Wall clock time and date at job start Tue Mar 31 2020 06:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48498 * 109.47295 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47422 * 240.00321 * 3 2 1 6 6 H 1.48499 * 109.46831 * 120.00213 * 3 2 1 7 7 C 1.38651 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99676 * 179.97438 * 7 2 1 9 9 O 1.34833 * 120.00213 * 0.02562 * 7 2 1 10 10 C 1.35752 * 116.99998 * 174.96946 * 9 7 2 11 11 C 1.38880 * 120.06612 * 185.36244 * 10 9 7 12 12 C 1.38099 * 119.92704 * 179.69653 * 11 10 9 13 13 C 1.38300 * 120.06867 * 0.59682 * 12 11 10 14 14 C 1.50706 * 119.93257 * 179.69861 * 13 12 11 15 15 N 1.46901 * 109.47036 * 269.98224 * 14 13 12 16 16 C 1.47845 * 110.99460 * 284.01408 * 15 14 13 17 17 C 1.54910 * 104.79395 * 213.63540 * 16 15 14 18 18 C 1.55147 * 101.65196 * 37.07774 * 17 16 15 19 19 C 1.47445 * 110.99612 * 163.17648 * 15 14 13 20 20 H 1.09000 * 109.88548 * 242.65923 * 19 15 14 21 21 C 1.50699 * 109.89004 * 3.68580 * 19 15 14 22 22 O 1.20817 * 120.00101 * 51.82689 * 21 19 15 23 23 O 1.34235 * 119.99460 * 231.82645 * 21 19 15 24 24 C 1.38305 * 120.13917 * 359.67782 * 13 12 11 25 25 C 1.38094 * 120.06562 * 0.02562 * 24 13 12 26 26 H 0.97002 * 120.00393 * 180.02562 * 1 2 3 27 27 H 1.07998 * 120.03354 * 359.97012 * 11 10 9 28 28 H 1.08000 * 119.96895 * 180.31690 * 12 11 10 29 29 H 1.09003 * 109.46609 * 29.97521 * 14 13 12 30 30 H 1.08991 * 109.47124 * 149.97522 * 14 13 12 31 31 H 1.09000 * 110.37913 * 332.46654 * 16 15 14 32 32 H 1.09002 * 110.37088 * 94.81501 * 16 15 14 33 33 H 1.08993 * 110.99653 * 278.98035 * 17 16 15 34 34 H 1.09005 * 111.02475 * 155.17671 * 17 16 15 35 35 H 1.09003 * 110.70475 * 205.96451 * 18 17 16 36 36 H 1.08996 * 110.85800 * 82.79334 * 18 17 16 37 37 H 0.96708 * 116.99368 * 180.02562 * 23 21 19 38 38 H 1.07998 * 119.96588 * 180.02562 * 24 13 12 39 39 H 1.08004 * 120.03212 * 179.97438 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 1.2845 2.7465 0.0006 5 1 3.1032 1.6966 -1.2125 6 1 3.1032 1.6964 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0701 -3.5045 -0.1081 11 6 1.4367 -4.7347 -0.2278 12 6 2.1877 -5.8880 -0.3423 13 6 3.5689 -5.8201 -0.3255 14 6 4.3853 -7.0813 -0.4438 15 7 4.6408 -7.6267 0.8960 16 6 5.6871 -6.8493 1.5937 17 6 6.4425 -7.8895 2.4580 18 6 6.4424 -9.1302 1.5266 19 6 5.0739 -9.0340 0.8198 20 1 4.3497 -9.6728 1.3254 21 6 5.2073 -9.4520 -0.6219 22 8 5.8657 -8.7863 -1.3855 23 8 4.5946 -10.5640 -1.0577 24 6 4.2025 -4.5971 -0.2007 25 6 3.4572 -3.4396 -0.0920 26 1 -0.4851 -0.8400 0.0004 27 1 0.3581 -4.7889 -0.2358 28 1 1.6958 -6.8445 -0.4406 29 1 3.8376 -7.8143 -1.0361 30 1 5.3337 -6.8557 -0.9313 31 1 6.3643 -6.3916 0.8726 32 1 5.2341 -6.0868 2.2274 33 1 5.9028 -8.0950 3.3824 34 1 7.4599 -7.5588 2.6677 35 1 6.5117 -10.0491 2.1088 36 1 7.2550 -9.0720 0.8025 37 1 4.7097 -10.7918 -1.9905 38 1 5.2813 -4.5472 -0.1883 39 1 3.9526 -2.4849 0.0059 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739088708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:04 Heat of formation + Delta-G solvation = -108.733330 kcal Electronic energy + Delta-G solvation = -22944.150560 eV Core-core repulsion = 19430.446474 eV Total energy + Delta-G solvation = -3513.704086 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.14524 -40.88712 -39.45186 -38.27411 -37.08394 -34.53889 -33.60674 -31.92858 -30.92585 -30.29282 -27.17545 -26.04978 -24.64007 -23.69150 -22.54971 -22.03074 -21.11295 -20.26837 -19.34934 -18.72615 -17.86517 -17.32267 -17.04386 -16.64554 -16.00986 -15.88692 -15.72358 -15.61894 -15.28910 -14.98656 -14.67876 -14.29150 -14.19194 -13.85143 -13.48396 -13.05651 -12.97504 -12.88751 -12.61224 -12.48600 -12.28839 -12.18408 -12.09087 -11.94824 -11.92925 -11.87241 -11.51638 -11.28186 -10.76394 -9.87871 -9.53847 -9.02796 -8.94543 -6.25507 0.49971 0.55462 1.01745 1.48284 1.60655 1.78566 2.00923 2.35256 2.64603 2.98176 3.16989 3.32090 3.45377 3.62531 3.90759 3.95176 4.04956 4.13778 4.25645 4.27090 4.32525 4.47422 4.50235 4.52600 4.69729 4.80763 4.84163 4.94731 4.97988 5.06893 5.17920 5.20399 5.24462 5.46791 5.54042 5.64797 5.68162 5.78683 5.84198 6.02065 6.27078 6.85481 6.90320 7.61047 8.49693 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.029257 B = 0.003320 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.814288 B = 8432.953045 C = 8872.314211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.044 4.044 3 Si 1.145 2.855 4 H -0.273 1.273 5 H -0.261 1.261 6 H -0.259 1.259 7 C -0.489 4.489 8 H 0.091 0.909 9 O -0.251 6.251 10 C 0.118 3.882 11 C -0.202 4.202 12 C -0.049 4.049 13 C -0.151 4.151 14 C 0.108 3.892 15 N -0.506 5.506 16 C 0.033 3.967 17 C -0.117 4.117 18 C -0.122 4.122 19 C 0.074 3.926 20 H 0.134 0.866 21 C 0.471 3.529 22 O -0.543 6.543 23 O -0.509 6.509 24 C -0.059 4.059 25 C -0.237 4.237 26 H 0.260 0.740 27 H 0.117 0.883 28 H 0.145 0.855 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.114 0.886 36 H 0.069 0.931 37 H 0.426 0.574 38 H 0.131 0.869 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.689 -21.260 2.548 25.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.240 4.240 3 Si 0.960 3.040 4 H -0.197 1.197 5 H -0.186 1.186 6 H -0.183 1.183 7 C -0.565 4.565 8 H 0.108 0.892 9 O -0.159 6.159 10 C 0.068 3.932 11 C -0.221 4.221 12 C -0.067 4.067 13 C -0.152 4.152 14 C -0.018 4.018 15 N -0.232 5.232 16 C -0.094 4.094 17 C -0.155 4.155 18 C -0.161 4.161 19 C -0.035 4.035 20 H 0.151 0.849 21 C 0.314 3.686 22 O -0.434 6.434 23 O -0.322 6.322 24 C -0.077 4.077 25 C -0.256 4.256 26 H 0.069 0.931 27 H 0.135 0.865 28 H 0.162 0.838 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.132 0.868 36 H 0.087 0.913 37 H 0.288 0.712 38 H 0.149 0.851 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 13.900 -19.302 3.022 23.977 hybrid contribution 0.456 -1.554 -1.371 2.122 sum 14.356 -20.856 1.650 25.373 Atomic orbital electron populations 1.70708 1.07752 1.30081 1.46637 1.28397 0.96899 1.04871 0.93810 0.82595 0.73785 0.68834 0.78771 1.19743 1.18569 1.18345 1.22593 0.93676 0.82946 1.57261 0.89174 1.83647 1.36776 1.13149 1.82326 1.19795 0.91502 0.87402 0.94499 1.20448 1.00028 0.90371 1.11226 1.20809 0.93151 0.96790 0.95994 1.19564 0.93675 0.94234 1.07772 1.21269 0.97977 0.93136 0.89459 1.64201 1.41510 1.00244 1.17257 1.23253 0.91866 0.97223 0.97077 1.22713 1.01577 0.93012 0.98188 1.22818 0.93127 1.01424 0.98701 1.22672 1.01125 0.91755 0.87977 0.84866 1.24252 0.74571 0.77549 0.92263 1.90747 1.40362 1.53578 1.58667 1.84542 1.69041 1.42206 1.36372 1.20857 0.99390 0.91028 0.96460 1.21212 0.93115 0.99843 1.11462 0.93144 0.86496 0.83769 0.91133 0.92408 0.93591 0.90501 0.89018 0.88636 0.86772 0.91269 0.71224 0.85083 0.86410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.19 13.70 21.61 0.30 -57.90 16 2 C -0.04 -2.55 5.49 84.83 0.47 -2.08 16 3 Si 1.14 48.72 29.92 68.60 2.05 50.78 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 5 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 6 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 7 C -0.49 -29.17 9.49 67.92 0.64 -28.53 16 8 H 0.09 5.02 5.20 -2.91 -0.02 5.00 16 9 O -0.25 -15.26 9.16 -22.79 -0.21 -15.47 16 10 C 0.12 6.02 6.65 22.58 0.15 6.17 16 11 C -0.20 -8.77 9.99 22.39 0.22 -8.55 16 12 C -0.05 -1.74 9.69 22.25 0.22 -1.52 16 13 C -0.15 -5.10 5.22 -19.83 -0.10 -5.20 16 14 C 0.11 2.98 3.56 85.56 0.30 3.28 16 15 N -0.51 -11.71 5.10 -869.40 -4.44 -16.15 16 16 C 0.03 0.70 5.96 86.77 0.52 1.22 16 17 C -0.12 -1.59 7.08 31.98 0.23 -1.36 16 18 C -0.12 -1.55 6.46 31.78 0.21 -1.35 16 19 C 0.07 1.26 3.87 44.51 0.17 1.44 16 20 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 21 C 0.47 8.96 5.32 71.24 0.38 9.34 16 22 O -0.54 -13.72 14.64 21.99 0.32 -13.40 16 23 O -0.51 -6.95 13.42 -51.46 -0.69 -7.64 16 24 C -0.06 -2.16 9.18 22.25 0.20 -1.95 16 25 C -0.24 -10.76 9.17 22.39 0.21 -10.56 16 26 H 0.26 17.20 7.97 -92.71 -0.74 16.46 16 27 H 0.12 4.93 8.06 -2.91 -0.02 4.91 16 28 H 0.14 4.14 8.06 -2.91 -0.02 4.11 16 29 H 0.07 1.87 6.37 -2.39 -0.02 1.85 16 30 H 0.06 1.71 6.10 -2.39 -0.01 1.69 16 31 H 0.05 1.03 7.46 -2.39 -0.02 1.02 16 32 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.07 1.01 7.72 -2.39 -0.02 0.99 16 37 H 0.43 2.51 9.10 -74.05 -0.67 1.84 16 38 H 0.13 4.08 8.01 -2.91 -0.02 4.05 16 39 H 0.12 5.48 5.64 -2.91 -0.02 5.46 16 Total: -1.00 -76.47 324.80 1.59 -74.88 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 0.44 Total: 24.55 kcal Atomic # 6 Polarization: -43.46 SS G_CDS: 3.81 Total: -39.65 kcal Atomic # 7 Polarization: -69.90 SS G_CDS: -4.14 Total: -74.05 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -0.58 Total: -36.51 kcal Atomic # 14 Polarization: 48.72 SS G_CDS: 2.05 Total: 50.78 kcal Total: -76.47 1.59 -74.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739088708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.852 kcal (2) G-P(sol) polarization free energy of solvation -76.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds