Wall clock time and date at job start Tue Mar 31 2020 06:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86802 * 119.99576 * 2 1 4 4 H 1.48493 * 109.47089 * 270.00112 * 3 2 1 5 5 H 1.48498 * 109.47288 * 30.00371 * 3 2 1 6 6 H 1.48503 * 109.46557 * 150.00164 * 3 2 1 7 7 C 1.39935 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99539 * 175.60164 * 7 2 1 9 9 C 1.41435 * 120.00253 * 355.61352 * 7 2 1 10 10 C 1.40787 * 120.17680 * 214.71813 * 9 7 2 11 11 C 1.37713 * 120.04096 * 179.97438 * 10 9 7 12 12 C 1.38373 * 120.40821 * 359.77747 * 11 10 9 13 13 C 1.39880 * 120.36098 * 0.47773 * 12 11 10 14 14 C 1.47887 * 120.02575 * 179.78187 * 13 12 11 15 15 O 1.21546 * 119.99982 * 187.96501 * 14 13 12 16 16 N 1.34772 * 119.99787 * 7.97050 * 14 13 12 17 17 C 1.47581 * 134.49381 * 177.09292 * 16 14 13 18 18 C 1.53941 * 86.12212 * 204.65810 * 17 16 14 19 19 O 1.42894 * 113.74147 * 90.73620 * 18 17 16 20 20 C 1.50696 * 113.74316 * 221.94123 * 18 17 16 21 21 O 1.20829 * 119.99910 * 23.07665 * 20 18 17 22 22 O 1.34228 * 120.00058 * 203.07110 * 20 18 17 23 23 C 1.47928 * 134.50488 * 357.12405 * 16 14 13 24 24 C 1.39037 * 119.94768 * 359.50709 * 13 12 11 25 25 H 0.96998 * 120.00250 * 359.97438 * 1 2 3 26 26 H 1.08005 * 119.97990 * 0.02562 * 10 9 7 27 27 H 1.08001 * 119.79354 * 180.02562 * 11 10 9 28 28 H 1.08000 * 119.81505 * 180.23553 * 12 11 10 29 29 H 1.09004 * 113.77117 * 90.35384 * 17 16 14 30 30 H 1.09000 * 113.87153 * 318.98035 * 17 16 14 31 31 H 0.96699 * 114.00124 * 181.92447 * 19 18 17 32 32 H 0.96701 * 117.00052 * 179.97438 * 22 20 18 33 33 H 1.09004 * 113.87050 * 41.07531 * 23 16 14 34 34 H 1.09008 * 113.76579 * 269.58440 * 23 16 14 35 35 H 1.07993 * 120.19658 * 180.28037 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4896 2.0465 -1.4000 5 1 1.4396 2.6527 0.7001 6 1 3.5398 1.4402 0.7000 7 6 2.0080 -1.2119 -0.0005 8 1 3.0856 -1.2131 -0.0723 9 6 1.3039 -2.4350 0.0926 10 6 1.8627 -3.5217 0.7919 11 6 1.1746 -4.7112 0.8812 12 6 -0.0695 -4.8467 0.2907 13 6 -0.6382 -3.7798 -0.4127 14 6 -1.9661 -3.9343 -1.0451 15 8 -2.3966 -3.0633 -1.7753 16 7 -2.6989 -5.0411 -0.8116 17 6 -4.0441 -5.4949 -1.2147 18 6 -4.0126 -6.3727 0.0495 19 8 -4.5514 -5.7327 1.2079 20 6 -4.5588 -7.7612 -0.1621 21 8 -4.5778 -8.2404 -1.2711 22 8 -5.0240 -8.4657 0.8815 23 6 -2.4785 -6.2886 -0.0479 24 6 0.0433 -2.5720 -0.5120 25 1 -0.4850 0.8400 0.0004 26 1 2.8313 -3.4221 1.2592 27 1 1.6068 -5.5421 1.4190 28 1 -0.6024 -5.7827 0.3700 29 1 -4.0556 -6.0638 -2.1444 30 1 -4.8009 -4.7110 -1.1866 31 1 -4.5066 -6.2698 2.0108 32 1 -5.3647 -9.3515 0.6963 33 1 -1.9849 -6.1368 0.9121 34 1 -2.0310 -7.0902 -0.6356 35 1 -0.3940 -1.7442 -1.0502 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608189607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:40 Heat of formation + Delta-G solvation = -98.843366 kcal Electronic energy + Delta-G solvation = -22722.697666 eV Core-core repulsion = 19073.589347 eV Total energy + Delta-G solvation = -3649.108320 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.098 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.39389 -39.63265 -38.01430 -36.85660 -36.64931 -35.25221 -33.66359 -30.67471 -29.49404 -28.94006 -26.78048 -25.21109 -25.00000 -22.11328 -20.97246 -20.51594 -19.33542 -18.70224 -18.10074 -17.60292 -16.64932 -15.95869 -15.59217 -15.51217 -14.97246 -14.78476 -14.68184 -13.94797 -13.77291 -13.45141 -13.13272 -12.95278 -12.65359 -12.56763 -12.49537 -11.99455 -11.84939 -11.68390 -11.18394 -11.12653 -10.96462 -10.73343 -10.51879 -10.28337 -10.01788 -9.69280 -9.30296 -9.02988 -8.55653 -7.67390 -7.42338 -6.64990 -4.46552 1.64045 2.12103 2.40381 2.80853 2.98891 3.09468 3.10821 3.15775 3.55195 3.78834 3.87294 3.96244 4.50452 4.66076 4.86914 5.07627 5.23650 5.29031 5.51032 5.55645 5.63378 5.93018 6.03148 6.16045 6.21592 6.67340 6.96585 6.99499 7.11948 7.24889 7.35969 7.45652 7.62694 7.75699 7.87440 8.02712 8.18253 8.50864 8.77694 8.83240 8.86276 10.25953 Molecular weight = 291.10amu Principal moments of inertia in cm(-1) A = 0.030421 B = 0.003794 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.191778 B = 7378.244904 C = 7810.267366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.069 3.931 3 Si 0.918 3.082 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.465 4.465 8 H 0.079 0.921 9 C 0.094 3.906 10 C -0.196 4.196 11 C -0.108 4.108 12 C -0.218 4.218 13 C -0.129 4.129 14 C 0.595 3.405 15 O -0.534 6.534 16 N -0.637 5.637 17 C 0.136 3.864 18 C 0.099 3.901 19 O -0.511 6.511 20 C 0.470 3.530 21 O -0.500 6.500 22 O -0.513 6.513 23 C 0.094 3.906 24 C -0.080 4.080 25 H 0.282 0.718 26 H 0.098 0.902 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.110 0.890 30 H 0.099 0.901 31 H 0.392 0.608 32 H 0.413 0.587 33 H 0.115 0.885 34 H 0.099 0.901 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.459 -13.874 3.446 16.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.148 4.148 3 Si 0.742 3.258 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.495 4.495 8 H 0.097 0.903 9 C 0.092 3.908 10 C -0.216 4.216 11 C -0.126 4.126 12 C -0.238 4.238 13 C -0.132 4.132 14 C 0.390 3.610 15 O -0.411 6.411 16 N -0.375 5.375 17 C 0.013 3.987 18 C 0.055 3.945 19 O -0.317 6.317 20 C 0.310 3.690 21 O -0.387 6.387 22 O -0.326 6.326 23 C -0.030 4.030 24 C -0.100 4.100 25 H 0.093 0.907 26 H 0.116 0.884 27 H 0.112 0.888 28 H 0.121 0.879 29 H 0.128 0.872 30 H 0.117 0.883 31 H 0.242 0.758 32 H 0.273 0.727 33 H 0.133 0.867 34 H 0.117 0.883 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.723 -12.255 2.355 14.676 hybrid contribution 0.158 -0.480 0.444 0.673 sum -7.565 -12.736 2.799 15.075 Atomic orbital electron populations 1.69719 1.07278 1.29269 1.36696 1.25927 0.94961 1.01370 0.92511 0.86155 0.80083 0.80340 0.79177 1.19409 1.20204 1.18700 1.19523 0.94782 0.89907 1.45273 0.90288 1.17645 0.91857 0.92377 0.88952 1.21285 1.01042 0.94975 1.04297 1.20478 0.95016 0.96815 1.00335 1.20966 0.97935 0.97972 1.06890 1.19433 0.93075 0.96966 1.03735 1.18552 0.84401 0.78609 0.79464 1.90729 1.71991 1.40423 1.37961 1.49560 1.17294 1.17136 1.53519 1.23111 0.86713 0.95500 0.93359 1.22931 0.94967 0.85316 0.91288 1.86643 1.82689 1.44404 1.18012 1.24053 0.74239 0.88258 0.82413 1.90760 1.51845 1.70487 1.25558 1.84494 1.73826 1.33752 1.40522 1.24035 0.92026 0.87643 0.99273 1.21952 0.95507 0.94737 0.97851 0.90694 0.88428 0.88770 0.87864 0.87202 0.88264 0.75838 0.72680 0.86735 0.88315 0.83796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.58 10.60 55.55 0.59 -21.00 16 2 C 0.07 1.75 5.42 -17.34 -0.09 1.66 16 3 Si 0.92 19.08 29.56 -169.99 -5.03 14.05 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.46 -12.25 9.04 -37.73 -0.34 -12.59 16 8 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 9 C 0.09 2.48 5.55 -106.87 -0.59 1.89 16 10 C -0.20 -4.58 9.78 -38.81 -0.38 -4.96 16 11 C -0.11 -2.24 10.01 -39.72 -0.40 -2.64 16 12 C -0.22 -4.49 9.13 -38.92 -0.36 -4.84 16 13 C -0.13 -3.07 5.87 -105.04 -0.62 -3.69 16 14 C 0.60 13.52 7.98 -12.31 -0.10 13.42 16 15 O -0.53 -13.90 17.09 5.33 0.09 -13.81 16 16 N -0.64 -11.09 3.61 -179.09 -0.65 -11.74 16 17 C 0.14 1.92 8.13 -2.97 -0.02 1.89 16 18 C 0.10 1.14 1.86 -90.85 -0.17 0.97 16 19 O -0.51 -5.82 13.44 -47.35 -0.64 -6.46 16 20 C 0.47 4.60 7.65 36.00 0.28 4.88 16 21 O -0.50 -6.16 16.80 -18.75 -0.31 -6.48 16 22 O -0.51 -3.30 12.81 -44.01 -0.56 -3.86 16 23 C 0.09 1.19 5.94 -2.77 -0.02 1.17 16 24 C -0.08 -2.15 8.21 -38.44 -0.32 -2.47 16 25 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 26 H 0.10 2.11 8.06 -52.48 -0.42 1.68 16 27 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 28 H 0.10 1.72 3.76 -52.49 -0.20 1.52 16 29 H 0.11 1.42 7.37 -51.93 -0.38 1.04 16 30 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.39 2.75 8.59 45.56 0.39 3.14 16 32 H 0.41 0.94 9.10 45.56 0.41 1.35 16 33 H 0.11 1.39 6.27 -51.93 -0.33 1.06 16 34 H 0.10 1.08 8.09 -51.92 -0.42 0.66 16 35 H 0.14 4.23 5.74 -52.49 -0.30 3.93 16 LS Contribution 309.14 15.07 4.66 4.66 Total: -1.00 -33.85 309.14 -6.61 -40.46 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -1.64 Total: 9.49 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -3.12 Total: -5.32 kcal Atomic # 7 Polarization: -32.68 SS G_CDS: -0.06 Total: -32.74 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -1.42 Total: -30.61 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.85 -6.61 -40.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608189607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.380 kcal (2) G-P(sol) polarization free energy of solvation -33.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds