Wall clock time and date at job start Tue Mar 31 2020 06:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47335 * 2 1 4 4 C 1.53007 * 109.46836 * 119.99778 * 2 1 3 5 5 C 1.50697 * 109.46853 * 175.00109 * 4 2 1 6 6 O 1.21265 * 120.00414 * 359.97438 * 5 4 2 7 7 N 1.34783 * 119.99653 * 179.97438 * 5 4 2 8 8 C 1.39262 * 119.99909 * 185.27310 * 7 5 4 9 9 C 1.38838 * 120.16749 * 34.94197 * 8 7 5 10 10 C 1.38028 * 120.07556 * 179.97438 * 9 8 7 11 11 C 1.38593 * 120.42465 * 359.97438 * 10 9 8 12 12 C 1.37763 * 120.33902 * 0.02692 * 11 10 9 13 13 C 1.39783 * 119.91597 * 359.97438 * 12 11 10 14 14 C 1.47327 * 120.20823 * 179.97438 * 13 12 11 15 15 O 1.21541 * 119.99618 * 175.04109 * 14 13 12 16 16 O 1.34778 * 120.00023 * 355.04505 * 14 13 12 17 17 C 1.34855 * 116.99851 * 179.97438 * 16 14 13 18 18 H 1.08004 * 120.00445 * 0.02562 * 17 16 14 19 19 C 1.38801 * 120.00099 * 179.97438 * 17 16 14 20 20 N 1.31426 * 119.99912 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00207 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47261 * 90.00147 * 21 19 17 23 23 H 1.48498 * 109.47011 * 210.00280 * 21 19 17 24 24 H 1.48498 * 109.46959 * 329.99999 * 21 19 17 25 25 H 1.08995 * 109.47175 * 300.00510 * 1 2 3 26 26 H 1.08999 * 109.46875 * 60.00472 * 1 2 3 27 27 H 1.08998 * 109.47225 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47175 * 239.99490 * 2 1 3 29 29 H 1.08998 * 109.47148 * 59.99185 * 3 2 1 30 30 H 1.08996 * 109.47319 * 179.97438 * 3 2 1 31 31 H 1.09006 * 109.47084 * 299.99645 * 3 2 1 32 32 H 1.08999 * 109.47308 * 54.99880 * 4 2 1 33 33 H 1.09003 * 109.46836 * 295.00275 * 4 2 1 34 34 H 0.97001 * 119.99789 * 5.27651 * 7 5 4 35 35 H 1.07995 * 119.96188 * 0.24787 * 9 8 7 36 36 H 1.08003 * 119.78787 * 179.97438 * 10 9 8 37 37 H 1.07998 * 119.82810 * 180.02562 * 11 10 9 38 38 H 1.08002 * 120.04266 * 179.97438 * 12 11 10 39 39 H 0.96999 * 120.00057 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.8294 1.1890 6 8 4.1449 -0.3749 0.2402 7 7 4.2149 -1.4313 2.1897 8 6 5.6075 -1.4348 2.1888 9 6 6.3077 -0.3411 1.6979 10 6 7.6879 -0.3464 1.6984 11 6 8.3854 -1.4396 2.1877 12 6 7.7081 -2.5341 2.6789 13 6 6.3103 -2.5438 2.6851 14 6 5.5795 -3.7111 3.2084 15 8 4.3676 -3.6801 3.2958 16 8 6.2547 -4.8133 3.5901 17 6 5.5257 -5.8457 4.0603 18 1 4.4501 -5.7658 4.1170 19 6 6.1574 -7.0116 4.4704 20 7 7.4662 -7.1092 4.4009 21 14 5.1475 -8.4421 5.1210 22 1 4.7726 -9.3357 3.9957 23 1 5.9492 -9.2037 6.1120 24 1 3.9177 -7.9239 5.7724 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4424 0.0005 31 1 1.6768 1.9563 -0.8901 32 1 1.6053 -1.7198 1.2953 33 1 1.7515 -0.1582 2.1370 34 1 3.7292 -1.8620 2.9105 35 1 5.7718 0.5167 1.3193 36 1 8.2279 0.5067 1.3150 37 1 9.4653 -1.4333 2.1839 38 1 8.2564 -3.3835 3.0586 39 1 7.9077 -7.9238 4.6878 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027158430.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:40 Heat of formation + Delta-G solvation = -100.547335 kcal Electronic energy + Delta-G solvation = -22939.541078 eV Core-core repulsion = 19426.191963 eV Total energy + Delta-G solvation = -3513.349115 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.56923 -39.14923 -37.96894 -35.78146 -35.36509 -34.21301 -32.29983 -30.87888 -29.98274 -27.76079 -27.17028 -25.66439 -23.38830 -22.81780 -20.69223 -20.34131 -19.70333 -17.85979 -17.38495 -17.08471 -16.73770 -15.68089 -15.42413 -14.96196 -14.62583 -14.51515 -14.33098 -13.98459 -13.82231 -13.76170 -13.38003 -12.66974 -12.50826 -12.38274 -12.23195 -11.93003 -11.77107 -11.59310 -11.30414 -11.21287 -11.19846 -10.94338 -10.75808 -10.57686 -10.50370 -10.08141 -9.94814 -9.62472 -9.09657 -8.71646 -8.59042 -7.84594 -6.54617 -4.17696 1.19483 1.63630 2.78909 3.06905 3.12333 3.18255 3.32187 3.51171 3.84125 4.29976 4.47536 4.66120 4.78096 4.84511 5.05982 5.17289 5.27314 5.29827 5.41639 5.49823 5.53110 5.58009 5.59401 5.76818 5.78589 5.79924 5.91055 6.04388 6.18128 6.28016 6.33918 6.40224 6.56577 6.73895 6.81303 6.86204 7.24378 7.27918 7.70933 7.84478 8.32220 8.59903 8.93614 9.71022 10.62665 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.015919 B = 0.004396 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.452920 B = 6367.681683 C = 7996.581613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.081 4.081 3 C -0.153 4.153 4 C -0.137 4.137 5 C 0.512 3.488 6 O -0.529 6.529 7 N -0.658 5.658 8 C 0.196 3.804 9 C -0.137 4.137 10 C -0.088 4.088 11 C -0.150 4.150 12 C -0.053 4.053 13 C -0.122 4.122 14 C 0.438 3.562 15 O -0.564 6.564 16 O -0.199 6.199 17 C -0.376 4.376 18 H 0.099 0.901 19 C 0.042 3.958 20 N -0.856 5.856 21 Si 0.946 3.054 22 H -0.272 1.272 23 H -0.277 1.277 24 H -0.265 1.265 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.050 0.950 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.426 0.574 35 H 0.134 0.866 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.144 0.856 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.004 13.305 -4.491 15.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.100 4.100 3 C -0.210 4.210 4 C -0.177 4.177 5 C 0.301 3.699 6 O -0.406 6.406 7 N -0.309 5.309 8 C 0.099 3.901 9 C -0.158 4.158 10 C -0.107 4.107 11 C -0.169 4.169 12 C -0.072 4.072 13 C -0.126 4.126 14 C 0.288 3.712 15 O -0.464 6.464 16 O -0.104 6.104 17 C -0.452 4.452 18 H 0.116 0.884 19 C -0.163 4.163 20 N -0.492 5.492 21 Si 0.770 3.230 22 H -0.198 1.198 23 H -0.202 1.202 24 H -0.190 1.190 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.097 0.903 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.116 0.884 33 H 0.113 0.887 34 H 0.270 0.730 35 H 0.152 0.848 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.161 0.839 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.789 13.434 -5.047 15.475 hybrid contribution -0.611 -1.065 0.689 1.408 sum -6.400 12.369 -4.358 14.593 Atomic orbital electron populations 1.21859 0.94972 1.01850 1.01818 1.20865 0.95055 0.96805 0.97243 1.21964 1.03149 0.95028 1.00881 1.21777 0.91370 1.03565 1.00944 1.20895 0.90533 0.76927 0.81569 1.90642 1.70360 1.47043 1.32533 1.43940 1.04774 1.55226 1.26924 1.17640 0.83093 0.92336 0.97029 1.20938 0.94233 0.97510 1.03091 1.21102 0.93547 0.98212 0.97796 1.21060 1.00048 0.94131 1.01671 1.21462 0.92473 0.98319 0.94946 1.19243 0.93903 0.92471 1.06999 1.20557 0.85827 0.84259 0.80570 1.90401 1.15338 1.82801 1.57891 1.83906 1.39574 1.21077 1.65891 1.21319 0.92263 0.90445 1.41189 0.88360 1.25404 0.96180 0.98149 0.96570 1.69976 1.07970 1.27978 1.43241 0.85630 0.79077 0.79538 0.78732 1.19763 1.20194 1.18978 0.92659 0.92480 0.92557 0.90348 0.93410 0.90702 0.93044 0.88370 0.88674 0.72992 0.84835 0.85827 0.85659 0.83855 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.19 37.16 0.34 -0.93 16 2 C -0.08 -0.87 2.57 -90.62 -0.23 -1.11 16 3 C -0.15 -1.63 8.93 37.15 0.33 -1.30 16 4 C -0.14 -1.59 5.18 -27.88 -0.14 -1.73 16 5 C 0.51 7.98 7.27 -10.98 -0.08 7.90 16 6 O -0.53 -9.26 11.76 5.57 0.07 -9.19 16 7 N -0.66 -11.38 4.69 -9.67 -0.05 -11.42 16 8 C 0.20 3.64 6.26 -83.47 -0.52 3.12 16 9 C -0.14 -2.24 8.63 -39.44 -0.34 -2.58 16 10 C -0.09 -1.25 10.03 -39.53 -0.40 -1.65 16 11 C -0.15 -2.25 10.02 -39.62 -0.40 -2.65 16 12 C -0.05 -0.98 9.61 -39.18 -0.38 -1.36 16 13 C -0.12 -2.55 5.89 -104.83 -0.62 -3.16 16 14 C 0.44 10.89 7.82 34.43 0.27 11.16 16 15 O -0.56 -14.17 13.14 -19.30 -0.25 -14.42 16 16 O -0.20 -5.58 9.00 -21.77 -0.20 -5.78 16 17 C -0.38 -10.79 9.65 30.94 0.30 -10.49 16 18 H 0.10 2.80 6.86 -52.48 -0.36 2.44 16 19 C 0.04 1.15 5.50 -17.52 -0.10 1.06 16 20 N -0.86 -24.26 13.67 55.49 0.76 -23.51 16 21 Si 0.95 20.60 29.55 -169.99 -5.02 15.58 16 22 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 23 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 24 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.97 7.95 -51.93 -0.41 0.55 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.96 5.95 -51.93 -0.31 0.65 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.43 7.44 6.31 -40.82 -0.26 7.18 16 35 H 0.13 2.08 6.54 -52.49 -0.34 1.74 16 36 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 37 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 38 H 0.14 2.77 7.62 -52.49 -0.40 2.37 16 39 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 332.32 15.07 5.01 5.01 Total: -1.00 -31.82 332.32 -6.67 -38.49 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -5.02 Total: 8.97 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -1.96 Total: -3.73 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: 0.71 Total: -34.93 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -0.38 Total: -29.38 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.82 -6.67 -38.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027158430.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.060 kcal (2) G-P(sol) polarization free energy of solvation -31.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds