Wall clock time and date at job start Tue Mar 31 2020 06:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00153 * 2 1 4 4 H 1.48495 * 109.47133 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46977 * 299.99883 * 3 2 1 6 6 H 1.48496 * 109.47065 * 59.99599 * 3 2 1 7 7 C 1.37879 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99762 * 181.96894 * 7 2 1 9 9 C 1.50696 * 119.99977 * 1.97120 * 7 2 1 10 10 H 1.09001 * 109.46910 * 175.33757 * 9 7 2 11 11 C 1.50695 * 109.47530 * 55.33425 * 9 7 2 12 12 O 1.21283 * 120.00501 * 240.00352 * 11 9 7 13 13 N 1.34779 * 120.00080 * 59.99483 * 11 9 7 14 14 C 1.46503 * 120.00328 * 180.02562 * 13 11 9 15 15 C 1.53000 * 109.46980 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.47004 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47196 * 179.97438 * 16 15 14 18 18 O 1.20819 * 119.99799 * 0.02562 * 17 16 15 19 19 O 1.34229 * 119.99790 * 179.97438 * 17 16 15 20 20 C 1.50707 * 109.47387 * 295.33233 * 9 7 2 21 21 C 1.38224 * 120.00104 * 167.22650 * 20 9 7 22 22 C 1.38237 * 120.00255 * 180.02562 * 21 20 9 23 23 C 1.38238 * 119.99745 * 359.95072 * 22 21 20 24 24 C 1.38236 * 119.99912 * 0.02562 * 23 22 21 25 25 C 1.38232 * 119.99717 * 347.20513 * 20 9 7 26 26 H 0.97003 * 120.00319 * 0.02562 * 1 2 3 27 27 H 0.97004 * 119.99602 * 0.02562 * 13 11 9 28 28 H 1.09000 * 109.46951 * 300.00008 * 14 13 11 29 29 H 1.09001 * 109.46665 * 60.00067 * 14 13 11 30 30 H 1.08997 * 109.47375 * 300.00159 * 15 14 13 31 31 H 1.09001 * 109.47013 * 60.00479 * 15 14 13 32 32 H 1.09003 * 109.46980 * 300.00643 * 16 15 14 33 33 H 1.09001 * 109.46550 * 59.99920 * 16 15 14 34 34 H 0.96700 * 116.99549 * 179.97438 * 19 17 16 35 35 H 1.08000 * 120.00315 * 359.97438 * 21 20 9 36 36 H 1.07994 * 120.00683 * 179.97438 * 22 21 20 37 37 H 1.08001 * 120.00281 * 179.72897 * 23 22 21 38 38 H 1.07996 * 120.00326 * 179.97438 * 24 23 22 39 39 H 1.08001 * 120.00068 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0840 -1.1944 0.0327 9 6 1.2516 -2.4988 -0.0438 10 1 1.9594 -3.3242 -0.1201 11 6 0.3358 -2.5100 -1.2405 12 8 -0.8613 -2.6297 -1.0870 13 7 0.8470 -2.3867 -2.4814 14 6 -0.0433 -2.3970 -3.6449 15 6 0.7848 -2.2430 -4.9221 16 6 -0.1450 -2.2545 -6.1372 17 6 0.6706 -2.1022 -7.3952 18 8 1.8722 -1.9959 -7.3270 19 8 0.0621 -2.0856 -8.5916 20 6 0.4360 -2.6512 1.2143 21 6 -0.5369 -3.6298 1.2930 22 6 -1.2854 -3.7693 2.4468 23 6 -1.0601 -2.9306 3.5224 24 6 -0.0867 -1.9523 3.4439 25 6 0.6614 -1.8125 2.2898 26 1 -0.4851 0.8400 -0.0004 27 1 1.8045 -2.2911 -2.6042 28 1 -0.5881 -3.3405 -3.6770 29 1 -0.7507 -1.5713 -3.5682 30 1 1.3300 -1.2998 -4.8902 31 1 1.4919 -3.0691 -4.9985 32 1 -0.6899 -3.1980 -6.1688 33 1 -0.8524 -1.4287 -6.0610 34 1 0.6270 -1.9854 -9.3700 35 1 -0.7130 -4.2850 0.4527 36 1 -2.0459 -4.5336 2.5081 37 1 -1.6478 -3.0367 4.4222 38 1 0.0891 -1.2968 4.2840 39 1 1.4221 -1.0484 2.2287 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594606607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:43 Heat of formation + Delta-G solvation = -115.862494 kcal Electronic energy + Delta-G solvation = -22893.802705 eV Core-core repulsion = 19379.789475 eV Total energy + Delta-G solvation = -3514.013230 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.38474 -38.93140 -37.47985 -36.40474 -35.02456 -33.58145 -32.13107 -30.79079 -29.64527 -27.89867 -26.51987 -23.92991 -22.55628 -21.23766 -20.81750 -20.45298 -19.06814 -18.22621 -16.78155 -16.69418 -16.43612 -15.77749 -15.22688 -14.87646 -14.81067 -14.72681 -13.91275 -13.61114 -13.35270 -13.17534 -12.63678 -12.38849 -12.34422 -12.13768 -11.84261 -11.80286 -11.64763 -11.28282 -11.26340 -10.98749 -10.81011 -10.72372 -10.68968 -10.41675 -10.02418 -9.64728 -9.34233 -8.70207 -8.29040 -7.97576 -7.66247 -7.37032 -6.12370 -4.28455 2.06123 2.57388 2.64188 2.86662 3.19804 3.30485 3.31987 4.13710 4.26773 4.40890 4.80106 4.90362 5.03478 5.10702 5.15680 5.47807 5.51677 5.59953 5.88121 5.90211 6.00279 6.08249 6.26087 6.32486 6.34274 6.44228 6.62326 6.70583 6.83824 6.93730 7.16261 7.24422 7.53677 7.58948 7.67516 7.70765 7.72276 7.82253 8.19264 8.30317 8.63253 8.83210 9.38182 9.71809 10.88035 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.017411 B = 0.004274 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.749039 B = 6550.208866 C = 7739.550620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.074 3.926 3 Si 0.885 3.115 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.055 3.945 10 H 0.057 0.943 11 C 0.551 3.449 12 O -0.548 6.548 13 N -0.737 5.737 14 C 0.129 3.871 15 C -0.121 4.121 16 C -0.110 4.110 17 C 0.478 3.522 18 O -0.515 6.515 19 O -0.521 6.521 20 C -0.014 4.014 21 C -0.100 4.100 22 C -0.145 4.145 23 C -0.145 4.145 24 C -0.148 4.148 25 C -0.065 4.065 26 H 0.264 0.736 27 H 0.397 0.603 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.408 0.592 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.227 -4.697 -8.934 10.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.134 4.134 3 Si 0.713 3.287 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.577 4.577 8 H 0.085 0.915 9 C 0.034 3.966 10 H 0.075 0.925 11 C 0.340 3.660 12 O -0.425 6.425 13 N -0.390 5.390 14 C 0.004 3.996 15 C -0.159 4.159 16 C -0.148 4.148 17 C 0.321 3.679 18 O -0.402 6.402 19 O -0.333 6.333 20 C -0.015 4.015 21 C -0.118 4.118 22 C -0.163 4.163 23 C -0.163 4.163 24 C -0.166 4.166 25 C -0.083 4.083 26 H 0.074 0.926 27 H 0.230 0.770 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.266 0.734 35 H 0.125 0.875 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.767 -4.674 -8.439 9.677 hybrid contribution 0.985 1.419 -0.732 1.876 sum 0.218 -3.255 -9.171 9.734 Atomic orbital electron populations 1.70090 1.05414 1.26787 1.45191 1.25053 0.94809 0.99163 0.94336 0.86630 0.80335 0.83968 0.77817 1.19480 1.20993 1.20821 1.20740 0.92959 0.88733 1.55257 0.91455 1.17896 0.92777 0.98197 0.87752 0.92511 1.21004 0.89139 0.72222 0.83663 1.90533 1.16673 1.49613 1.85667 1.45768 1.10076 1.77831 1.05370 1.20986 0.93034 1.01314 0.84298 1.21636 0.97934 1.04343 0.91960 1.21299 0.98949 1.06129 0.88424 1.23647 0.87380 0.71682 0.85200 1.90738 1.16502 1.45464 1.87541 1.84554 1.46168 1.85189 1.17346 1.19817 0.94565 0.92193 0.94908 1.20967 0.95964 0.98869 0.96040 1.20819 1.00612 1.00395 0.94475 1.20770 0.99593 0.97849 0.98133 1.20988 0.98254 0.99027 0.98355 1.21146 0.98495 0.97227 0.91420 0.92611 0.76963 0.92648 0.92232 0.90316 0.90553 0.87323 0.87257 0.73364 0.87510 0.88125 0.88239 0.88076 0.85464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.87 10.89 55.43 0.60 -22.26 16 2 C 0.07 1.86 3.99 -17.82 -0.07 1.79 16 3 Si 0.89 19.82 29.54 -169.99 -5.02 14.80 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.54 -13.08 7.12 -34.44 -0.25 -13.32 16 8 H 0.07 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.06 1.29 2.78 -94.08 -0.26 1.02 16 10 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 11 C 0.55 12.83 5.45 -10.99 -0.06 12.77 16 12 O -0.55 -14.40 13.95 5.55 0.08 -14.32 16 13 N -0.74 -14.18 5.46 -60.29 -0.33 -14.51 16 14 C 0.13 2.05 5.67 -4.04 -0.02 2.03 16 15 C -0.12 -1.51 4.62 -26.73 -0.12 -1.64 16 16 C -0.11 -1.08 5.81 -27.88 -0.16 -1.25 16 17 C 0.48 5.18 8.33 36.00 0.30 5.48 16 18 O -0.51 -7.32 16.74 -18.74 -0.31 -7.64 16 19 O -0.52 -4.31 13.42 -39.25 -0.53 -4.84 16 20 C -0.01 -0.33 4.52 -104.63 -0.47 -0.80 16 21 C -0.10 -2.28 8.21 -39.59 -0.33 -2.60 16 22 C -0.14 -2.98 10.05 -39.58 -0.40 -3.38 16 23 C -0.15 -2.90 10.05 -39.58 -0.40 -3.29 16 24 C -0.15 -3.12 10.05 -39.58 -0.40 -3.52 16 25 C -0.06 -1.52 8.20 -39.58 -0.32 -1.85 16 26 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.40 7.01 8.36 -40.82 -0.34 6.67 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 31 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 32 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.41 1.70 9.10 45.56 0.41 2.12 16 35 H 0.11 2.39 7.01 -52.49 -0.37 2.02 16 36 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 37 H 0.10 1.68 8.06 -52.49 -0.42 1.25 16 38 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 39 H 0.13 3.08 6.02 -52.49 -0.32 2.76 16 LS Contribution 333.86 15.07 5.03 5.03 Total: -1.00 -32.46 333.86 -7.82 -40.28 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -4.38 Total: 12.00 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -2.96 Total: -8.55 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.27 Total: -36.77 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.76 Total: -26.79 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.46 -7.82 -40.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594606607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.586 kcal (2) G-P(sol) polarization free energy of solvation -32.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds