Wall clock time and date at job start Tue Mar 31 2020 07:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47536 * 2 1 4 4 C 1.50692 * 109.47075 * 179.97438 * 3 2 1 5 5 O 1.20821 * 120.00466 * 0.02562 * 4 3 2 6 6 O 1.34232 * 119.99945 * 179.97438 * 4 3 2 7 7 C 1.45200 * 117.00456 * 180.02562 * 6 4 3 8 8 C 1.50693 * 109.47507 * 180.02562 * 7 6 4 9 9 O 1.21284 * 119.99937 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00055 * 179.97438 * 8 7 6 11 11 C 1.39234 * 119.99787 * 184.28933 * 10 8 7 12 12 C 1.39480 * 119.83810 * 324.71162 * 11 10 8 13 13 C 1.36373 * 120.17151 * 180.29688 * 12 11 10 14 14 C 1.40869 * 119.82638 * 359.48095 * 13 12 11 15 15 C 1.41149 * 120.16615 * 180.24677 * 14 13 12 16 16 H 1.08002 * 120.00564 * 215.01718 * 15 14 13 17 17 C 1.39907 * 119.99949 * 35.01923 * 15 14 13 18 18 N 1.30873 * 119.99679 * 355.54737 * 17 15 14 19 19 Si 1.86795 * 120.00282 * 175.54331 * 17 15 14 20 20 H 1.48497 * 109.47333 * 59.99949 * 19 17 15 21 21 H 1.48503 * 109.47069 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47361 * 299.99743 * 19 17 15 23 23 C 1.40878 * 119.67448 * 0.51928 * 14 13 12 24 24 C 1.36371 * 119.82161 * 359.73123 * 23 14 13 25 25 H 1.08998 * 109.47716 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46945 * 300.00714 * 1 2 3 27 27 H 1.09000 * 109.46750 * 59.99917 * 1 2 3 28 28 H 1.08998 * 109.47066 * 239.98987 * 2 1 3 29 29 H 1.09008 * 109.46569 * 119.99825 * 2 1 3 30 30 H 1.09006 * 109.47157 * 59.99357 * 3 2 1 31 31 H 1.09001 * 109.46719 * 300.00111 * 3 2 1 32 32 H 1.09005 * 109.46837 * 60.00183 * 7 6 4 33 33 H 1.09001 * 109.46863 * 300.01059 * 7 6 4 34 34 H 0.96994 * 119.99721 * 4.29555 * 10 8 7 35 35 H 1.07997 * 119.91386 * 0.02562 * 12 11 10 36 36 H 1.08003 * 120.08733 * 179.70254 * 13 12 11 37 37 H 0.97006 * 120.00240 * 180.02562 * 18 17 15 38 38 H 1.07991 * 120.08734 * 179.71251 * 23 14 13 39 39 H 1.08005 * 119.91371 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5470 1.4423 0.0006 5 8 4.1511 0.3960 0.0006 6 8 4.2183 2.6047 0.0002 7 6 5.6683 2.5288 0.0003 8 6 6.2444 3.9212 0.0004 9 8 5.5056 4.8831 0.0009 10 7 7.5805 4.0978 0.0011 11 6 8.1131 5.3810 0.0914 12 6 7.4597 6.4485 -0.5242 13 6 7.9785 7.7072 -0.4451 14 6 9.1718 7.9296 0.2697 15 6 9.7123 9.2303 0.3605 16 1 10.7831 9.3708 0.3691 17 6 8.8609 10.3377 0.4393 18 7 7.5660 10.1758 0.3413 19 14 9.5725 12.0473 0.6846 20 1 10.4802 12.3725 -0.4447 21 1 8.4692 13.0401 0.7352 22 1 10.3336 12.0886 1.9591 23 6 9.8262 6.8464 0.8887 24 6 9.2979 5.5926 0.7965 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5140 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9562 -0.8900 32 1 6.0042 1.9963 -0.8895 33 1 6.0042 1.9968 0.8904 34 1 8.1710 3.3308 -0.0615 35 1 6.5427 6.2771 -1.0684 36 1 7.4739 8.5320 -0.9263 37 1 6.9756 10.9436 0.3956 38 1 10.7438 7.0086 1.4344 39 1 9.7985 4.7610 1.2702 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005280316.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:23 Heat of formation + Delta-G solvation = -128.538246 kcal Electronic energy + Delta-G solvation = -21809.073657 eV Core-core repulsion = 18294.510765 eV Total energy + Delta-G solvation = -3514.562892 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.83860 -41.03195 -39.10566 -37.68853 -36.20426 -35.43799 -34.75792 -31.66276 -31.27296 -30.13089 -28.68703 -26.55366 -23.70041 -23.23367 -22.74134 -21.49604 -21.30485 -19.24354 -18.88272 -18.85705 -18.01385 -17.59544 -17.23999 -16.88610 -16.47949 -15.79459 -15.61459 -15.31047 -14.92713 -14.50007 -14.31559 -14.11645 -13.96271 -13.63146 -13.58701 -13.33566 -12.98394 -12.83773 -12.76186 -12.69485 -12.32241 -12.08964 -11.93940 -11.80197 -11.72389 -11.64896 -11.64292 -11.23270 -10.82141 -10.53480 -9.46739 -8.78524 -8.50197 -6.33847 0.75477 1.09292 1.12335 1.25432 1.39209 1.42747 1.51945 1.68248 2.23583 2.42204 2.80826 3.55187 3.66039 3.70187 3.93223 4.01211 4.02332 4.07216 4.42995 4.47017 4.47331 4.64020 4.70461 4.89109 4.96849 5.10260 5.13839 5.15048 5.23997 5.30668 5.34247 5.39284 5.44649 5.70053 5.84217 6.04949 6.13278 6.33675 6.54528 6.66193 6.69986 6.95135 7.00351 7.27625 8.42544 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.032723 B = 0.002599 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.467847 B =10772.173874 C =11498.648462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.110 4.110 3 C -0.112 4.112 4 C 0.462 3.538 5 O -0.533 6.533 6 O -0.353 6.353 7 C 0.060 3.940 8 C 0.498 3.502 9 O -0.559 6.559 10 N -0.635 5.635 11 C 0.016 3.984 12 C -0.108 4.108 13 C -0.170 4.170 14 C 0.066 3.934 15 C -0.495 4.495 16 H 0.081 0.919 17 C 0.021 3.979 18 N -0.846 5.846 19 Si 0.992 3.008 20 H -0.257 1.257 21 H -0.274 1.274 22 H -0.259 1.259 23 C -0.210 4.210 24 C -0.103 4.103 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.423 0.577 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.283 0.717 38 H 0.114 0.886 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.090 -17.146 -0.315 18.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.148 4.148 3 C -0.149 4.149 4 C 0.307 3.693 5 O -0.422 6.422 6 O -0.268 6.268 7 C -0.017 4.017 8 C 0.285 3.715 9 O -0.436 6.436 10 N -0.282 5.282 11 C -0.077 4.077 12 C -0.128 4.128 13 C -0.190 4.190 14 C 0.064 3.936 15 C -0.526 4.526 16 H 0.099 0.901 17 C -0.190 4.190 18 N -0.474 5.474 19 Si 0.812 3.188 20 H -0.181 1.181 21 H -0.198 1.198 22 H -0.184 1.184 23 C -0.229 4.229 24 C -0.123 4.123 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.261 0.739 35 H 0.115 0.885 36 H 0.123 0.877 37 H 0.093 0.907 38 H 0.132 0.868 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.647 -16.678 -0.306 18.789 hybrid contribution 0.548 0.625 0.028 0.832 sum -8.099 -16.053 -0.278 17.983 Atomic orbital electron populations 1.21764 0.93294 1.02804 1.02843 1.21368 0.97126 0.93280 1.03027 1.21661 0.84110 1.01411 1.07714 1.24628 0.93182 0.80467 0.71056 1.90648 1.71226 1.33452 1.46881 1.86592 1.20640 1.35749 1.83853 1.22690 0.78307 0.93436 1.07262 1.20752 0.82716 0.91221 0.76813 1.90756 1.59936 1.43611 1.49331 1.42629 1.05985 1.07694 1.71897 1.17296 0.98284 0.84445 1.07654 1.20669 0.98887 0.93264 0.99955 1.21172 0.99761 0.95322 1.02728 1.18094 0.92301 0.93829 0.89405 1.19755 0.94818 0.91361 1.46663 0.90100 1.26873 0.94787 1.05355 0.92018 1.69905 1.04942 1.33920 1.38602 0.85109 0.78482 0.75194 0.79990 1.18144 1.19830 1.18362 1.20970 1.03169 0.93063 1.05735 1.20456 0.95712 0.97371 0.98772 0.91607 0.91772 0.91732 0.91763 0.91806 0.85951 0.85879 0.85614 0.85699 0.73852 0.88503 0.87739 0.90694 0.86772 0.84278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 71.98 0.71 -0.65 16 2 C -0.11 -1.44 5.22 30.59 0.16 -1.28 16 3 C -0.11 -1.62 5.81 29.84 0.17 -1.45 16 4 C 0.46 10.26 7.96 71.23 0.57 10.83 16 5 O -0.53 -13.62 15.73 21.98 0.35 -13.27 16 6 O -0.35 -9.50 9.75 -45.09 -0.44 -9.94 16 7 C 0.06 1.42 5.95 71.23 0.42 1.84 16 8 C 0.50 16.80 7.74 87.65 0.68 17.48 16 9 O -0.56 -25.34 13.92 15.76 0.22 -25.12 16 10 N -0.63 -20.13 5.30 -303.11 -1.61 -21.74 16 11 C 0.02 0.70 6.31 38.57 0.24 0.94 16 12 C -0.11 -5.50 8.61 22.13 0.19 -5.30 16 13 C -0.17 -9.53 8.61 22.48 0.19 -9.34 16 14 C 0.07 3.62 5.55 -21.27 -0.12 3.51 16 15 C -0.50 -27.03 9.02 23.39 0.21 -26.82 16 16 H 0.08 4.14 7.85 -2.91 -0.02 4.12 16 17 C 0.02 1.11 5.42 85.24 0.46 1.57 16 18 N -0.85 -47.12 10.61 21.82 0.23 -46.89 16 19 Si 0.99 39.63 29.56 68.60 2.03 41.66 16 20 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 21 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 22 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 23 C -0.21 -9.86 9.74 22.48 0.22 -9.64 16 24 C -0.10 -4.19 9.90 22.13 0.22 -3.97 16 25 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 27 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.06 0.93 8.10 -2.39 -0.02 0.91 16 29 H 0.06 0.93 8.10 -2.38 -0.02 0.91 16 30 H 0.12 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.13 2.32 8.13 -2.38 -0.02 2.30 16 33 H 0.13 2.35 8.13 -2.39 -0.02 2.33 16 34 H 0.42 9.05 8.82 -92.71 -0.82 8.23 16 35 H 0.10 5.07 6.22 -2.91 -0.02 5.05 16 36 H 0.10 6.30 6.15 -2.91 -0.02 6.28 16 37 H 0.28 14.47 8.30 -92.70 -0.77 13.70 16 38 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 39 H 0.14 4.32 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -73.80 338.59 5.37 -68.43 By element: Atomic # 1 Polarization: 28.90 SS G_CDS: 0.25 Total: 29.15 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: 4.34 Total: -22.29 kcal Atomic # 7 Polarization: -67.26 SS G_CDS: -1.38 Total: -68.63 kcal Atomic # 8 Polarization: -48.45 SS G_CDS: 0.13 Total: -48.33 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.66 kcal Total: -73.80 5.37 -68.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005280316.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.104 kcal (2) G-P(sol) polarization free energy of solvation -73.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds