Wall clock time and date at job start Tue Mar 31 2020 06:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.35843 * 126.45793 * 2 1 4 4 H 0.97000 * 124.91589 * 359.96823 * 3 2 1 5 5 N 1.28462 * 110.16951 * 179.97438 * 3 2 1 6 6 C 1.31944 * 110.20808 * 0.02562 * 5 3 2 7 7 C 1.47498 * 126.45834 * 179.97438 * 6 5 3 8 8 O 1.21612 * 119.99578 * 180.02562 * 7 6 5 9 9 N 1.34776 * 120.00269 * 0.02562 * 7 6 5 10 10 C 1.40101 * 120.00029 * 180.02562 * 9 7 6 11 11 C 1.40420 * 125.97178 * 359.97438 * 10 9 7 12 12 C 1.35236 * 107.86137 * 179.75488 * 11 10 9 13 13 N 1.34966 * 107.86688 * 0.37009 * 12 11 10 14 14 C 1.46500 * 125.97782 * 179.89366 * 13 12 11 15 15 C 1.50706 * 109.47299 * 124.71059 * 14 13 12 16 16 H 1.07998 * 119.99503 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00434 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99826 * 359.72891 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47364 * 179.72558 * 19 17 15 21 21 H 1.48508 * 109.46883 * 299.72681 * 19 17 15 22 22 H 1.48497 * 109.46870 * 59.72491 * 19 17 15 23 23 N 1.31228 * 125.97405 * 179.97438 * 10 9 7 24 24 C 1.35784 * 126.45835 * 180.26355 * 2 1 3 25 25 O 1.36076 * 127.27159 * 0.02562 * 24 2 1 26 26 H 1.08999 * 109.47397 * 90.02541 * 1 2 3 27 27 H 1.08999 * 109.46886 * 210.02229 * 1 2 3 28 28 H 1.08996 * 109.47030 * 330.02193 * 1 2 3 29 29 H 0.96997 * 119.99949 * 359.97438 * 9 7 6 30 30 H 1.07996 * 126.07098 * 359.97438 * 11 10 9 31 31 H 1.08007 * 126.06867 * 180.26687 * 12 11 10 32 32 H 1.09004 * 109.47078 * 4.71821 * 14 13 12 33 33 H 1.08993 * 109.47364 * 244.71592 * 14 13 12 34 34 H 0.97000 * 120.00236 * 0.27947 * 18 17 15 35 35 H 0.96703 * 114.00099 * 270.20587 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3142 1.0926 0.0000 4 1 2.0044 2.0118 -0.0004 5 7 3.5473 0.7323 0.0005 6 6 3.6375 -0.5841 0.0004 7 6 4.8809 -1.3774 0.0003 8 8 4.8270 -2.5923 -0.0003 9 7 6.0768 -0.7560 0.0010 10 6 7.2579 -1.5096 0.0004 11 6 7.3419 -2.9112 -0.0004 12 6 8.6516 -3.2483 -0.0063 13 7 9.3728 -2.1074 -0.0009 14 6 10.8348 -2.0134 -0.0022 15 6 11.2827 -1.1673 -1.1661 16 1 10.5515 -0.7418 -1.8374 17 6 12.6260 -0.9364 -1.3740 18 7 13.5162 -1.4502 -0.5534 19 14 13.1812 0.1129 -2.8162 20 1 14.6628 0.2131 -2.8141 21 1 12.7290 -0.5113 -4.0856 22 1 12.5931 1.4711 -2.6955 23 7 8.4790 -1.0289 0.0004 24 6 2.3139 -1.0921 -0.0050 25 8 1.9326 -2.3983 -0.0115 26 1 -0.3634 -0.0005 -1.0276 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3633 0.8901 0.5135 29 1 6.1198 0.2131 0.0011 30 1 6.5086 -3.5982 -0.0002 31 1 9.0499 -4.2522 -0.0124 32 1 11.2630 -3.0117 -0.0928 33 1 11.1704 -1.5573 0.9291 34 1 13.2279 -1.9949 0.1957 35 1 1.8191 -2.7793 0.8700 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001628447708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:42 Heat of formation + Delta-G solvation = 79.255485 kcal Electronic energy + Delta-G solvation = -21912.073774 eV Core-core repulsion = 18335.273903 eV Total energy + Delta-G solvation = -3576.799872 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.112 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.03520 -40.64994 -39.02090 -37.44089 -34.78540 -33.68781 -33.00038 -31.47185 -30.65496 -29.34732 -27.29370 -26.45016 -24.70289 -22.87758 -21.67610 -21.29590 -20.28089 -19.39771 -18.52597 -17.46569 -17.15990 -17.02507 -16.38515 -16.22544 -15.20937 -14.89463 -14.48176 -14.28389 -14.09335 -13.92079 -13.75360 -13.41439 -13.14887 -13.00545 -12.41020 -12.21641 -11.99884 -11.80805 -11.14055 -10.79154 -10.65311 -10.43130 -10.13811 -10.10077 -9.71596 -9.69964 -9.06934 -8.96901 -8.55594 -8.16690 -7.48859 -6.55624 -4.29391 1.19502 1.52594 2.32815 2.66327 2.74496 3.12467 3.40126 3.41995 3.60340 3.67448 3.78991 4.02226 4.24676 4.31351 4.43501 4.62976 5.00599 5.04734 5.18242 5.29595 5.36218 5.49126 5.74335 5.78449 6.21556 6.43151 6.47340 6.57581 6.63543 6.78022 7.31489 7.38953 7.42714 7.55750 7.75057 7.86464 8.23047 8.37434 8.57275 8.65104 9.38694 10.81991 Molecular weight = 291.11amu Principal moments of inertia in cm(-1) A = 0.030261 B = 0.003015 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.054337 B = 9285.229574 C = 9938.890789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.012 4.012 3 N -0.371 5.371 4 H 0.451 0.549 5 N -0.240 5.240 6 C -0.023 4.023 7 C 0.609 3.391 8 O -0.500 6.500 9 N -0.618 5.618 10 C 0.260 3.740 11 C -0.284 4.284 12 C 0.051 3.949 13 N -0.317 5.317 14 C 0.249 3.751 15 C -0.607 4.607 16 H 0.064 0.936 17 C 0.023 3.977 18 N -0.905 5.905 19 Si 1.077 2.923 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.285 1.285 23 N -0.299 5.299 24 C 0.051 3.949 25 O -0.450 6.450 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.417 0.583 30 H 0.162 0.838 31 H 0.169 0.831 32 H 0.047 0.953 33 H 0.035 0.965 34 H 0.267 0.733 35 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.435 3.107 3.536 26.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.138 4.138 3 N -0.089 5.089 4 H 0.297 0.703 5 N -0.078 5.078 6 C -0.185 4.185 7 C 0.392 3.608 8 O -0.370 6.370 9 N -0.265 5.265 10 C 0.006 3.994 11 C -0.315 4.315 12 C -0.099 4.099 13 N -0.099 5.099 14 C 0.131 3.869 15 C -0.646 4.646 16 H 0.082 0.918 17 C -0.182 4.182 18 N -0.541 5.541 19 Si 0.904 3.096 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.211 1.211 23 N -0.130 5.130 24 C -0.005 4.005 25 O -0.255 6.255 26 H 0.100 0.900 27 H 0.106 0.894 28 H 0.091 0.909 29 H 0.253 0.747 30 H 0.180 0.820 31 H 0.186 0.814 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -23.600 4.819 2.183 24.185 hybrid contribution -2.396 -1.062 1.250 2.903 sum -25.995 3.758 3.433 26.489 Atomic orbital electron populations 1.20293 0.85822 1.03910 1.03667 1.21577 0.95487 0.87320 1.09399 1.43062 1.02753 1.09376 1.53730 0.70343 1.73663 1.01803 1.14090 1.18227 1.22198 0.94986 0.89954 1.11332 1.16612 0.80748 0.86456 0.76984 1.90767 1.85888 1.12364 1.47994 1.42229 1.02254 1.10343 1.71706 1.19058 0.86061 0.90799 1.03439 1.21547 0.96692 0.93555 1.19715 1.22563 0.91762 0.93018 1.02526 1.48804 1.07438 1.01613 1.52053 1.19762 0.69004 0.98870 0.99255 1.22113 0.95181 1.34857 1.12418 0.91818 1.25921 0.92343 0.97790 1.02133 1.70851 1.36483 1.31687 1.15061 0.83421 0.76149 0.75730 0.74330 1.20541 1.21229 1.21134 1.77374 0.96379 1.11470 1.27782 1.17724 0.88711 0.85232 1.08817 1.84921 1.88650 1.18967 1.32993 0.90049 0.89441 0.90924 0.74722 0.82027 0.81407 0.93577 0.94745 0.92285 0.75742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.30 10.44 36.00 0.38 0.07 16 2 C -0.01 -0.09 7.27 -81.70 -0.59 -0.69 16 3 N -0.37 -2.77 6.87 33.71 0.23 -2.54 16 4 H 0.45 1.51 8.96 -190.44 -1.71 -0.20 16 5 N -0.24 -2.73 11.91 33.45 0.40 -2.33 16 6 C -0.02 -0.31 7.13 -82.69 -0.59 -0.90 16 7 C 0.61 10.16 7.79 -12.49 -0.10 10.06 16 8 O -0.50 -9.36 13.65 3.07 0.04 -9.32 16 9 N -0.62 -10.86 5.44 -12.08 -0.07 -10.93 16 10 C 0.26 5.53 8.11 -154.43 -1.25 4.28 16 11 C -0.28 -5.84 9.60 -39.83 -0.38 -6.22 16 12 C 0.05 1.05 11.43 -17.24 -0.20 0.85 16 13 N -0.32 -7.63 3.67 -62.56 -0.23 -7.85 16 14 C 0.25 6.43 5.57 -5.19 -0.03 6.40 16 15 C -0.61 -17.40 9.24 -34.44 -0.32 -17.72 16 16 H 0.06 1.91 7.81 -52.49 -0.41 1.50 16 17 C 0.02 0.64 5.46 -17.82 -0.10 0.55 16 18 N -0.91 -26.65 13.65 55.43 0.76 -25.90 16 19 Si 1.08 25.31 29.90 -169.99 -5.08 20.23 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 23 N -0.30 -7.21 12.42 31.43 0.39 -6.82 16 24 C 0.05 0.58 7.28 -39.11 -0.28 0.29 16 25 O -0.45 -4.91 13.19 -22.18 -0.29 -5.20 16 26 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 29 H 0.42 6.53 8.54 -40.82 -0.35 6.18 16 30 H 0.16 3.19 5.91 -52.49 -0.31 2.88 16 31 H 0.17 2.79 8.06 -52.48 -0.42 2.37 16 32 H 0.05 1.14 7.94 -51.93 -0.41 0.73 16 33 H 0.03 0.92 8.00 -51.93 -0.42 0.51 16 34 H 0.27 7.68 7.22 -40.82 -0.29 7.38 16 35 H 0.39 2.54 9.07 45.56 0.41 2.95 16 LS Contribution 317.29 15.07 4.78 4.78 Total: -1.00 -36.93 317.29 -6.51 -43.44 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -3.97 Total: 5.47 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -3.47 Total: -3.02 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: 1.48 Total: -56.38 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.25 Total: -14.52 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -5.08 Total: 20.23 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -36.93 -6.51 -43.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001628447708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.692 kcal (2) G-P(sol) polarization free energy of solvation -36.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds