Wall clock time and date at job start Tue Mar 31 2020 07:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38375 * 119.84451 * 2 1 4 4 C 1.37944 * 120.14896 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.07854 * 180.02562 * 4 3 2 6 6 C 1.39635 * 119.84590 * 0.02582 * 4 3 2 7 7 C 1.47725 * 120.14653 * 180.02562 * 6 4 3 8 8 O 1.21473 * 120.00289 * 90.00123 * 7 6 4 9 9 O 1.34710 * 119.99570 * 269.72073 * 7 6 4 10 10 C 1.45202 * 116.99623 * 180.27322 * 9 7 6 11 11 C 1.50709 * 109.47095 * 180.02562 * 10 9 7 12 12 O 1.21296 * 119.99445 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00197 * 180.02562 * 11 10 9 14 14 C 1.37096 * 120.00308 * 179.97438 * 13 11 10 15 15 H 1.08005 * 119.99819 * 0.02562 * 14 13 11 16 16 C 1.38946 * 120.00438 * 179.97438 * 14 13 11 17 17 N 1.31421 * 119.99646 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00363 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46868 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47025 * 120.00429 * 18 16 14 21 21 H 1.48499 * 109.47252 * 240.00734 * 18 16 14 22 22 C 1.39624 * 119.69978 * 0.27163 * 6 4 3 23 23 C 1.50706 * 120.07176 * 179.70168 * 22 6 4 24 24 C 1.37948 * 119.84930 * 359.43169 * 22 6 4 25 25 H 1.09004 * 109.47101 * 89.99859 * 1 2 3 26 26 H 1.09006 * 109.46935 * 209.99191 * 1 2 3 27 27 H 1.09000 * 109.47117 * 329.99442 * 1 2 3 28 28 H 1.07997 * 119.92524 * 359.97438 * 3 2 1 29 29 H 1.09000 * 109.46597 * 269.98238 * 5 4 3 30 30 H 1.09002 * 109.47000 * 29.97556 * 5 4 3 31 31 H 1.09000 * 109.47337 * 149.97637 * 5 4 3 32 32 H 1.08998 * 109.47630 * 300.00514 * 10 9 7 33 33 H 1.09004 * 109.46770 * 60.00918 * 10 9 7 34 34 H 0.96999 * 119.99848 * 0.02562 * 13 11 10 35 35 H 0.97004 * 119.99672 * 179.97438 * 17 16 14 36 36 H 1.08998 * 109.46816 * 90.00879 * 23 22 6 37 37 H 1.09007 * 109.46974 * 210.00202 * 23 22 6 38 38 H 1.08991 * 109.47371 * 330.00277 * 23 22 6 39 39 H 1.08003 * 119.92256 * 180.29534 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2002 0.0000 4 6 3.5751 1.2076 0.0005 5 6 4.3234 2.5156 0.0011 6 6 4.2764 0.0001 0.0005 7 6 5.7537 0.0002 0.0017 8 8 6.3603 -0.0002 1.0541 9 8 6.4280 -0.0049 -1.1645 10 6 7.8780 -0.0106 -1.0874 11 6 8.4551 -0.0152 -2.4796 12 8 7.7168 -0.0132 -3.4420 13 7 9.7913 -0.0214 -2.6552 14 6 10.3163 -0.0260 -3.9216 15 1 9.6590 -0.0243 -4.7786 16 6 11.6939 -0.0319 -4.1027 17 7 12.4936 -0.0335 -3.0598 18 14 12.4092 -0.0375 -5.8283 19 1 11.3054 -0.0340 -6.8216 20 1 13.2504 1.1713 -6.0193 21 1 13.2403 -1.2537 -6.0156 22 6 3.5751 -1.2072 -0.0058 23 6 4.3236 -2.5152 -0.0126 24 6 2.1957 -1.2000 -0.0001 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8901 0.5137 27 1 -0.3633 0.8899 0.5139 28 1 1.6519 2.1333 -0.0004 29 1 4.5044 2.8310 -1.0264 30 1 3.7309 3.2729 0.5145 31 1 5.2759 2.3891 0.5156 32 1 8.2172 0.8790 -0.5567 33 1 8.2098 -0.9010 -0.5533 34 1 10.3816 -0.0233 -1.8855 35 1 13.4554 -0.0379 -3.1862 36 1 4.5039 -2.8360 1.0134 37 1 3.7316 -3.2699 -0.5305 38 1 5.2765 -2.3859 -0.5257 39 1 1.6521 -2.1333 -0.0001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731237408.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:19 Heat of formation + Delta-G solvation = -113.380172 kcal Electronic energy + Delta-G solvation = -22477.908886 eV Core-core repulsion = 18964.003297 eV Total energy + Delta-G solvation = -3513.905588 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.73604 -39.26246 -38.05095 -36.02227 -34.00058 -33.81581 -33.78809 -31.37839 -28.86922 -28.17464 -27.36327 -26.93115 -24.63214 -22.54404 -21.02975 -20.22886 -19.57910 -18.07139 -17.90109 -16.80879 -16.66616 -15.71013 -15.50953 -14.89182 -14.58681 -14.41039 -14.19554 -13.85517 -13.80066 -13.40206 -13.31640 -13.22722 -12.95987 -12.79958 -12.74135 -12.23278 -12.07677 -11.92558 -11.62532 -11.55667 -11.43714 -11.20873 -11.14911 -10.44311 -10.41557 -10.38855 -10.28982 -9.61536 -8.79547 -8.77705 -8.50796 -8.08115 -6.49941 -3.91887 0.89192 1.16452 2.20237 2.73262 3.11829 3.23935 3.31548 3.43195 3.73751 4.11299 4.49358 4.50349 4.53941 4.65214 5.01973 5.05171 5.06506 5.14916 5.22487 5.31001 5.32122 5.33688 5.48009 5.51360 5.54064 5.57976 5.67157 5.68937 5.71899 5.94159 6.04199 6.06724 6.19690 6.25474 6.34965 6.56920 6.72754 7.48204 7.80214 7.95840 8.48772 9.07417 9.39516 9.89530 10.67408 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.029473 B = 0.003039 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.785571 B = 9212.752843 C = 9217.255070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.061 4.061 3 C -0.130 4.130 4 C -0.033 4.033 5 C -0.127 4.127 6 C -0.109 4.109 7 C 0.514 3.486 8 O -0.503 6.503 9 O -0.317 6.317 10 C 0.056 3.944 11 C 0.439 3.561 12 O -0.574 6.574 13 N -0.553 5.553 14 C -0.301 4.301 15 H 0.107 0.893 16 C 0.024 3.976 17 N -0.897 5.897 18 Si 0.933 3.067 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.280 1.280 22 C -0.033 4.033 23 C -0.126 4.126 24 C -0.130 4.130 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.130 0.870 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.395 0.605 35 H 0.273 0.727 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.300 0.062 8.952 21.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.061 4.061 3 C -0.148 4.148 4 C -0.033 4.033 5 C -0.183 4.183 6 C -0.110 4.110 7 C 0.357 3.643 8 O -0.392 6.392 9 O -0.231 6.231 10 C -0.021 4.021 11 C 0.224 3.776 12 O -0.458 6.458 13 N -0.191 5.191 14 C -0.430 4.430 15 H 0.124 0.876 16 C -0.178 4.178 17 N -0.538 5.538 18 Si 0.760 3.240 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.033 4.033 23 C -0.182 4.182 24 C -0.148 4.148 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.148 0.852 29 H 0.102 0.898 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.228 0.772 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -19.362 0.063 8.595 21.184 hybrid contribution 1.066 -0.003 -0.164 1.079 sum -18.296 0.060 8.431 20.145 Atomic orbital electron populations 1.20835 0.90773 1.02953 1.02668 1.20058 0.96278 0.92935 0.96870 1.20781 0.92648 0.97969 1.03376 1.19839 0.93817 0.93808 0.95877 1.20951 1.00172 0.93629 1.03560 1.18840 0.89033 0.94367 1.08806 1.21284 0.88755 0.72003 0.82279 1.90847 1.69955 1.45535 1.32869 1.86744 1.21193 1.82593 1.32551 1.22815 0.76724 1.03573 0.98992 1.19295 0.83628 0.85972 0.88720 1.90572 1.58815 1.55090 1.41305 1.41708 1.03900 1.63906 1.09541 1.19776 0.90684 1.48013 0.84549 0.87564 1.25315 0.95893 0.96932 0.99664 1.69629 1.04541 1.49810 1.29826 0.85743 0.78956 0.77805 0.81521 1.19074 1.20619 1.20615 1.19839 0.93811 0.93807 0.95888 1.20945 1.00552 0.93730 1.03002 1.20779 0.92650 0.97972 1.03362 0.90740 0.91317 0.91317 0.85230 0.89765 0.90602 0.91352 0.89465 0.89467 0.77162 0.91685 0.90324 0.90400 0.91069 0.85230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.76 10.00 36.01 0.36 -0.40 16 2 C -0.06 -0.61 5.89 -104.53 -0.62 -1.22 16 3 C -0.13 -1.38 9.34 -39.64 -0.37 -1.75 16 4 C -0.03 -0.44 5.92 -104.21 -0.62 -1.05 16 5 C -0.13 -1.50 9.62 36.01 0.35 -1.15 16 6 C -0.11 -1.66 5.75 -104.98 -0.60 -2.27 16 7 C 0.51 9.05 4.33 34.61 0.15 9.20 16 8 O -0.50 -9.50 16.89 -19.25 -0.33 -9.82 16 9 O -0.32 -6.29 9.77 -47.20 -0.46 -6.75 16 10 C 0.06 1.11 5.95 36.01 0.21 1.32 16 11 C 0.44 10.74 7.86 -10.98 -0.09 10.66 16 12 O -0.57 -16.20 16.08 -14.12 -0.23 -16.43 16 13 N -0.55 -14.09 5.29 -10.96 -0.06 -14.15 16 14 C -0.30 -8.35 9.68 -14.94 -0.14 -8.49 16 15 H 0.11 3.08 7.16 -52.48 -0.38 2.71 16 16 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 17 N -0.90 -24.15 13.05 55.50 0.72 -23.43 16 18 Si 0.93 20.76 29.55 -169.99 -5.02 15.74 16 19 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 20 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 22 C -0.03 -0.44 5.92 -104.21 -0.62 -1.05 16 23 C -0.13 -1.49 9.62 36.01 0.35 -1.14 16 24 C -0.13 -1.38 9.34 -39.64 -0.37 -1.75 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 27 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 28 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.08 0.68 8.09 -51.93 -0.42 0.26 16 31 H 0.07 0.90 7.08 -51.93 -0.37 0.54 16 32 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 33 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 34 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 35 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 38 H 0.07 0.99 7.08 -51.93 -0.37 0.62 16 39 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 LS Contribution 343.35 15.07 5.17 5.17 Total: -1.00 -33.06 343.35 -7.50 -40.56 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -5.21 Total: 7.65 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -2.10 Total: 1.45 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.67 Total: -37.57 kcal Atomic # 8 Polarization: -31.99 SS G_CDS: -1.01 Total: -33.00 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.06 -7.50 -40.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731237408.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.817 kcal (2) G-P(sol) polarization free energy of solvation -33.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds