Wall clock time and date at job start Tue Mar 31 2020 07:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34232 * 117.00428 * 2 1 4 4 O 1.20823 * 119.99656 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00344 * 179.97438 * 3 2 1 6 6 C 1.52993 * 109.47396 * 204.99870 * 5 3 2 7 7 C 1.52996 * 109.47053 * 84.99604 * 5 3 2 8 8 N 1.46507 * 109.47115 * 325.00153 * 5 3 2 9 9 C 1.34771 * 119.99873 * 179.97438 * 8 5 3 10 10 O 1.21551 * 120.00219 * 0.02562 * 9 8 5 11 11 C 1.47892 * 120.00019 * 179.97438 * 9 8 5 12 12 C 1.39921 * 120.02340 * 359.97438 * 11 9 8 13 13 C 1.38327 * 120.35760 * 180.02562 * 12 11 9 14 14 C 1.37745 * 120.41334 * 359.97438 * 13 12 11 15 15 C 1.40744 * 120.03985 * 359.97438 * 14 13 12 16 16 C 1.41440 * 120.17902 * 180.02562 * 15 14 13 17 17 H 1.07995 * 119.99720 * 24.39575 * 16 15 14 18 18 C 1.39937 * 120.00148 * 204.39015 * 16 15 14 19 19 N 1.30828 * 120.00202 * 17.85017 * 18 16 15 20 20 Si 1.86804 * 120.00094 * 197.84477 * 18 16 15 21 21 H 1.48498 * 109.46884 * 90.00045 * 20 18 16 22 22 H 1.48493 * 109.47017 * 210.00108 * 20 18 16 23 23 H 1.48500 * 109.46917 * 330.00618 * 20 18 16 24 24 C 1.38995 * 120.02504 * 180.02562 * 11 9 8 25 25 H 1.09004 * 109.46645 * 59.99985 * 1 2 3 26 26 H 1.08993 * 109.47663 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47472 * 300.00612 * 1 2 3 28 28 H 1.09000 * 109.47455 * 179.97438 * 6 5 3 29 29 H 1.08998 * 109.47495 * 300.00129 * 6 5 3 30 30 H 1.09003 * 109.47378 * 60.00207 * 6 5 3 31 31 H 1.08995 * 109.47704 * 300.00243 * 7 5 3 32 32 H 1.09000 * 109.47062 * 60.00271 * 7 5 3 33 33 H 1.08998 * 109.47363 * 180.02562 * 7 5 3 34 34 H 0.96996 * 119.99664 * 359.97438 * 8 5 3 35 35 H 1.07999 * 119.81943 * 359.97438 * 12 11 9 36 36 H 1.08002 * 119.78825 * 180.02562 * 13 12 11 37 37 H 1.08000 * 119.98151 * 180.02562 * 14 13 12 38 38 H 0.96991 * 120.00411 * 180.02562 * 19 18 16 39 39 H 1.07999 * 120.20287 * 359.70584 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0070 2.6071 0.6100 7 6 4.0828 1.1756 -1.4362 8 7 4.1129 0.1706 0.7933 9 6 5.4466 0.0382 0.9346 10 8 6.1961 0.8352 0.4049 11 6 5.9984 -1.0761 1.7353 12 6 5.1361 -1.9929 2.3466 13 6 5.6447 -3.0375 3.0975 14 6 7.0052 -3.1877 3.2517 15 6 7.8882 -2.2760 2.6433 16 6 9.2857 -2.4277 2.7992 17 1 9.7017 -3.3989 3.0232 18 6 10.1294 -1.3196 2.6632 19 7 9.6379 -0.1097 2.7415 20 14 11.9575 -1.5678 2.3699 21 1 12.2200 -1.6343 0.9098 22 1 12.7118 -0.4315 2.9572 23 1 12.3938 -2.8350 3.0095 24 6 7.3738 -1.2128 1.8818 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 5.0956 2.6640 0.6109 29 1 3.6004 3.4287 0.0203 30 1 3.6392 2.6778 1.6337 31 1 3.7689 0.2264 -1.8704 32 1 3.6762 1.9971 -2.0260 33 1 5.1713 1.2321 -1.4358 34 1 3.5148 -0.4652 1.2163 35 1 4.0678 -1.8840 2.2324 36 1 4.9708 -3.7401 3.5650 37 1 7.3947 -4.0060 3.8391 38 1 10.2225 0.6584 2.6469 39 1 8.0432 -0.5098 1.4085 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049674271.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:31 Heat of formation + Delta-G solvation = -121.709021 kcal Electronic energy + Delta-G solvation = -23210.966918 eV Core-core repulsion = 19696.700164 eV Total energy + Delta-G solvation = -3514.266754 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.16205 -40.83505 -38.96303 -37.82587 -36.70785 -35.59720 -33.24003 -31.40315 -31.09614 -29.00514 -28.39152 -27.19045 -25.49223 -24.08263 -22.79638 -21.50236 -20.77645 -19.77280 -19.11935 -18.20601 -17.60948 -17.23954 -16.91833 -16.48054 -16.13131 -15.92196 -15.46929 -15.09132 -14.81444 -14.75440 -14.49051 -14.25090 -13.96870 -13.53743 -13.44874 -13.29706 -13.05338 -12.97938 -12.89414 -12.78486 -12.54290 -12.41641 -12.15940 -11.88579 -11.86182 -11.68076 -11.47662 -11.05687 -10.59747 -10.30905 -9.46485 -9.36026 -8.64389 -6.35559 0.39255 0.81987 1.03556 1.38831 1.46157 1.50045 1.52515 2.05451 2.10740 2.21234 2.80278 3.42025 3.68706 3.74059 3.83488 4.00219 4.28173 4.33546 4.44296 4.52110 4.57275 4.60645 4.66180 4.68064 4.72457 4.92734 5.01960 5.11421 5.15326 5.18063 5.23540 5.31345 5.35167 5.54641 5.88181 5.95351 6.08068 6.30905 6.43600 6.50469 6.66775 6.90717 6.96777 7.26572 8.32197 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.024498 B = 0.004066 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.674777 B = 6884.782436 C = 7727.455089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.356 6.356 3 C 0.477 3.523 4 O -0.512 6.512 5 C 0.189 3.811 6 C -0.152 4.152 7 C -0.160 4.160 8 N -0.709 5.709 9 C 0.573 3.427 10 O -0.565 6.565 11 C -0.138 4.138 12 C -0.199 4.199 13 C -0.096 4.096 14 C -0.218 4.218 15 C 0.067 3.933 16 C -0.498 4.498 17 H 0.082 0.918 18 C 0.032 3.968 19 N -0.823 5.823 20 Si 0.981 3.019 21 H -0.266 1.266 22 H -0.270 1.270 23 H -0.252 1.252 24 C -0.126 4.126 25 H 0.067 0.933 26 H 0.135 0.865 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.415 0.585 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.107 0.893 38 H 0.287 0.713 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.518 -0.169 -4.890 15.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.271 6.271 3 C 0.319 3.681 4 O -0.400 6.400 5 C 0.101 3.899 6 C -0.210 4.210 7 C -0.218 4.218 8 N -0.366 5.366 9 C 0.363 3.637 10 O -0.445 6.445 11 C -0.141 4.141 12 C -0.218 4.218 13 C -0.113 4.113 14 C -0.238 4.238 15 C 0.065 3.935 16 C -0.527 4.527 17 H 0.100 0.900 18 C -0.183 4.183 19 N -0.448 5.448 20 Si 0.802 3.198 21 H -0.191 1.191 22 H -0.195 1.195 23 H -0.176 1.176 24 C -0.147 4.147 25 H 0.086 0.914 26 H 0.153 0.847 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.107 0.893 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.254 0.746 35 H 0.151 0.849 36 H 0.155 0.845 37 H 0.125 0.875 38 H 0.097 0.903 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -14.212 0.946 -5.262 15.184 hybrid contribution 0.545 -0.028 0.223 0.590 sum -13.666 0.918 -5.039 14.594 Atomic orbital electron populations 1.23676 0.73883 1.06175 1.02961 1.86514 1.25705 1.31899 1.83031 1.23417 0.90830 0.82003 0.71803 1.90666 1.66557 1.36963 1.45775 1.20253 0.84958 0.89542 0.95111 1.22113 1.03328 0.94328 1.01235 1.22207 1.03806 1.03938 0.91814 1.45789 1.06593 1.30447 1.53770 1.18554 0.81696 0.84285 0.79134 1.90636 1.59558 1.44763 1.49499 1.19727 0.94505 0.97194 1.02664 1.20851 0.98164 0.97747 1.05075 1.20901 0.94622 0.97642 0.98177 1.21401 0.93836 1.03190 1.05329 1.17936 0.94212 0.91606 0.89743 1.19866 0.91906 0.96150 1.44804 0.89951 1.26795 1.06176 0.93910 0.91408 1.69875 1.39998 1.00020 1.34929 0.85216 0.75842 0.79369 0.79405 1.19057 1.19488 1.17584 1.21449 0.93167 1.00186 0.99895 0.91379 0.84736 0.91533 0.90734 0.89253 0.92145 0.90619 0.89268 0.90467 0.74578 0.84892 0.84525 0.87512 0.90274 0.87900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.36 -7.45 9.78 -51.44 -0.50 -7.95 16 3 C 0.48 12.06 6.74 71.24 0.48 12.54 16 4 O -0.51 -14.45 15.84 21.97 0.35 -14.11 16 5 C 0.19 5.31 1.01 2.85 0.00 5.32 16 6 C -0.15 -4.48 7.93 71.98 0.57 -3.91 16 7 C -0.16 -4.26 8.38 71.98 0.60 -3.66 16 8 N -0.71 -22.21 4.99 -429.14 -2.14 -24.35 16 9 C 0.57 23.67 7.19 86.80 0.62 24.30 16 10 O -0.56 -26.54 12.54 -3.88 -0.05 -26.59 16 11 C -0.14 -6.28 5.87 -20.13 -0.12 -6.40 16 12 C -0.20 -7.61 9.55 22.70 0.22 -7.40 16 13 C -0.10 -3.70 10.01 22.17 0.22 -3.48 16 14 C -0.22 -10.00 9.78 22.77 0.22 -9.78 16 15 C 0.07 3.59 5.57 -21.32 -0.12 3.47 16 16 C -0.50 -26.73 9.05 23.47 0.21 -26.52 16 17 H 0.08 4.19 7.91 -2.91 -0.02 4.17 16 18 C 0.03 1.66 5.14 85.25 0.44 2.10 16 19 N -0.82 -44.94 10.95 21.82 0.24 -44.70 16 20 Si 0.98 39.07 29.60 68.60 2.03 41.10 16 21 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 22 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 23 H -0.25 -9.53 7.11 99.48 0.71 -8.83 16 24 C -0.13 -6.81 8.23 23.01 0.19 -6.62 16 25 H 0.07 0.89 8.13 -2.38 -0.02 0.87 16 26 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.07 0.90 8.13 -2.39 -0.02 0.88 16 28 H 0.07 2.60 6.16 -2.39 -0.01 2.58 16 29 H 0.09 2.31 7.87 -2.39 -0.02 2.29 16 30 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.08 2.50 6.16 -2.39 -0.01 2.49 16 34 H 0.42 11.16 5.93 -92.71 -0.55 10.62 16 35 H 0.13 3.91 6.38 -2.91 -0.02 3.89 16 36 H 0.14 4.13 8.06 -2.91 -0.02 4.10 16 37 H 0.11 4.55 8.06 -2.91 -0.02 4.52 16 38 H 0.29 14.43 8.30 -92.71 -0.77 13.66 16 39 H 0.10 6.14 5.74 -2.91 -0.02 6.12 16 Total: -1.00 -65.78 329.42 5.20 -60.58 By element: Atomic # 1 Polarization: 33.97 SS G_CDS: 0.53 Total: 34.50 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: 4.74 Total: -18.49 kcal Atomic # 7 Polarization: -67.15 SS G_CDS: -1.90 Total: -69.05 kcal Atomic # 8 Polarization: -48.44 SS G_CDS: -0.20 Total: -48.65 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Total: -65.78 5.20 -60.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049674271.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.126 kcal (2) G-P(sol) polarization free energy of solvation -65.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds