 * 1 3 3 Si 1.86799 * 120.00547 * 2 1 4 4 H 1.48503 * 109.46550 * 89.99949 * 3 2 1 5 5 H 1.48492 * 109.47234 * 209.99824 * 3 2 1 6 6 H 1.48502 * 109.46745 * 330.00405 * 3 2 1 7 7 C 1.39128 * 119.99514 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00036 * 185.41721 * 7 2 1 9 9 N 1.36720 * 120.00089 * 5.41786 * 7 2 1 10 10 C 1.34774 * 119.99637 * 200.82238 * 9 7 2 11 11 O 1.21758 * 120.00615 * 3.45792 * 10 9 7 12 12 C 1.46235 * 119.99740 * 183.45325 * 10 9 7 13 13 C 1.34976 * 119.99831 * 173.34920 * 12 10 9 14 14 C 1.47148 * 120.00088 * 348.91154 * 13 12 10 15 15 C 1.39897 * 120.16339 * 133.42457 * 14 13 12 16 16 C 1.37869 * 119.84828 * 180.02562 * 15 14 13 17 17 C 1.38413 * 120.18694 * 359.97438 * 16 15 14 18 18 C 1.38501 * 120.33998 * 0.02562 * 17 16 15 19 19 Cl 1.73602 * 119.92632 * 180.02562 * 18 17 16 20 20 C 1.38026 * 120.14875 * 359.72185 * 18 17 16 21 21 C 1.46493 * 120.00115 * 20.82464 * 9 7 2 22 22 C 1.52997 * 117.49956 * 128.39239 * 21 9 7 23 23 C 1.53001 * 60.00391 * 252.51209 * 22 21 9 24 24 H 0.97006 * 119.99742 * 359.97438 * 1 2 3 25 25 H 1.08002 * 119.99654 * 353.34994 * 12 10 9 26 26 H 1.08002 * 119.99595 * 168.92034 * 13 12 10 27 27 H 1.07994 * 120.07835 * 0.02735 * 15 14 13 28 28 H 1.07993 * 119.90494 * 179.97438 * 16 15 14 29 29 H 1.08002 * 119.82834 * 180.02562 * 17 16 15 30 30 H 1.08004 * 120.09631 * 180.27684 * 20 18 17 31 31 H 1.08999 * 115.55073 * 274.10490 * 21 9 7 32 32 H 1.08995 * 117.50214 * 0.02562 * 22 21 9 33 33 H 1.09010 * 117.49870 * 145.01872 * 22 21 9 34 34 H 1.08997 * 117.49876 * 252.51100 * 23 22 21 35 35 H 1.09000 * 117.51784 * 107.47903 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2473 1.6176 0.0000 4 1 2.4948 2.0462 1.4002 5 1 3.5448 1.4400 -0.7000 6 1 1.4448 2.6526 -0.7000 7 6 2.0087 -1.2049 -0.0005 8 1 3.0851 -1.2072 0.0878 9 7 1.3296 -2.3862 -0.1129 10 6 1.9037 -3.5350 0.2961 11 8 3.0011 -3.5133 0.8232 12 6 1.2085 -4.8075 0.1069 13 6 1.8359 -5.9681 0.3918 14 6 3.2834 -5.9764 0.6562 15 6 3.7934 -6.6773 1.7543 16 6 5.1507 -6.6802 1.9963 17 6 6.0089 -5.9925 1.1558 18 6 5.5124 -5.2961 0.0665 19 17 6.5987 -4.4378 -0.9810 20 6 4.1566 -5.2881 -0.1918 21 6 -0.0219 -2.4033 -0.6777 22 6 -0.3001 -3.3889 -1.8144 23 6 -0.1959 -1.8912 -2.1090 24 1 -0.4850 0.8401 0.0004 25 1 0.1931 -4.8186 -0.2609 26 1 1.2754 -6.8907 0.4256 27 1 3.1255 -7.2148 2.4110 28 1 5.5453 -7.2206 2.8439 29 1 7.0712 -5.9991 1.3506 30 1 3.7708 -4.7484 -1.0441 31 1 -0.8290 -2.2080 0.0283 32 1 0.5223 -4.0249 -2.1417 33 1 -1.2905 -3.8425 -1.8563 34 1 -1.1176 -1.3593 -2.3447 35 1 0.6952 -1.5412 -2.6301 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491224708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:40 Heat of formation + Delta-G solvation = 50.434831 kcal Electronic energy + Delta-G solvation = -20816.845879 eV Core-core repulsion = 17614.919913 eV Total energy + Delta-G solvation = -3201.925967 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 291.077 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.35180 -38.35921 -36.24313 -35.86806 -33.62329 -32.66519 -31.18059 -30.25082 -29.19435 -25.53912 -23.38806 -22.13925 -21.68438 -21.48212 -20.55356 -18.14912 -17.07256 -16.74322 -15.79067 -15.18105 -14.96048 -14.90010 -14.25263 -14.01340 -13.64911 -13.41967 -13.00285 -12.83637 -12.54061 -12.45554 -11.82443 -11.29740 -11.23471 -11.16339 -11.00183 -10.96307 -10.79912 -10.50480 -10.39950 -10.39225 -9.86037 -9.49680 -9.27737 -8.91705 -8.53106 -8.20711 -7.79125 -7.48951 -6.38830 -3.89316 1.27153 1.76032 2.33899 2.62967 3.15544 3.21133 3.26288 4.05262 4.17391 4.36612 4.65624 4.77927 5.13057 5.17041 5.21574 5.43050 5.50595 5.62372 5.75852 5.85100 5.95258 5.97921 6.09208 6.20075 6.23871 6.35255 6.59778 6.69073 6.70195 6.73290 6.88499 6.89513 7.05692 7.19730 7.29157 7.46619 8.05196 8.43861 9.13912 9.34759 9.97549 10.61942 Molecular weight = 291.08amu Principal moments of inertia in cm(-1) A = 0.015981 B = 0.005820 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.708969 B = 4809.749509 C = 5737.211160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.036 3.964 3 Si 0.925 3.075 4 H -0.276 1.276 5 H -0.269 1.269 6 H -0.282 1.282 7 C -0.296 4.296 8 H 0.103 0.897 9 N -0.403 5.403 10 C 0.454 3.546 11 O -0.576 6.576 12 C -0.156 4.156 13 C -0.103 4.103 14 C -0.020 4.020 15 C -0.111 4.111 16 C -0.124 4.124 17 C -0.118 4.118 18 C -0.040 4.040 19 Cl -0.087 7.087 20 C -0.025 4.025 21 C 0.135 3.865 22 C -0.228 4.228 23 C -0.145 4.145 24 H 0.269 0.731 25 H 0.130 0.870 26 H 0.125 0.875 27 H 0.120 0.880 28 H 0.122 0.878 29 H 0.121 0.879 30 H 0.122 0.878 31 H 0.115 0.885 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.989 -10.418 -1.549 10.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.169 4.169 3 Si 0.752 3.248 4 H -0.202 1.202 5 H -0.193 1.193 6 H -0.208 1.208 7 C -0.425 4.425 8 H 0.120 0.880 9 N -0.119 5.119 10 C 0.246 3.754 11 O -0.463 6.463 12 C -0.177 4.177 13 C -0.124 4.124 14 C -0.020 4.020 15 C -0.129 4.129 16 C -0.142 4.142 17 C -0.137 4.137 18 C -0.066 4.066 19 Cl -0.059 7.059 20 C -0.044 4.044 21 C 0.030 3.970 22 C -0.266 4.266 23 C -0.183 4.183 24 H 0.080 0.920 25 H 0.148 0.852 26 H 0.143 0.857 27 H 0.138 0.862 28 H 0.140 0.860 29 H 0.139 0.861 30 H 0.140 0.860 31 H 0.132 0.868 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.441 -10.081 -1.403 10.467 hybrid contribution 0.142 1.240 -0.087 1.251 sum 2.583 -8.841 -1.490 9.331 Atomic orbital electron populations 1.69857 1.05923 1.27559 1.46934 1.25358 0.95547 0.99716 0.96300 0.85931 0.79441 0.80823 0.78639 1.20216 1.19333 1.20760 1.19712 0.92892 0.81994 1.47853 0.87969 1.43200 1.12607 1.06383 1.49707 1.17971 0.87979 0.84048 0.85378 1.90728 1.21339 1.86160 1.48034 1.23615 1.01127 0.93486 0.99507 1.21971 0.92294 0.97410 1.00754 1.18710 0.92877 0.95913 0.94536 1.21190 0.95114 0.99668 0.96947 1.20758 0.93280 1.00788 0.99422 1.20886 0.99858 0.98537 0.94389 1.20625 0.90880 0.99981 0.95116 1.98329 1.64395 1.76738 1.66419 1.20952 0.90269 0.94001 0.99170 1.21227 0.86949 0.99231 0.89587 1.23665 1.01798 0.94111 1.07028 1.22739 1.02102 0.93273 1.00174 0.92044 0.85248 0.85690 0.86185 0.86027 0.86056 0.85986 0.86778 0.89443 0.89232 0.89601 0.89623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.80 10.06 55.51 0.56 -21.24 16 2 C 0.04 0.92 5.15 -17.44 -0.09 0.83 16 3 Si 0.93 20.48 29.56 -169.99 -5.02 15.45 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 5 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.30 -8.00 9.17 -15.04 -0.14 -8.14 16 8 H 0.10 2.93 7.38 -52.49 -0.39 2.54 16 9 N -0.40 -9.96 2.93 -109.36 -0.32 -10.28 16 10 C 0.45 10.76 6.64 -13.05 -0.09 10.67 16 11 O -0.58 -15.15 12.06 5.14 0.06 -15.09 16 12 C -0.16 -2.91 8.04 -37.53 -0.30 -3.21 16 13 C -0.10 -1.69 9.79 -37.13 -0.36 -2.06 16 14 C -0.02 -0.35 4.40 -105.06 -0.46 -0.82 16 15 C -0.11 -1.73 9.80 -39.10 -0.38 -2.11 16 16 C -0.12 -1.81 10.03 -39.65 -0.40 -2.21 16 17 C -0.12 -1.86 9.82 -39.42 -0.39 -2.25 16 18 C -0.04 -0.71 6.31 -39.56 -0.25 -0.96 16 19 Cl -0.09 -1.49 28.95 -51.86 -1.50 -2.99 16 20 C -0.02 -0.48 6.50 -39.06 -0.25 -0.73 16 21 C 0.14 2.91 3.55 -67.93 -0.24 2.67 16 22 C -0.23 -3.92 7.83 -26.73 -0.21 -4.13 16 23 C -0.15 -2.86 9.05 -26.73 -0.24 -3.10 16 24 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 25 H 0.13 2.12 5.39 -52.49 -0.28 1.84 16 26 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 27 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 28 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 29 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 30 H 0.12 2.51 7.33 -52.48 -0.38 2.13 16 31 H 0.11 2.58 7.64 -51.93 -0.40 2.19 16 32 H 0.09 1.50 7.14 -51.93 -0.37 1.13 16 33 H 0.09 1.29 8.14 -51.92 -0.42 0.87 16 34 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 35 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 LS Contribution 310.80 15.07 4.68 4.68 Total: -1.00 -28.94 310.80 -9.26 -38.20 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -3.92 Total: 6.81 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -3.81 Total: -15.55 kcal Atomic # 7 Polarization: -31.76 SS G_CDS: 0.24 Total: -31.52 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: 0.06 Total: -15.09 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -1.50 Total: -2.99 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.94 -9.26 -38.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491224708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.637 kcal (2) G-P(sol) polarization free energy of solvation -28.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds