Wall clock time and date at job start Tue Mar 31 2020 07:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34232 * 117.00428 * 2 1 4 4 O 1.20823 * 119.99656 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00344 * 179.97438 * 3 2 1 6 6 C 1.52993 * 109.47396 * 204.99870 * 5 3 2 7 7 C 1.52996 * 109.47053 * 84.99604 * 5 3 2 8 8 N 1.46507 * 109.47115 * 325.00153 * 5 3 2 9 9 C 1.34771 * 119.99873 * 179.97438 * 8 5 3 10 10 O 1.21551 * 120.00219 * 0.02562 * 9 8 5 11 11 C 1.47892 * 120.00019 * 179.97438 * 9 8 5 12 12 C 1.39921 * 120.02340 * 359.97438 * 11 9 8 13 13 C 1.38327 * 120.35760 * 180.02562 * 12 11 9 14 14 C 1.37745 * 120.41334 * 359.97438 * 13 12 11 15 15 C 1.40744 * 120.03985 * 359.97438 * 14 13 12 16 16 C 1.41440 * 120.17902 * 180.02562 * 15 14 13 17 17 H 1.07995 * 119.99720 * 24.39575 * 16 15 14 18 18 C 1.39937 * 120.00148 * 204.39015 * 16 15 14 19 19 N 1.30828 * 120.00202 * 17.85017 * 18 16 15 20 20 Si 1.86804 * 120.00094 * 197.84477 * 18 16 15 21 21 H 1.48498 * 109.46884 * 90.00045 * 20 18 16 22 22 H 1.48493 * 109.47017 * 210.00108 * 20 18 16 23 23 H 1.48500 * 109.46917 * 330.00618 * 20 18 16 24 24 C 1.38995 * 120.02504 * 180.02562 * 11 9 8 25 25 H 1.09004 * 109.46645 * 59.99985 * 1 2 3 26 26 H 1.08993 * 109.47663 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47472 * 300.00612 * 1 2 3 28 28 H 1.09000 * 109.47455 * 179.97438 * 6 5 3 29 29 H 1.08998 * 109.47495 * 300.00129 * 6 5 3 30 30 H 1.09003 * 109.47378 * 60.00207 * 6 5 3 31 31 H 1.08995 * 109.47704 * 300.00243 * 7 5 3 32 32 H 1.09000 * 109.47062 * 60.00271 * 7 5 3 33 33 H 1.08998 * 109.47363 * 180.02562 * 7 5 3 34 34 H 0.96996 * 119.99664 * 359.97438 * 8 5 3 35 35 H 1.07999 * 119.81943 * 359.97438 * 12 11 9 36 36 H 1.08002 * 119.78825 * 180.02562 * 13 12 11 37 37 H 1.08000 * 119.98151 * 180.02562 * 14 13 12 38 38 H 0.96991 * 120.00411 * 180.02562 * 19 18 16 39 39 H 1.07999 * 120.20287 * 359.70584 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0070 2.6071 0.6100 7 6 4.0828 1.1756 -1.4362 8 7 4.1129 0.1706 0.7933 9 6 5.4466 0.0382 0.9346 10 8 6.1961 0.8352 0.4049 11 6 5.9984 -1.0761 1.7353 12 6 5.1361 -1.9929 2.3466 13 6 5.6447 -3.0375 3.0975 14 6 7.0052 -3.1877 3.2517 15 6 7.8882 -2.2760 2.6433 16 6 9.2857 -2.4277 2.7992 17 1 9.7017 -3.3989 3.0232 18 6 10.1294 -1.3196 2.6632 19 7 9.6379 -0.1097 2.7415 20 14 11.9575 -1.5678 2.3699 21 1 12.2200 -1.6343 0.9098 22 1 12.7118 -0.4315 2.9572 23 1 12.3938 -2.8350 3.0095 24 6 7.3738 -1.2128 1.8818 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 5.0956 2.6640 0.6109 29 1 3.6004 3.4287 0.0203 30 1 3.6392 2.6778 1.6337 31 1 3.7689 0.2264 -1.8704 32 1 3.6762 1.9971 -2.0260 33 1 5.1713 1.2321 -1.4358 34 1 3.5148 -0.4652 1.2163 35 1 4.0678 -1.8840 2.2324 36 1 4.9708 -3.7401 3.5650 37 1 7.3947 -4.0060 3.8391 38 1 10.2225 0.6584 2.6469 39 1 8.0432 -0.5098 1.4085 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049674271.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:32 Heat of formation + Delta-G solvation = -104.888718 kcal Electronic energy + Delta-G solvation = -23210.237535 eV Core-core repulsion = 19696.700164 eV Total energy + Delta-G solvation = -3513.537371 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.00970 -39.35290 -37.28924 -36.75105 -35.28856 -33.78571 -31.70789 -29.66592 -29.37453 -28.19801 -27.24580 -25.35054 -24.25716 -22.56206 -21.01690 -20.19496 -19.29168 -18.32923 -17.67307 -16.93788 -16.52610 -15.72539 -15.31885 -14.92828 -14.63027 -14.43289 -13.96582 -13.86287 -13.62721 -13.20942 -12.86587 -12.80999 -12.56486 -12.42946 -12.12847 -11.99887 -11.88097 -11.64482 -11.32984 -11.16932 -11.07235 -11.01399 -10.73722 -10.61820 -10.50822 -9.99270 -9.71315 -9.23605 -8.96506 -8.86043 -7.66476 -7.54310 -6.82114 -4.43322 1.91833 2.15978 2.45155 2.79695 3.06990 3.10023 3.14349 3.45158 3.79434 3.90561 4.48367 4.60244 4.85112 4.90395 4.95288 4.99732 5.30011 5.49502 5.58443 5.66766 5.77348 5.85658 5.91012 6.06381 6.07793 6.25883 6.30546 6.37645 6.67953 6.69433 6.96217 6.98951 7.19062 7.35720 7.50521 7.66879 7.72533 7.89385 8.02569 8.15887 8.48160 8.77766 8.80664 8.85688 10.12507 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.024498 B = 0.004066 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.674777 B = 6884.782436 C = 7727.455089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.354 6.354 3 C 0.467 3.533 4 O -0.498 6.498 5 C 0.194 3.806 6 C -0.156 4.156 7 C -0.164 4.164 8 N -0.729 5.729 9 C 0.573 3.427 10 O -0.538 6.538 11 C -0.128 4.128 12 C -0.217 4.217 13 C -0.097 4.097 14 C -0.211 4.211 15 C 0.098 3.902 16 C -0.460 4.460 17 H 0.081 0.919 18 C 0.074 3.926 19 N -0.783 5.783 20 Si 0.910 3.090 21 H -0.266 1.266 22 H -0.277 1.277 23 H -0.262 1.262 24 C -0.090 4.090 25 H 0.063 0.937 26 H 0.103 0.897 27 H 0.063 0.937 28 H 0.099 0.901 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.102 0.898 34 H 0.406 0.594 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.285 0.715 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.100 0.909 -4.793 13.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.270 6.270 3 C 0.309 3.691 4 O -0.384 6.384 5 C 0.106 3.894 6 C -0.213 4.213 7 C -0.221 4.221 8 N -0.386 5.386 9 C 0.364 3.636 10 O -0.416 6.416 11 C -0.132 4.132 12 C -0.237 4.237 13 C -0.115 4.115 14 C -0.231 4.231 15 C 0.096 3.904 16 C -0.489 4.489 17 H 0.099 0.901 18 C -0.145 4.145 19 N -0.407 5.407 20 Si 0.735 3.265 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.186 1.186 24 C -0.110 4.110 25 H 0.081 0.919 26 H 0.122 0.878 27 H 0.082 0.918 28 H 0.117 0.883 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.121 0.879 34 H 0.243 0.757 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.741 2.052 -5.172 12.992 hybrid contribution 0.070 -0.312 0.195 0.374 sum -11.670 1.740 -4.977 12.806 Atomic orbital electron populations 1.23310 0.76190 1.03930 1.02546 1.86541 1.23557 1.33250 1.83625 1.23896 0.91653 0.81589 0.72002 1.90662 1.66491 1.36337 1.44897 1.20151 0.83696 0.90530 0.94973 1.22188 1.04925 0.93406 1.00827 1.22262 1.05426 1.02444 0.92013 1.46038 1.08096 1.30082 1.54381 1.18801 0.80488 0.84959 0.79322 1.90636 1.58438 1.44013 1.48521 1.19415 0.95096 0.96099 1.02546 1.20360 0.96330 0.99456 1.07598 1.20432 0.95068 0.97132 0.98914 1.21105 0.92664 1.03597 1.05730 1.17598 0.93360 0.90596 0.88884 1.19604 0.91051 0.95644 1.42581 0.90064 1.25956 1.01743 0.94557 0.92278 1.69784 1.38405 0.99200 1.33306 0.86271 0.81500 0.79074 0.79690 1.19133 1.20229 1.18592 1.21638 0.91953 0.99516 0.97921 0.91866 0.87841 0.91784 0.88277 0.90871 0.92107 0.91612 0.91411 0.87947 0.75690 0.89180 0.88887 0.88618 0.90424 0.84725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 101.05 1.07 1.36 16 2 O -0.35 -4.31 9.78 -39.26 -0.38 -4.69 16 3 C 0.47 6.51 6.74 36.00 0.24 6.75 16 4 O -0.50 -7.64 15.84 -18.75 -0.30 -7.94 16 5 C 0.19 2.89 1.01 -132.97 -0.13 2.75 16 6 C -0.16 -2.34 7.93 37.15 0.29 -2.04 16 7 C -0.16 -2.28 8.38 37.16 0.31 -1.96 16 8 N -0.73 -12.00 4.99 -49.61 -0.25 -12.25 16 9 C 0.57 11.81 7.19 -12.31 -0.09 11.72 16 10 O -0.54 -12.19 12.54 5.32 0.07 -12.12 16 11 C -0.13 -2.93 5.87 -105.03 -0.62 -3.54 16 12 C -0.22 -4.46 9.55 -38.92 -0.37 -4.84 16 13 C -0.10 -2.03 10.01 -39.73 -0.40 -2.43 16 14 C -0.21 -4.91 9.78 -38.82 -0.38 -5.29 16 15 C 0.10 2.54 5.57 -106.87 -0.60 1.94 16 16 C -0.46 -11.85 9.05 -37.73 -0.34 -12.19 16 17 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 18 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 19 N -0.78 -20.25 10.95 55.55 0.61 -19.64 16 20 Si 0.91 18.45 29.60 -169.99 -5.03 13.42 16 21 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 22 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 23 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 24 C -0.09 -2.33 8.23 -38.44 -0.32 -2.65 16 25 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 26 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.54 8.13 -51.93 -0.42 0.11 16 28 H 0.10 1.69 6.16 -51.93 -0.32 1.37 16 29 H 0.07 0.99 7.87 -51.93 -0.41 0.58 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.10 1.65 6.16 -51.93 -0.32 1.33 16 34 H 0.41 6.10 5.93 -40.82 -0.24 5.85 16 35 H 0.09 1.55 6.38 -52.49 -0.33 1.21 16 36 H 0.09 1.65 8.06 -52.49 -0.42 1.22 16 37 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 38 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 39 H 0.14 3.74 5.74 -52.49 -0.30 3.44 16 LS Contribution 329.42 15.07 4.96 4.96 Total: -1.00 -28.86 329.42 -6.59 -35.45 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -4.86 Total: 11.48 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -1.42 Total: -8.67 kcal Atomic # 7 Polarization: -32.25 SS G_CDS: 0.36 Total: -31.89 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.61 Total: -24.75 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.42 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.86 -6.59 -35.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049674271.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.434 kcal (2) G-P(sol) polarization free energy of solvation -28.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds