Wall clock time and date at job start Tue Mar 31 2020 07:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46498 * 109.47104 * 2 1 4 4 C 1.46499 * 119.99693 * 265.13057 * 3 2 1 5 5 C 1.50700 * 109.47152 * 263.18902 * 4 3 2 6 6 H 1.08003 * 119.99990 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00116 * 179.97438 * 5 4 3 8 8 N 1.31508 * 120.00114 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99808 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47322 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46907 * 120.00317 * 9 7 5 12 12 H 1.48502 * 109.47100 * 239.99993 * 9 7 5 13 13 C 1.34773 * 120.00011 * 85.12798 * 3 2 1 14 14 O 1.21706 * 120.00300 * 3.85755 * 13 3 2 15 15 C 1.46551 * 119.99865 * 183.85114 * 13 3 2 16 16 C 1.37739 * 125.96144 * 173.42996 * 15 13 3 17 17 C 1.39907 * 106.76200 * 179.78574 * 16 15 13 18 18 C 1.36452 * 107.09449 * 0.37685 * 17 16 15 19 19 C 1.47821 * 125.65433 * 179.88451 * 18 17 16 20 20 N 1.34236 * 126.70360 * 359.73427 * 19 18 17 21 21 N 1.28984 * 107.24469 * 180.02562 * 20 19 18 22 22 N 1.28710 * 109.00784 * 359.97438 * 21 20 19 23 23 H 0.96996 * 125.31580 * 179.97438 * 22 21 20 24 24 N 1.28874 * 109.37232 * 0.02562 * 22 21 20 25 25 O 1.34339 * 108.69676 * 359.61657 * 18 17 16 26 26 H 1.09001 * 109.47230 * 60.00744 * 1 2 3 27 27 H 1.09007 * 109.46826 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47298 * 299.99955 * 1 2 3 29 29 H 1.09000 * 109.47689 * 239.99438 * 2 1 3 30 30 H 1.09006 * 109.47079 * 119.99704 * 2 1 3 31 31 H 1.08995 * 109.47482 * 23.19404 * 4 3 2 32 32 H 1.09000 * 109.46910 * 143.19430 * 4 3 2 33 33 H 0.97005 * 120.00080 * 179.97438 * 8 7 5 34 34 H 1.07998 * 126.61793 * 0.02562 * 16 15 13 35 35 H 1.08000 * 126.44702 * 180.22996 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3639 2.0358 -1.2642 5 6 3.8497 1.9317 -1.4940 6 1 4.4740 1.4279 -0.7709 7 6 4.4119 2.4787 -2.6279 8 7 3.6518 3.0918 -3.5086 9 14 6.2535 2.3490 -2.9130 10 1 6.8790 1.6166 -1.7828 11 1 6.5079 1.6155 -4.1789 12 1 6.8375 3.7113 -3.0044 13 6 2.1494 2.0496 1.1630 14 8 1.9296 1.4841 2.2180 15 6 2.5569 3.4573 1.1571 16 6 2.6061 4.2897 2.2534 17 6 3.0507 5.5346 1.7952 18 6 3.2463 5.4202 0.4496 19 6 3.7139 6.4978 -0.4478 20 7 4.0174 7.7578 -0.0982 21 7 4.3817 8.3749 -1.1706 22 7 4.3193 7.5601 -2.1649 23 1 4.5414 7.7783 -3.0835 24 7 3.9145 6.4092 -1.7497 25 8 2.9490 4.1644 0.0764 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.8346 1.5480 -2.0826 32 1 2.0759 3.0862 -1.2200 33 1 4.0474 3.4770 -4.3062 34 1 2.3542 4.0302 3.2710 35 1 3.2072 6.4200 2.3935 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590690708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:07 Heat of formation + Delta-G solvation = 115.799932 kcal Electronic energy + Delta-G solvation = -23525.339778 eV Core-core repulsion = 19950.124593 eV Total energy + Delta-G solvation = -3575.215186 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.112 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.26181 -42.13995 -38.91975 -35.40696 -34.29633 -33.25462 -32.74974 -32.53368 -30.84633 -29.08220 -27.02674 -24.97582 -24.33388 -23.04507 -22.93582 -21.20867 -20.92368 -19.17011 -18.88887 -17.13801 -17.01897 -16.51959 -16.23953 -15.59781 -15.55573 -14.51208 -14.19191 -13.84621 -13.70519 -12.93656 -12.84631 -12.75826 -12.56675 -12.40354 -12.22613 -12.01717 -11.66672 -11.26428 -11.24356 -10.96573 -10.89322 -10.85829 -10.75212 -10.50348 -10.12351 -9.77609 -9.59027 -9.52535 -8.48985 -8.13693 -7.75134 -6.11577 -4.15505 1.00466 1.36067 2.16249 2.33253 2.84980 3.09219 3.20443 3.28323 3.34561 3.72872 3.78138 4.11173 4.36767 4.63382 5.16076 5.23260 5.24311 5.39645 5.56674 5.61918 5.73046 5.81984 5.98303 6.07099 6.12600 6.18858 6.35027 6.53098 6.57245 6.65372 6.69142 7.20736 7.34312 7.50811 7.80657 8.09312 8.14731 8.30556 8.70500 8.89356 9.49381 10.95660 Molecular weight = 291.11amu Principal moments of inertia in cm(-1) A = 0.012741 B = 0.007613 C = 0.005375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.168449 B = 3677.139192 C = 5208.228379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.582 5.582 4 C 0.232 3.768 5 C -0.533 4.533 6 H 0.057 0.943 7 C 0.078 3.922 8 N -0.876 5.876 9 Si 0.886 3.114 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.286 1.286 13 C 0.595 3.405 14 O -0.552 6.552 15 C -0.023 4.023 16 C -0.151 4.151 17 C -0.160 4.160 18 C 0.063 3.937 19 C 0.245 3.755 20 N -0.257 5.257 21 N -0.059 5.059 22 N -0.227 5.227 23 H 0.476 0.524 24 N -0.238 5.238 25 O -0.084 6.084 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.040 0.960 32 H 0.052 0.948 33 H 0.261 0.739 34 H 0.162 0.838 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.222 5.298 2.875 6.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.008 4.008 3 N -0.311 5.311 4 C 0.113 3.887 5 C -0.571 4.571 6 H 0.075 0.925 7 C -0.126 4.126 8 N -0.514 5.514 9 Si 0.714 3.286 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.212 1.212 13 C 0.382 3.618 14 O -0.434 6.434 15 C -0.079 4.079 16 C -0.171 4.171 17 C -0.182 4.182 18 C 0.006 3.994 19 C -0.034 4.034 20 N -0.133 5.133 21 N -0.054 5.054 22 N -0.074 5.074 23 H 0.330 0.670 24 N -0.090 5.090 25 O 0.026 5.974 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.180 0.820 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.125 5.527 2.708 6.511 hybrid contribution 1.224 -0.176 -0.888 1.523 sum -0.901 5.351 1.819 5.724 Atomic orbital electron populations 1.22129 0.96497 1.01532 1.02161 1.21338 0.93600 0.82909 1.02931 1.48294 1.61006 1.13440 1.08322 1.19730 0.96470 0.93611 0.78843 1.21338 0.92110 1.37292 1.06377 0.92458 1.24741 0.97475 0.94695 0.95721 1.69914 1.34820 1.36098 1.10582 0.86632 0.86124 0.77666 0.78165 1.19784 1.20952 1.21236 1.16588 0.77958 0.82880 0.84328 1.90779 1.54223 1.67193 1.31200 1.22656 1.06142 0.93821 0.85283 1.21968 1.03778 0.91866 0.99522 1.21588 1.04675 0.99600 0.92328 1.18311 1.06857 0.83589 0.90628 1.21994 1.02607 0.91415 0.87418 1.76069 1.15528 1.03290 1.18373 1.78827 1.16166 1.19724 0.90695 1.47816 1.41803 1.04515 1.13240 0.66976 1.75660 1.15544 1.05194 1.12618 1.84878 1.61609 1.17831 1.33092 0.92496 0.92102 0.92583 0.89953 0.90839 0.94214 0.93069 0.92955 0.82018 0.82134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 10.20 37.15 0.38 -2.11 16 2 C 0.12 2.05 6.08 -4.05 -0.02 2.02 16 3 N -0.58 -12.35 2.49 -176.66 -0.44 -12.79 16 4 C 0.23 5.54 4.75 -5.19 -0.02 5.51 16 5 C -0.53 -13.88 8.39 -34.44 -0.29 -14.17 16 6 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 7 C 0.08 2.03 5.46 -17.82 -0.10 1.93 16 8 N -0.88 -23.33 13.29 55.43 0.74 -22.60 16 9 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.59 12.81 7.54 -12.91 -0.10 12.71 16 14 O -0.55 -12.24 16.51 5.18 0.09 -12.15 16 15 C -0.02 -0.47 6.77 -36.41 -0.25 -0.72 16 16 C -0.15 -2.58 10.66 -39.14 -0.42 -3.00 16 17 C -0.16 -2.60 10.78 -39.60 -0.43 -3.02 16 18 C 0.06 1.20 7.24 -36.31 -0.26 0.94 16 19 C 0.24 4.55 8.20 -156.23 -1.28 3.27 16 20 N -0.26 -4.30 12.53 32.07 0.40 -3.90 16 21 N -0.06 -0.87 13.46 60.35 0.81 -0.06 16 22 N -0.23 -3.14 7.89 60.35 0.48 -2.66 16 23 H 0.48 4.28 8.96 -340.34 -3.05 1.22 16 24 N -0.24 -4.42 12.41 32.09 0.40 -4.02 16 25 O -0.08 -1.83 6.60 3.76 0.02 -1.81 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 1.41 8.03 -51.93 -0.42 1.00 16 30 H 0.07 1.29 7.52 -51.93 -0.39 0.90 16 31 H 0.04 0.98 8.02 -51.93 -0.42 0.56 16 32 H 0.05 1.31 5.42 -51.93 -0.28 1.02 16 33 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 34 H 0.16 2.38 8.06 -52.49 -0.42 1.96 16 35 H 0.16 2.12 8.06 -52.49 -0.42 1.69 16 LS Contribution 316.72 15.07 4.77 4.77 Total: -1.00 -30.82 316.72 -6.75 -37.57 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -6.22 Total: -1.55 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: -2.79 Total: 3.37 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: 2.39 Total: -46.02 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: 0.11 Total: -13.96 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.82 -6.75 -37.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590690708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.370 kcal (2) G-P(sol) polarization free energy of solvation -30.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds