Wall clock time and date at job start Tue Mar 31 2020 06:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47335 * 2 1 4 4 C 1.53007 * 109.46836 * 119.99778 * 2 1 3 5 5 C 1.50697 * 109.46853 * 175.00109 * 4 2 1 6 6 O 1.21265 * 120.00414 * 359.97438 * 5 4 2 7 7 N 1.34783 * 119.99653 * 179.97438 * 5 4 2 8 8 C 1.39262 * 119.99909 * 185.27310 * 7 5 4 9 9 C 1.38838 * 120.16749 * 34.94197 * 8 7 5 10 10 C 1.38028 * 120.07556 * 179.97438 * 9 8 7 11 11 C 1.38593 * 120.42465 * 359.97438 * 10 9 8 12 12 C 1.37763 * 120.33902 * 0.02692 * 11 10 9 13 13 C 1.39783 * 119.91597 * 359.97438 * 12 11 10 14 14 C 1.47327 * 120.20823 * 179.97438 * 13 12 11 15 15 O 1.21541 * 119.99618 * 175.04109 * 14 13 12 16 16 O 1.34778 * 120.00023 * 355.04505 * 14 13 12 17 17 C 1.34855 * 116.99851 * 179.97438 * 16 14 13 18 18 H 1.08004 * 120.00445 * 0.02562 * 17 16 14 19 19 C 1.38801 * 120.00099 * 179.97438 * 17 16 14 20 20 N 1.31426 * 119.99912 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00207 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47261 * 90.00147 * 21 19 17 23 23 H 1.48498 * 109.47011 * 210.00280 * 21 19 17 24 24 H 1.48498 * 109.46959 * 329.99999 * 21 19 17 25 25 H 1.08995 * 109.47175 * 300.00510 * 1 2 3 26 26 H 1.08999 * 109.46875 * 60.00472 * 1 2 3 27 27 H 1.08998 * 109.47225 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47175 * 239.99490 * 2 1 3 29 29 H 1.08998 * 109.47148 * 59.99185 * 3 2 1 30 30 H 1.08996 * 109.47319 * 179.97438 * 3 2 1 31 31 H 1.09006 * 109.47084 * 299.99645 * 3 2 1 32 32 H 1.08999 * 109.47308 * 54.99880 * 4 2 1 33 33 H 1.09003 * 109.46836 * 295.00275 * 4 2 1 34 34 H 0.97001 * 119.99789 * 5.27651 * 7 5 4 35 35 H 1.07995 * 119.96188 * 0.24787 * 9 8 7 36 36 H 1.08003 * 119.78787 * 179.97438 * 10 9 8 37 37 H 1.07998 * 119.82810 * 180.02562 * 11 10 9 38 38 H 1.08002 * 120.04266 * 179.97438 * 12 11 10 39 39 H 0.96999 * 120.00057 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.8294 1.1890 6 8 4.1449 -0.3749 0.2402 7 7 4.2149 -1.4313 2.1897 8 6 5.6075 -1.4348 2.1888 9 6 6.3077 -0.3411 1.6979 10 6 7.6879 -0.3464 1.6984 11 6 8.3854 -1.4396 2.1877 12 6 7.7081 -2.5341 2.6789 13 6 6.3103 -2.5438 2.6851 14 6 5.5795 -3.7111 3.2084 15 8 4.3676 -3.6801 3.2958 16 8 6.2547 -4.8133 3.5901 17 6 5.5257 -5.8457 4.0603 18 1 4.4501 -5.7658 4.1170 19 6 6.1574 -7.0116 4.4704 20 7 7.4662 -7.1092 4.4009 21 14 5.1475 -8.4421 5.1210 22 1 4.7726 -9.3357 3.9957 23 1 5.9492 -9.2037 6.1120 24 1 3.9177 -7.9239 5.7724 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4424 0.0005 31 1 1.6768 1.9563 -0.8901 32 1 1.6053 -1.7198 1.2953 33 1 1.7515 -0.1582 2.1370 34 1 3.7292 -1.8620 2.9105 35 1 5.7718 0.5167 1.3193 36 1 8.2279 0.5067 1.3150 37 1 9.4653 -1.4333 2.1839 38 1 8.2564 -3.3835 3.0586 39 1 7.9077 -7.9238 4.6878 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000027158430.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:39 Heat of formation + Delta-G solvation = -119.217060 kcal Electronic energy + Delta-G solvation = -22940.350658 eV Core-core repulsion = 19426.191963 eV Total energy + Delta-G solvation = -3514.158695 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.98069 -40.86456 -39.44197 -37.36993 -36.65387 -35.61344 -34.35540 -32.34424 -31.23065 -28.84891 -27.94088 -27.66002 -24.99938 -24.12240 -22.16175 -21.69412 -20.77504 -19.92081 -19.00113 -18.46815 -18.08965 -17.19428 -16.85630 -16.51527 -16.34553 -16.07825 -15.70304 -15.29621 -15.15835 -14.74720 -14.66411 -14.32503 -13.88908 -13.64597 -13.36548 -13.13463 -13.05008 -12.98936 -12.76413 -12.52321 -12.43370 -12.17566 -12.11643 -12.04165 -11.79990 -11.60401 -11.45111 -11.04227 -10.77144 -10.74138 -10.02137 -9.21214 -8.58904 -6.35788 -0.26578 0.29007 1.33231 1.36182 1.50952 1.54249 1.77565 2.07013 2.08823 2.66939 2.78989 3.02147 3.61862 3.82552 3.85110 3.99674 4.10454 4.21772 4.33592 4.40149 4.43999 4.60758 4.65822 4.68826 4.74770 4.85868 4.95635 5.04781 5.10903 5.11412 5.23916 5.28979 5.29849 5.41409 5.46806 5.48692 5.54916 5.77031 5.94079 6.36123 6.58148 6.85643 7.06011 7.67947 8.61574 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.015919 B = 0.004396 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.452920 B = 6367.681683 C = 7996.581613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.080 4.080 3 C -0.150 4.150 4 C -0.132 4.132 5 C 0.509 3.491 6 O -0.548 6.548 7 N -0.666 5.666 8 C 0.188 3.812 9 C -0.142 4.142 10 C -0.062 4.062 11 C -0.139 4.139 12 C -0.062 4.062 13 C -0.162 4.162 14 C 0.438 3.562 15 O -0.574 6.574 16 O -0.230 6.230 17 C -0.419 4.419 18 H 0.087 0.913 19 C -0.003 4.003 20 N -0.897 5.897 21 Si 1.020 2.980 22 H -0.262 1.262 23 H -0.260 1.260 24 H -0.260 1.260 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.120 0.880 34 H 0.422 0.578 35 H 0.143 0.857 36 H 0.172 0.828 37 H 0.164 0.836 38 H 0.125 0.875 39 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.386 14.889 -4.903 16.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.099 4.099 3 C -0.207 4.207 4 C -0.172 4.172 5 C 0.299 3.701 6 O -0.426 6.426 7 N -0.315 5.315 8 C 0.091 3.909 9 C -0.162 4.162 10 C -0.080 4.080 11 C -0.157 4.157 12 C -0.081 4.081 13 C -0.166 4.166 14 C 0.289 3.711 15 O -0.474 6.474 16 O -0.137 6.137 17 C -0.494 4.494 18 H 0.105 0.895 19 C -0.204 4.204 20 N -0.534 5.534 21 Si 0.838 3.162 22 H -0.186 1.186 23 H -0.184 1.184 24 H -0.184 1.184 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.121 0.879 33 H 0.138 0.862 34 H 0.265 0.735 35 H 0.161 0.839 36 H 0.189 0.811 37 H 0.182 0.818 38 H 0.143 0.857 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.178 15.051 -5.477 17.167 hybrid contribution -0.449 -1.310 0.705 1.553 sum -6.627 13.742 -4.772 15.985 Atomic orbital electron populations 1.21817 0.92901 1.02358 1.02897 1.20867 0.96681 0.96538 0.95791 1.21919 1.01560 0.95131 1.02098 1.21883 0.88235 1.04463 1.02578 1.21619 0.92012 0.75848 0.80601 1.90623 1.71184 1.47785 1.33046 1.44094 1.04545 1.55558 1.27323 1.17918 0.83903 0.92304 0.96786 1.21187 0.95356 0.96849 1.02786 1.21655 0.92742 0.98875 0.94723 1.21431 1.01881 0.92616 0.99776 1.21464 0.91656 0.99310 0.95689 1.19184 0.94951 0.92031 1.10439 1.21458 0.86189 0.84507 0.78933 1.90361 1.15982 1.83191 1.57881 1.83931 1.40296 1.22039 1.67477 1.21535 0.92145 0.91871 1.43885 0.89487 1.26594 0.97507 1.00408 0.95889 1.70063 1.09683 1.29294 1.44343 0.84593 0.77525 0.75517 0.78542 1.18628 1.18386 1.18439 0.91379 0.91612 0.92378 0.92385 0.91973 0.93058 0.92077 0.87886 0.86215 0.73455 0.83885 0.81078 0.81817 0.85731 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.19 71.98 0.66 -1.47 16 2 C -0.08 -1.62 2.57 -10.79 -0.03 -1.65 16 3 C -0.15 -2.96 8.93 71.98 0.64 -2.31 16 4 C -0.13 -2.93 5.18 29.85 0.15 -2.77 16 5 C 0.51 15.71 7.27 87.66 0.64 16.35 16 6 O -0.55 -18.98 11.76 -2.98 -0.04 -19.01 16 7 N -0.67 -23.31 4.69 -302.91 -1.42 -24.73 16 8 C 0.19 7.02 6.26 38.62 0.24 7.26 16 9 C -0.14 -4.34 8.63 22.36 0.19 -4.15 16 10 C -0.06 -1.53 10.03 22.30 0.22 -1.30 16 11 C -0.14 -3.79 10.02 22.24 0.22 -3.57 16 12 C -0.06 -2.33 9.61 22.53 0.22 -2.12 16 13 C -0.16 -6.98 5.89 -20.00 -0.12 -7.09 16 14 C 0.44 23.02 7.82 70.21 0.55 23.57 16 15 O -0.57 -30.31 13.14 19.70 0.26 -30.05 16 16 O -0.23 -13.73 9.00 10.87 0.10 -13.63 16 17 C -0.42 -25.27 9.65 67.95 0.66 -24.61 16 18 H 0.09 5.24 6.86 -2.91 -0.02 5.22 16 19 C 0.00 -0.17 5.50 84.89 0.47 0.30 16 20 N -0.90 -52.50 13.67 21.63 0.30 -52.20 16 21 Si 1.02 42.76 29.55 68.60 2.03 44.79 16 22 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 23 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 24 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 25 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.06 1.41 7.95 -2.39 -0.02 1.39 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.05 1.26 5.95 -2.39 -0.01 1.25 16 31 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.42 15.21 6.31 -92.71 -0.59 14.62 16 35 H 0.14 4.15 6.54 -2.91 -0.02 4.13 16 36 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16 37 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 38 H 0.12 5.08 7.62 -2.91 -0.02 5.06 16 39 H 0.28 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -73.33 332.32 6.43 -66.90 By element: Atomic # 1 Polarization: 31.03 SS G_CDS: 0.49 Total: 31.52 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 4.72 Total: -3.57 kcal Atomic # 7 Polarization: -75.81 SS G_CDS: -1.12 Total: -76.93 kcal Atomic # 8 Polarization: -63.02 SS G_CDS: 0.32 Total: -62.70 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -73.33 6.43 -66.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027158430.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.319 kcal (2) G-P(sol) polarization free energy of solvation -73.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds