Wall clock time and date at job start Tue Mar 31 2020 06:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48498 * 109.47295 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47422 * 240.00321 * 3 2 1 6 6 H 1.48499 * 109.46831 * 120.00213 * 3 2 1 7 7 C 1.38651 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99676 * 179.97438 * 7 2 1 9 9 O 1.34833 * 120.00213 * 0.02562 * 7 2 1 10 10 C 1.35752 * 116.99998 * 174.96946 * 9 7 2 11 11 C 1.38880 * 120.06612 * 185.36244 * 10 9 7 12 12 C 1.38099 * 119.92704 * 179.69653 * 11 10 9 13 13 C 1.38300 * 120.06867 * 0.59682 * 12 11 10 14 14 C 1.50706 * 119.93257 * 179.69861 * 13 12 11 15 15 N 1.46901 * 109.47036 * 269.98224 * 14 13 12 16 16 C 1.47845 * 110.99460 * 284.01408 * 15 14 13 17 17 C 1.54910 * 104.79395 * 213.63540 * 16 15 14 18 18 C 1.55147 * 101.65196 * 37.07774 * 17 16 15 19 19 C 1.47445 * 110.99612 * 163.17648 * 15 14 13 20 20 H 1.09000 * 109.88548 * 242.65923 * 19 15 14 21 21 C 1.50699 * 109.89004 * 3.68580 * 19 15 14 22 22 O 1.20817 * 120.00101 * 51.82689 * 21 19 15 23 23 O 1.34235 * 119.99460 * 231.82645 * 21 19 15 24 24 C 1.38305 * 120.13917 * 359.67782 * 13 12 11 25 25 C 1.38094 * 120.06562 * 0.02562 * 24 13 12 26 26 H 0.97002 * 120.00393 * 180.02562 * 1 2 3 27 27 H 1.07998 * 120.03354 * 359.97012 * 11 10 9 28 28 H 1.08000 * 119.96895 * 180.31690 * 12 11 10 29 29 H 1.09003 * 109.46609 * 29.97521 * 14 13 12 30 30 H 1.08991 * 109.47124 * 149.97522 * 14 13 12 31 31 H 1.09000 * 110.37913 * 332.46654 * 16 15 14 32 32 H 1.09002 * 110.37088 * 94.81501 * 16 15 14 33 33 H 1.08993 * 110.99653 * 278.98035 * 17 16 15 34 34 H 1.09005 * 111.02475 * 155.17671 * 17 16 15 35 35 H 1.09003 * 110.70475 * 205.96451 * 18 17 16 36 36 H 1.08996 * 110.85800 * 82.79334 * 18 17 16 37 37 H 0.96708 * 116.99368 * 180.02562 * 23 21 19 38 38 H 1.07998 * 119.96588 * 180.02562 * 24 13 12 39 39 H 1.08004 * 120.03212 * 179.97438 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 1.2845 2.7465 0.0006 5 1 3.1032 1.6966 -1.2125 6 1 3.1032 1.6964 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0701 -3.5045 -0.1081 11 6 1.4367 -4.7347 -0.2278 12 6 2.1877 -5.8880 -0.3423 13 6 3.5689 -5.8201 -0.3255 14 6 4.3853 -7.0813 -0.4438 15 7 4.6408 -7.6267 0.8960 16 6 5.6871 -6.8493 1.5937 17 6 6.4425 -7.8895 2.4580 18 6 6.4424 -9.1302 1.5266 19 6 5.0739 -9.0340 0.8198 20 1 4.3497 -9.6728 1.3254 21 6 5.2073 -9.4520 -0.6219 22 8 5.8657 -8.7863 -1.3855 23 8 4.5946 -10.5640 -1.0577 24 6 4.2025 -4.5971 -0.2007 25 6 3.4572 -3.4396 -0.0920 26 1 -0.4851 -0.8400 0.0004 27 1 0.3581 -4.7889 -0.2358 28 1 1.6958 -6.8445 -0.4406 29 1 3.8376 -7.8143 -1.0361 30 1 5.3337 -6.8557 -0.9313 31 1 6.3643 -6.3916 0.8726 32 1 5.2341 -6.0868 2.2274 33 1 5.9028 -8.0950 3.3824 34 1 7.4599 -7.5588 2.6677 35 1 6.5117 -10.0491 2.1088 36 1 7.2550 -9.0720 0.8025 37 1 4.7097 -10.7918 -1.9905 38 1 5.2813 -4.5472 -0.1883 39 1 3.9526 -2.4849 0.0059 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739088708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:05 Heat of formation + Delta-G solvation = -85.080980 kcal Electronic energy + Delta-G solvation = -22943.124917 eV Core-core repulsion = 19430.446474 eV Total energy + Delta-G solvation = -3512.678443 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.25045 -39.17325 -38.40837 -36.61854 -36.26558 -32.91069 -32.03099 -30.32925 -29.94817 -28.95114 -25.37188 -24.55647 -23.73616 -22.05290 -21.40584 -20.72885 -20.18265 -18.52572 -18.33636 -17.11836 -16.75396 -16.30117 -15.77156 -15.22098 -15.10651 -14.43326 -14.06598 -13.90546 -13.68321 -13.52575 -13.46103 -13.15490 -12.90509 -12.61171 -12.43766 -12.17010 -11.76379 -11.48997 -11.35585 -11.21576 -11.11897 -11.00681 -10.72010 -10.68362 -10.61099 -10.28763 -10.23858 -9.38688 -8.76681 -8.50016 -8.20737 -7.23089 -6.75991 -4.05019 1.84191 2.18652 2.24135 2.73054 3.24317 3.28991 3.45878 3.83568 4.12737 4.18369 4.40132 4.62174 4.75233 4.97867 5.05410 5.09178 5.16666 5.20595 5.25256 5.38562 5.44052 5.53834 5.61482 5.70957 5.79970 5.81856 5.91433 5.95665 6.16773 6.24025 6.37391 6.64426 6.69653 6.80952 6.87634 7.09942 7.26830 7.36039 7.57755 7.61294 7.75075 8.41386 8.93371 9.62546 10.68128 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.029257 B = 0.003320 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.814288 B = 8432.953045 C = 8872.314211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.010 3.990 3 Si 1.096 2.904 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.472 4.472 8 H 0.083 0.917 9 O -0.203 6.203 10 C 0.159 3.841 11 C -0.196 4.196 12 C -0.054 4.054 13 C -0.175 4.175 14 C 0.098 3.902 15 N -0.495 5.495 16 C 0.041 3.959 17 C -0.126 4.126 18 C -0.129 4.129 19 C 0.078 3.922 20 H 0.116 0.884 21 C 0.467 3.533 22 O -0.511 6.511 23 O -0.516 6.516 24 C -0.062 4.062 25 C -0.229 4.229 26 H 0.282 0.718 27 H 0.115 0.885 28 H 0.110 0.890 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.408 0.592 38 H 0.104 0.896 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.269 -18.586 2.108 22.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.195 4.195 3 Si 0.920 3.080 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.548 4.548 8 H 0.101 0.899 9 O -0.107 6.107 10 C 0.105 3.895 11 C -0.215 4.215 12 C -0.073 4.073 13 C -0.177 4.177 14 C -0.028 4.028 15 N -0.221 5.221 16 C -0.086 4.086 17 C -0.164 4.164 18 C -0.168 4.168 19 C -0.031 4.031 20 H 0.134 0.866 21 C 0.308 3.692 22 O -0.398 6.398 23 O -0.327 6.327 24 C -0.080 4.080 25 C -0.249 4.249 26 H 0.092 0.908 27 H 0.133 0.867 28 H 0.128 0.872 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.267 0.733 38 H 0.122 0.878 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 11.453 -16.535 2.585 20.280 hybrid contribution 1.078 -1.940 -1.202 2.524 sum 12.531 -18.475 1.383 22.367 Atomic orbital electron populations 1.70570 1.06564 1.31647 1.42595 1.26531 0.96843 1.01114 0.95057 0.83112 0.74484 0.73367 0.77080 1.19779 1.20755 1.20733 1.22202 0.93077 0.82236 1.57285 0.89921 1.83666 1.35537 1.12245 1.79272 1.19241 0.90290 0.87390 0.92537 1.20178 0.99403 0.90394 1.11557 1.20435 0.92833 0.96506 0.97513 1.19077 0.93474 0.93124 1.11982 1.21422 0.98838 0.94615 0.87930 1.64324 1.40193 0.98624 1.18940 1.23204 0.91984 0.96517 0.96944 1.22724 1.01079 0.94132 0.98468 1.22803 0.94765 1.00295 0.98927 1.22510 0.99346 0.93452 0.87826 0.86604 1.24180 0.75219 0.77523 0.92249 1.90748 1.38892 1.52386 1.57823 1.84587 1.69977 1.43413 1.34683 1.20588 0.98101 0.91813 0.97543 1.21126 0.93727 0.98859 1.11166 0.90799 0.86713 0.87200 0.91790 0.91844 0.92887 0.89025 0.90014 0.90185 0.89624 0.90572 0.73337 0.87828 0.85512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.59 13.70 55.48 0.76 -25.83 16 2 C 0.01 0.28 5.49 -17.52 -0.10 0.18 16 3 Si 1.10 23.89 29.92 -169.99 -5.09 18.80 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 7 C -0.47 -13.46 9.49 30.88 0.29 -13.17 16 8 H 0.08 2.22 5.20 -52.49 -0.27 1.94 16 9 O -0.20 -5.81 9.16 0.04 0.00 -5.81 16 10 C 0.16 3.91 6.65 -39.11 -0.26 3.65 16 11 C -0.20 -4.23 9.99 -39.39 -0.39 -4.62 16 12 C -0.05 -1.01 9.69 -39.61 -0.38 -1.39 16 13 C -0.18 -3.14 5.22 -104.57 -0.55 -3.68 16 14 C 0.10 1.48 3.56 -4.97 -0.02 1.47 16 15 N -0.49 -6.47 5.10 -226.15 -1.15 -7.62 16 16 C 0.04 0.48 5.96 -2.30 -0.01 0.47 16 17 C -0.13 -1.07 7.08 -24.59 -0.17 -1.25 16 18 C -0.13 -1.07 6.46 -24.90 -0.16 -1.23 16 19 C 0.08 0.81 3.87 -67.87 -0.26 0.55 16 20 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 21 C 0.47 5.20 5.32 36.00 0.19 5.39 16 22 O -0.51 -7.10 14.64 -18.74 -0.27 -7.37 16 23 O -0.52 -4.44 13.42 -39.27 -0.53 -4.97 16 24 C -0.06 -1.17 9.18 -39.61 -0.36 -1.53 16 25 C -0.23 -5.13 9.17 -39.40 -0.36 -5.49 16 26 H 0.28 8.70 7.97 -40.82 -0.33 8.37 16 27 H 0.11 2.36 8.06 -52.49 -0.42 1.94 16 28 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 29 H 0.06 0.96 6.37 -51.93 -0.33 0.63 16 30 H 0.06 1.02 6.10 -51.93 -0.32 0.70 16 31 H 0.05 0.65 7.46 -51.93 -0.39 0.27 16 32 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.68 7.72 -51.93 -0.40 0.28 16 37 H 0.41 1.88 9.10 45.56 0.41 2.30 16 38 H 0.10 1.72 8.01 -52.49 -0.42 1.30 16 39 H 0.13 2.86 5.64 -52.48 -0.30 2.57 16 LS Contribution 324.80 15.07 4.89 4.89 Total: -1.00 -33.29 324.80 -8.03 -41.31 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -4.09 Total: 7.26 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: -2.55 Total: -20.66 kcal Atomic # 7 Polarization: -33.06 SS G_CDS: -0.39 Total: -33.46 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.80 Total: -18.15 kcal Atomic # 14 Polarization: 23.89 SS G_CDS: -5.09 Total: 18.80 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.29 -8.03 -41.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739088708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.768 kcal (2) G-P(sol) polarization free energy of solvation -33.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds