Wall clock time and date at job start Tue Mar 31 2020 06:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47096 * 2 1 4 4 C 1.52996 * 109.47522 * 120.00278 * 2 1 3 5 5 H 1.08999 * 109.46740 * 300.00054 * 4 2 1 6 6 N 1.46496 * 109.47566 * 179.97438 * 4 2 1 7 7 C 1.34777 * 120.00012 * 154.99415 * 6 4 2 8 8 O 1.21585 * 120.00106 * 359.73548 * 7 6 4 9 9 C 1.47644 * 119.99610 * 179.97438 * 7 6 4 10 10 C 1.40010 * 119.89790 * 359.73363 * 9 7 6 11 11 C 1.36318 * 120.10815 * 179.75614 * 10 9 7 12 12 C 1.40894 * 119.88685 * 0.51836 * 11 10 9 13 13 C 1.41113 * 120.10011 * 179.72029 * 12 11 10 14 14 H 1.07998 * 119.99637 * 204.65112 * 13 12 11 15 15 C 1.40227 * 120.00004 * 24.64814 * 13 12 11 16 16 N 1.30644 * 120.00336 * 17.87276 * 15 13 12 17 17 Si 1.86799 * 119.99649 * 197.87207 * 15 13 12 18 18 H 1.48505 * 109.47275 * 90.00350 * 17 15 13 19 19 H 1.48504 * 109.47156 * 209.99808 * 17 15 13 20 20 H 1.48499 * 109.47237 * 330.00004 * 17 15 13 21 21 C 1.40883 * 119.79439 * 359.72960 * 12 11 10 22 22 C 1.36315 * 119.89368 * 0.02562 * 21 12 11 23 23 C 1.50703 * 109.47012 * 59.99552 * 4 2 1 24 24 O 1.20829 * 119.99822 * 120.00253 * 23 4 2 25 25 O 1.34225 * 120.00194 * 300.00655 * 23 4 2 26 26 H 1.08999 * 109.47158 * 299.99923 * 1 2 3 27 27 H 1.09006 * 109.47419 * 59.99745 * 1 2 3 28 28 H 1.09001 * 109.47401 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46780 * 240.00416 * 2 1 3 30 30 H 1.08999 * 109.46989 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.47195 * 300.00392 * 3 2 1 32 32 H 1.08999 * 109.47054 * 60.00014 * 3 2 1 33 33 H 0.97000 * 119.99474 * 335.00864 * 6 4 2 34 34 H 1.08005 * 119.94883 * 0.02562 * 10 9 7 35 35 H 1.07999 * 120.05613 * 180.24704 * 11 10 9 36 36 H 0.96995 * 120.00352 * 180.02562 * 16 15 13 37 37 H 1.08002 * 120.05337 * 179.97438 * 21 12 11 38 38 H 1.08004 * 119.94742 * 179.97438 * 22 21 12 39 39 H 0.96700 * 116.99578 * 179.97438 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.6767 -0.2075 2.1391 6 7 3.5050 -0.7218 1.2488 7 6 4.1791 -0.8236 2.4115 8 8 3.5714 -0.9100 3.4610 9 6 5.6556 -0.8247 2.4110 10 6 6.3531 -0.7255 1.2012 11 6 7.7163 -0.7211 1.1962 12 6 8.4232 -0.8276 2.4103 13 6 9.8343 -0.8294 2.4098 14 1 10.3739 -1.2924 3.2228 15 6 10.5359 -0.2303 1.3538 16 7 9.9309 0.6180 0.5657 17 14 12.3356 -0.6450 1.0741 18 1 12.4388 -1.8067 0.1547 19 1 13.0255 0.5246 0.4729 20 1 12.9733 -0.9827 2.3719 21 6 7.7168 -0.9324 3.6247 22 6 6.3536 -0.9308 3.6201 23 6 1.5377 -2.1421 1.2491 24 8 2.3228 -3.0605 1.2491 25 8 0.2180 -2.3874 1.2491 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.9898 -0.6487 0.4119 34 1 5.8104 -0.6480 0.2706 35 1 8.2535 -0.6406 0.2627 36 1 10.4160 1.0322 -0.1650 37 1 8.2544 -1.0146 4.5578 38 1 5.8112 -1.0115 4.5505 39 1 -0.0561 -3.3147 1.2487 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058241197.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:27 Heat of formation + Delta-G solvation = -123.456389 kcal Electronic energy + Delta-G solvation = -22936.596135 eV Core-core repulsion = 19422.253610 eV Total energy + Delta-G solvation = -3514.342526 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.62072 -38.93567 -37.27201 -36.31405 -36.05317 -33.88660 -32.93621 -30.26094 -29.45259 -27.93051 -27.09360 -25.58259 -22.61228 -21.67609 -21.02885 -20.37686 -19.59733 -18.11830 -17.54179 -17.17952 -16.63660 -15.97723 -15.50951 -15.38396 -14.23896 -14.07377 -13.97734 -13.83982 -13.55605 -13.22701 -12.90479 -12.79326 -12.59757 -12.26079 -12.08698 -11.94462 -11.73052 -11.40729 -11.31824 -11.26227 -10.98594 -10.88809 -10.88535 -10.67701 -10.48520 -10.05351 -9.56884 -9.36591 -9.08817 -8.85988 -7.72779 -7.55718 -7.04743 -4.61313 2.18241 2.29531 2.84811 2.94097 2.97852 2.98518 3.04020 3.64304 3.73536 3.89702 4.44518 4.57020 4.74025 4.99516 5.21119 5.33021 5.42914 5.55065 5.57245 5.74184 5.78236 5.93201 6.02149 6.05316 6.15768 6.25455 6.31053 6.51725 6.70264 6.76919 6.81804 7.02231 7.12266 7.42577 7.62036 7.76414 7.85327 7.96229 8.05800 8.12672 8.39024 8.62236 8.74426 8.97413 9.87252 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.026800 B = 0.003537 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.510680 B = 7914.350545 C = 8333.537618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.096 4.096 3 C -0.146 4.146 4 C 0.165 3.835 5 H 0.123 0.877 6 N -0.720 5.720 7 C 0.580 3.420 8 O -0.572 6.572 9 C -0.282 4.282 10 C -0.060 4.060 11 C -0.178 4.178 12 C 0.129 3.871 13 C -0.442 4.442 14 H 0.085 0.915 15 C 0.075 3.925 16 N -0.771 5.771 17 Si 0.914 3.086 18 H -0.264 1.264 19 H -0.275 1.275 20 H -0.259 1.259 21 C -0.238 4.238 22 C -0.020 4.020 23 C 0.462 3.538 24 O -0.499 6.499 25 O -0.514 6.514 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.404 0.596 34 H 0.088 0.912 35 H 0.121 0.879 36 H 0.287 0.713 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.487 0.637 -5.621 13.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.116 4.116 3 C -0.204 4.204 4 C 0.056 3.944 5 H 0.140 0.860 6 N -0.374 5.374 7 C 0.376 3.624 8 O -0.454 6.454 9 C -0.287 4.287 10 C -0.079 4.079 11 C -0.197 4.197 12 C 0.126 3.874 13 C -0.469 4.469 14 H 0.103 0.897 15 C -0.147 4.147 16 N -0.394 5.394 17 Si 0.738 3.262 18 H -0.189 1.189 19 H -0.200 1.200 20 H -0.183 1.183 21 C -0.258 4.258 22 C -0.040 4.040 23 C 0.301 3.699 24 O -0.385 6.385 25 O -0.326 6.326 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.240 0.760 34 H 0.106 0.894 35 H 0.138 0.862 36 H 0.098 0.902 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -12.507 0.905 -5.072 13.526 hybrid contribution 0.870 -0.778 -0.620 1.322 sum -11.637 0.127 -5.691 12.955 Atomic orbital electron populations 1.22033 0.93197 1.03951 1.02105 1.21307 0.97416 0.97139 0.95697 1.21835 1.02049 0.94203 1.02279 1.20438 0.83168 0.88490 1.02254 0.85969 1.45707 1.03625 1.77294 1.10737 1.18634 0.88415 0.73317 0.82040 1.90632 1.70674 1.52434 1.31627 1.18793 0.89338 1.25578 0.94958 1.20454 0.94882 0.98044 0.94566 1.20971 0.92357 1.07708 0.98666 1.17793 0.93289 0.85373 0.90938 1.19874 0.91699 1.30064 1.05305 0.89659 1.26099 1.01644 0.92599 0.94331 1.69738 1.39147 1.17486 1.13038 0.86201 0.80858 0.79181 0.79994 1.18919 1.20004 1.18265 1.20712 0.93146 1.14836 0.97103 1.20356 0.93868 0.94060 0.95668 1.24388 0.79898 0.93726 0.71845 1.90744 1.56805 1.46660 1.44257 1.84640 1.26534 1.35604 1.85789 0.92136 0.92244 0.90151 0.90334 0.91701 0.92010 0.92088 0.75968 0.89370 0.86154 0.90217 0.88334 0.88098 0.74070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 8.67 37.16 0.32 -1.01 16 2 C -0.10 -0.99 2.54 -90.62 -0.23 -1.22 16 3 C -0.15 -1.44 9.04 37.16 0.34 -1.11 16 4 C 0.16 2.32 2.09 -69.08 -0.14 2.18 16 5 H 0.12 1.81 7.57 -51.93 -0.39 1.42 16 6 N -0.72 -12.20 3.86 -55.94 -0.22 -12.41 16 7 C 0.58 12.54 7.59 -12.42 -0.09 12.44 16 8 O -0.57 -13.74 15.98 5.29 0.08 -13.65 16 9 C -0.28 -6.56 5.89 -104.73 -0.62 -7.18 16 10 C -0.06 -1.35 9.47 -39.61 -0.38 -1.72 16 11 C -0.18 -4.37 8.64 -39.27 -0.34 -4.71 16 12 C 0.13 3.31 5.58 -106.80 -0.60 2.71 16 13 C -0.44 -11.01 9.04 -37.75 -0.34 -11.35 16 14 H 0.09 2.03 7.91 -52.49 -0.42 1.62 16 15 C 0.07 1.73 5.14 -17.31 -0.09 1.65 16 16 N -0.77 -18.34 10.95 55.56 0.61 -17.73 16 17 Si 0.91 17.25 29.60 -169.99 -5.03 12.22 16 18 H -0.26 -4.96 7.11 56.52 0.40 -4.55 16 19 H -0.28 -5.06 7.11 56.52 0.40 -4.66 16 20 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 21 C -0.24 -5.83 9.73 -39.27 -0.38 -6.21 16 22 C -0.02 -0.49 9.52 -39.61 -0.38 -0.86 16 23 C 0.46 6.84 7.59 36.01 0.27 7.11 16 24 O -0.50 -9.48 17.08 -18.75 -0.32 -9.80 16 25 O -0.51 -5.37 10.34 -39.24 -0.41 -5.77 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.70 5.33 -51.93 -0.28 0.43 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.72 7.45 -51.93 -0.39 0.33 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.40 6.17 6.39 -40.82 -0.26 5.91 16 34 H 0.09 1.67 6.37 -52.48 -0.33 1.33 16 35 H 0.12 2.98 6.16 -52.49 -0.32 2.66 16 36 H 0.29 6.12 8.29 -40.82 -0.34 5.78 16 37 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 38 H 0.10 2.34 7.63 -52.48 -0.40 1.94 16 39 H 0.40 2.63 9.10 45.56 0.41 3.05 16 LS Contribution 330.64 15.07 4.98 4.98 Total: -1.00 -31.13 330.64 -7.00 -38.13 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -4.05 Total: 13.31 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: -2.65 Total: -9.28 kcal Atomic # 7 Polarization: -30.54 SS G_CDS: 0.39 Total: -30.14 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -0.64 Total: -29.22 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -5.03 Total: 12.22 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.13 -7.00 -38.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058241197.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.324 kcal (2) G-P(sol) polarization free energy of solvation -31.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds