Wall clock time and date at job start Tue Mar 31 2020 06:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47096 * 2 1 4 4 C 1.52996 * 109.47522 * 120.00278 * 2 1 3 5 5 H 1.08999 * 109.46740 * 300.00054 * 4 2 1 6 6 N 1.46496 * 109.47566 * 179.97438 * 4 2 1 7 7 C 1.34777 * 120.00012 * 154.99415 * 6 4 2 8 8 O 1.21585 * 120.00106 * 359.73548 * 7 6 4 9 9 C 1.47644 * 119.99610 * 179.97438 * 7 6 4 10 10 C 1.40010 * 119.89790 * 359.73363 * 9 7 6 11 11 C 1.36318 * 120.10815 * 179.75614 * 10 9 7 12 12 C 1.40894 * 119.88685 * 0.51836 * 11 10 9 13 13 C 1.41113 * 120.10011 * 179.72029 * 12 11 10 14 14 H 1.07998 * 119.99637 * 204.65112 * 13 12 11 15 15 C 1.40227 * 120.00004 * 24.64814 * 13 12 11 16 16 N 1.30644 * 120.00336 * 17.87276 * 15 13 12 17 17 Si 1.86799 * 119.99649 * 197.87207 * 15 13 12 18 18 H 1.48505 * 109.47275 * 90.00350 * 17 15 13 19 19 H 1.48504 * 109.47156 * 209.99808 * 17 15 13 20 20 H 1.48499 * 109.47237 * 330.00004 * 17 15 13 21 21 C 1.40883 * 119.79439 * 359.72960 * 12 11 10 22 22 C 1.36315 * 119.89368 * 0.02562 * 21 12 11 23 23 C 1.50703 * 109.47012 * 59.99552 * 4 2 1 24 24 O 1.20829 * 119.99822 * 120.00253 * 23 4 2 25 25 O 1.34225 * 120.00194 * 300.00655 * 23 4 2 26 26 H 1.08999 * 109.47158 * 299.99923 * 1 2 3 27 27 H 1.09006 * 109.47419 * 59.99745 * 1 2 3 28 28 H 1.09001 * 109.47401 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46780 * 240.00416 * 2 1 3 30 30 H 1.08999 * 109.46989 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.47195 * 300.00392 * 3 2 1 32 32 H 1.08999 * 109.47054 * 60.00014 * 3 2 1 33 33 H 0.97000 * 119.99474 * 335.00864 * 6 4 2 34 34 H 1.08005 * 119.94883 * 0.02562 * 10 9 7 35 35 H 1.07999 * 120.05613 * 180.24704 * 11 10 9 36 36 H 0.96995 * 120.00352 * 180.02562 * 16 15 13 37 37 H 1.08002 * 120.05337 * 179.97438 * 21 12 11 38 38 H 1.08004 * 119.94742 * 179.97438 * 22 21 12 39 39 H 0.96700 * 116.99578 * 179.97438 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.6767 -0.2075 2.1391 6 7 3.5050 -0.7218 1.2488 7 6 4.1791 -0.8236 2.4115 8 8 3.5714 -0.9100 3.4610 9 6 5.6556 -0.8247 2.4110 10 6 6.3531 -0.7255 1.2012 11 6 7.7163 -0.7211 1.1962 12 6 8.4232 -0.8276 2.4103 13 6 9.8343 -0.8294 2.4098 14 1 10.3739 -1.2924 3.2228 15 6 10.5359 -0.2303 1.3538 16 7 9.9309 0.6180 0.5657 17 14 12.3356 -0.6450 1.0741 18 1 12.4388 -1.8067 0.1547 19 1 13.0255 0.5246 0.4729 20 1 12.9733 -0.9827 2.3719 21 6 7.7168 -0.9324 3.6247 22 6 6.3536 -0.9308 3.6201 23 6 1.5377 -2.1421 1.2491 24 8 2.3228 -3.0605 1.2491 25 8 0.2180 -2.3874 1.2491 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.9898 -0.6487 0.4119 34 1 5.8104 -0.6480 0.2706 35 1 8.2535 -0.6406 0.2627 36 1 10.4160 1.0322 -0.1650 37 1 8.2544 -1.0146 4.5578 38 1 5.8112 -1.0115 4.5505 39 1 -0.0561 -3.3147 1.2487 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058241197.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:26 Heat of formation + Delta-G solvation = -143.017182 kcal Electronic energy + Delta-G solvation = -22937.444355 eV Core-core repulsion = 19422.253610 eV Total energy + Delta-G solvation = -3515.190746 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.85623 -40.50553 -38.97269 -37.50938 -37.18956 -35.68891 -34.28233 -32.01005 -31.31665 -29.13718 -28.05588 -27.17481 -24.07468 -23.03919 -22.79567 -21.53859 -21.13352 -19.38090 -19.23468 -18.60923 -17.88128 -17.46826 -16.99573 -16.67498 -15.76481 -15.71736 -15.50227 -15.11461 -14.84676 -14.62443 -14.49973 -13.99883 -13.71678 -13.68256 -13.64166 -13.24278 -12.93759 -12.87179 -12.74205 -12.64266 -12.39622 -12.21321 -11.78943 -11.75881 -11.73165 -11.66402 -11.38481 -11.13529 -10.82519 -10.32690 -9.59394 -9.43885 -8.80403 -6.49657 0.39853 1.12748 1.13980 1.38403 1.42642 1.53467 1.74596 2.13500 2.17405 2.40765 2.79152 3.49285 3.67889 3.85870 4.09442 4.19194 4.29251 4.34593 4.40709 4.42520 4.61032 4.87695 4.90715 4.99217 5.01946 5.09502 5.13367 5.19784 5.28202 5.32868 5.41385 5.53737 5.57068 5.58535 5.79378 5.91342 5.97934 6.20930 6.51869 6.56063 6.75685 6.87191 6.94173 7.31920 8.14949 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.026800 B = 0.003537 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.510680 B = 7914.350545 C = 8333.537618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.087 4.087 3 C -0.146 4.146 4 C 0.158 3.842 5 H 0.116 0.884 6 N -0.706 5.706 7 C 0.580 3.420 8 O -0.601 6.601 9 C -0.295 4.295 10 C -0.052 4.052 11 C -0.197 4.197 12 C 0.102 3.898 13 C -0.472 4.472 14 H 0.085 0.915 15 C 0.039 3.961 16 N -0.795 5.795 17 Si 0.988 3.012 18 H -0.260 1.260 19 H -0.263 1.263 20 H -0.258 1.258 21 C -0.253 4.253 22 C -0.032 4.032 23 C 0.469 3.531 24 O -0.547 6.547 25 O -0.494 6.494 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.049 0.951 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.412 0.588 34 H 0.122 0.878 35 H 0.115 0.885 36 H 0.298 0.702 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.265 1.007 -7.387 15.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.106 4.106 3 C -0.203 4.203 4 C 0.050 3.950 5 H 0.134 0.866 6 N -0.358 5.358 7 C 0.375 3.625 8 O -0.486 6.486 9 C -0.299 4.299 10 C -0.071 4.071 11 C -0.217 4.217 12 C 0.099 3.901 13 C -0.499 4.499 14 H 0.103 0.897 15 C -0.180 4.180 16 N -0.418 5.418 17 Si 0.808 3.192 18 H -0.184 1.184 19 H -0.187 1.187 20 H -0.182 1.182 21 C -0.272 4.272 22 C -0.051 4.051 23 C 0.311 3.689 24 O -0.437 6.437 25 O -0.307 6.307 26 H 0.079 0.921 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.068 0.932 31 H 0.103 0.897 32 H 0.076 0.924 33 H 0.250 0.750 34 H 0.140 0.860 35 H 0.133 0.867 36 H 0.109 0.891 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -13.353 1.285 -6.870 15.072 hybrid contribution 0.943 -0.871 -0.080 1.286 sum -12.411 0.414 -6.950 14.230 Atomic orbital electron populations 1.22019 0.91453 1.04207 1.03198 1.21340 0.98657 0.96828 0.93784 1.21849 1.01105 0.94081 1.03301 1.20771 0.81143 0.88873 1.04172 0.86610 1.45495 1.05206 1.75536 1.09580 1.18424 0.87902 0.73298 0.82908 1.90607 1.71022 1.53969 1.32959 1.19103 0.90752 1.25114 0.94980 1.20705 0.94337 0.96301 0.95716 1.21012 0.93251 1.09230 0.98161 1.18141 0.94170 0.86150 0.91619 1.20140 0.91871 1.31266 1.06669 0.89662 1.26919 1.05977 0.91780 0.93373 1.69750 1.41157 1.17593 1.13335 0.85100 0.75071 0.79214 0.79823 1.18407 1.18748 1.18172 1.20850 0.93504 1.15544 0.97330 1.20505 0.93914 0.94375 0.96355 1.24368 0.80698 0.93268 0.70585 1.90739 1.58224 1.47946 1.46811 1.84587 1.23929 1.37528 1.84662 0.92072 0.90178 0.90250 0.89341 0.93180 0.89720 0.92390 0.74965 0.85981 0.86676 0.89076 0.87725 0.88003 0.71660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 8.67 71.98 0.62 -1.47 16 2 C -0.09 -1.56 2.54 -10.79 -0.03 -1.59 16 3 C -0.15 -2.54 9.04 71.98 0.65 -1.89 16 4 C 0.16 4.23 2.09 44.25 0.09 4.32 16 5 H 0.12 3.32 7.57 -2.39 -0.02 3.30 16 6 N -0.71 -23.35 3.86 -449.17 -1.74 -25.09 16 7 C 0.58 25.16 7.59 86.73 0.66 25.82 16 8 O -0.60 -29.22 15.98 -3.99 -0.06 -29.29 16 9 C -0.30 -13.89 5.89 -19.93 -0.12 -14.01 16 10 C -0.05 -2.31 9.47 22.25 0.21 -2.10 16 11 C -0.20 -9.86 8.64 22.47 0.19 -9.67 16 12 C 0.10 5.39 5.58 -21.28 -0.12 5.27 16 13 C -0.47 -24.01 9.04 23.46 0.21 -23.80 16 14 H 0.09 4.17 7.91 -2.91 -0.02 4.15 16 15 C 0.04 1.80 5.14 85.35 0.44 2.24 16 16 N -0.80 -37.74 10.95 21.87 0.24 -37.50 16 17 Si 0.99 34.76 29.60 68.60 2.03 36.79 16 18 H -0.26 -8.89 7.11 99.48 0.71 -8.19 16 19 H -0.26 -8.70 7.11 99.48 0.71 -7.99 16 20 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 21 C -0.25 -12.79 9.73 22.47 0.22 -12.58 16 22 C -0.03 -1.60 9.52 22.25 0.21 -1.38 16 23 C 0.47 13.23 7.59 71.24 0.54 13.77 16 24 O -0.55 -20.50 17.08 21.96 0.37 -20.12 16 25 O -0.49 -9.14 10.34 -51.37 -0.53 -9.67 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 28 H 0.08 1.13 5.33 -2.39 -0.01 1.11 16 29 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.05 1.02 7.45 -2.39 -0.02 1.00 16 31 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.41 12.05 6.39 -92.71 -0.59 11.46 16 34 H 0.12 4.48 6.37 -2.91 -0.02 4.46 16 35 H 0.12 5.79 6.16 -2.91 -0.02 5.78 16 36 H 0.30 12.50 8.29 -92.71 -0.77 11.73 16 37 H 0.10 4.97 8.06 -2.91 -0.02 4.94 16 38 H 0.10 4.90 7.63 -2.91 -0.02 4.88 16 39 H 0.42 4.44 9.10 -74.06 -0.67 3.77 16 Total: -1.00 -68.54 330.64 3.94 -64.60 By element: Atomic # 1 Polarization: 37.50 SS G_CDS: -0.17 Total: 37.33 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: 3.79 Total: -17.06 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: -1.50 Total: -62.59 kcal Atomic # 8 Polarization: -58.86 SS G_CDS: -0.22 Total: -59.08 kcal Atomic # 14 Polarization: 34.76 SS G_CDS: 2.03 Total: 36.79 kcal Total: -68.54 3.94 -64.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058241197.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.417 kcal (2) G-P(sol) polarization free energy of solvation -68.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds