Wall clock time and date at job start Tue Mar 31 2020 06:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47239 * 2 1 4 4 C 1.53005 * 109.47014 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47478 * 55.00145 * 4 3 2 6 6 N 1.46501 * 109.46864 * 294.99754 * 4 3 2 7 7 C 1.34780 * 119.99458 * 154.99997 * 6 4 3 8 8 O 1.21587 * 120.00381 * 0.02562 * 7 6 4 9 9 C 1.47647 * 119.99696 * 180.02562 * 7 6 4 10 10 C 1.40009 * 119.89383 * 359.72320 * 9 7 6 11 11 C 1.36318 * 120.10632 * 179.76167 * 10 9 7 12 12 C 1.40886 * 119.89132 * 0.51274 * 11 10 9 13 13 C 1.41104 * 120.10709 * 179.71896 * 12 11 10 14 14 H 1.07999 * 120.00276 * 204.65685 * 13 12 11 15 15 C 1.40224 * 119.99969 * 24.65698 * 13 12 11 16 16 N 1.30648 * 119.99765 * 17.86172 * 15 13 12 17 17 Si 1.86797 * 120.00205 * 197.86440 * 15 13 12 18 18 H 1.48509 * 109.47095 * 59.99626 * 17 15 13 19 19 H 1.48500 * 109.47584 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47423 * 300.00096 * 17 15 13 21 21 C 1.40894 * 119.79267 * 359.74673 * 12 11 10 22 22 C 1.36318 * 119.89201 * 359.97438 * 21 12 11 23 23 C 1.50702 * 109.46792 * 175.00263 * 4 3 2 24 24 O 1.20826 * 119.99974 * 120.00369 * 23 4 3 25 25 O 1.34227 * 119.99884 * 299.99140 * 23 4 3 26 26 H 1.09004 * 109.46587 * 299.99932 * 1 2 3 27 27 H 1.08997 * 109.47024 * 59.99706 * 1 2 3 28 28 H 1.08995 * 109.46769 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47069 * 239.99877 * 2 1 3 30 30 H 1.09004 * 109.47321 * 120.00146 * 2 1 3 31 31 H 1.08992 * 109.47143 * 60.00079 * 3 2 1 32 32 H 1.08997 * 109.47353 * 300.00093 * 3 2 1 33 33 H 0.96997 * 120.00032 * 335.00489 * 6 4 3 34 34 H 1.08006 * 119.95002 * 0.02794 * 10 9 7 35 35 H 1.08002 * 120.05723 * 180.23478 * 11 10 9 36 36 H 0.97006 * 119.99354 * 179.97438 * 16 15 13 37 37 H 1.08003 * 120.05495 * 179.97438 * 21 12 11 38 38 H 1.07997 * 119.95277 * 179.97438 * 22 21 12 39 39 H 0.96700 * 117.00229 * 180.02562 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9331 0.8531 -0.8427 6 7 4.0589 0.8585 1.2509 7 6 5.2809 0.2919 1.2980 8 8 5.9777 0.2658 0.3020 9 6 5.7733 -0.2971 2.5592 10 6 4.9713 -0.2606 3.7063 11 6 5.4197 -0.8073 4.8718 12 6 6.6967 -1.4002 4.9236 13 6 7.1677 -1.9623 6.1291 14 1 8.2296 -2.0508 6.3050 15 6 6.2570 -2.4059 7.0987 16 7 5.0119 -2.6287 6.7720 17 14 6.8242 -2.6781 8.8576 18 1 7.3463 -1.4033 9.4123 19 1 5.6790 -3.1433 9.6807 20 1 7.8981 -3.7035 8.8784 21 6 7.5022 -1.4297 3.7680 22 6 7.0430 -0.8854 2.6057 23 6 4.0723 2.8579 -0.1244 24 8 4.7674 3.3304 0.7437 25 8 3.7477 3.5936 -1.1991 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9563 0.8899 32 1 1.6767 1.9564 -0.8899 33 1 3.5030 0.8797 2.0456 34 1 3.9941 0.1977 3.6667 35 1 4.7989 -0.7821 5.7551 36 1 4.3820 -2.9360 7.4427 37 1 8.4820 -1.8827 3.8031 38 1 7.6598 -0.9071 1.7194 39 1 4.0937 4.4959 -1.2343 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058241230.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:31 Heat of formation + Delta-G solvation = -129.843450 kcal Electronic energy + Delta-G solvation = -22708.974739 eV Core-core repulsion = 19194.355249 eV Total energy + Delta-G solvation = -3514.619490 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.49440 -38.93318 -37.24216 -36.09920 -35.95002 -33.88580 -33.20701 -30.62404 -29.47121 -29.13590 -25.94378 -25.09555 -22.41470 -21.52140 -21.13728 -20.63393 -19.76445 -18.03294 -17.53842 -17.08324 -16.55042 -16.02918 -15.44285 -15.39314 -14.77041 -14.12980 -13.96942 -13.86875 -13.50552 -13.29737 -13.17876 -12.76548 -12.57345 -12.15514 -11.96602 -11.92120 -11.62589 -11.38650 -11.35287 -11.26791 -11.23765 -10.99446 -10.80891 -10.66732 -10.44634 -10.07724 -9.56533 -9.35563 -9.08448 -8.86328 -7.72573 -7.55600 -7.04673 -4.61213 2.18694 2.29111 2.85636 2.93686 2.95403 3.00340 3.04222 3.65376 3.73308 3.89761 4.50925 4.57577 4.76977 4.87702 5.20104 5.33483 5.35154 5.48199 5.57331 5.65155 5.71260 5.93228 5.98406 6.04389 6.08295 6.20009 6.31192 6.51748 6.70651 6.76982 6.81731 7.02359 7.12433 7.42496 7.62151 7.76531 7.85139 7.95423 8.05885 8.12797 8.38892 8.62188 8.74542 8.97509 9.87254 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.020473 B = 0.003683 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.341118 B = 7601.376458 C = 8309.783706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.120 4.120 4 C 0.162 3.838 5 H 0.124 0.876 6 N -0.720 5.720 7 C 0.580 3.420 8 O -0.572 6.572 9 C -0.283 4.283 10 C -0.060 4.060 11 C -0.178 4.178 12 C 0.130 3.870 13 C -0.442 4.442 14 H 0.085 0.915 15 C 0.075 3.925 16 N -0.771 5.771 17 Si 0.914 3.086 18 H -0.260 1.260 19 H -0.276 1.276 20 H -0.262 1.262 21 C -0.239 4.239 22 C -0.020 4.020 23 C 0.461 3.539 24 O -0.499 6.499 25 O -0.520 6.520 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.404 0.596 34 H 0.088 0.912 35 H 0.121 0.879 36 H 0.287 0.713 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.447 5.643 -7.713 13.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.158 4.158 4 C 0.054 3.946 5 H 0.141 0.859 6 N -0.374 5.374 7 C 0.376 3.624 8 O -0.454 6.454 9 C -0.287 4.287 10 C -0.079 4.079 11 C -0.197 4.197 12 C 0.126 3.874 13 C -0.470 4.470 14 H 0.103 0.897 15 C -0.147 4.147 16 N -0.394 5.394 17 Si 0.737 3.263 18 H -0.185 1.185 19 H -0.200 1.200 20 H -0.186 1.186 21 C -0.258 4.258 22 C -0.039 4.039 23 C 0.300 3.700 24 O -0.384 6.384 25 O -0.332 6.332 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.240 0.760 34 H 0.106 0.894 35 H 0.138 0.862 36 H 0.098 0.902 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -9.145 5.251 -8.049 13.266 hybrid contribution 0.167 0.564 1.178 1.317 sum -8.978 5.815 -6.871 12.714 Atomic orbital electron populations 1.21757 0.95471 1.01891 1.01717 1.21541 0.95950 0.95420 1.03384 1.21864 0.90888 0.99073 1.03974 1.20328 0.95210 0.87347 0.91760 0.85881 1.45737 1.19563 1.60321 1.11758 1.18639 0.79254 0.75581 0.88954 1.90633 1.56479 1.60942 1.37312 1.18793 0.99074 1.18199 0.92633 1.20453 0.96525 0.97722 0.93224 1.20967 0.98579 1.02865 0.97312 1.17784 0.91213 0.86759 0.91613 1.19834 0.94861 1.32907 0.99359 0.89709 1.26098 0.94345 0.92700 1.01510 1.69739 1.04406 1.28977 1.36284 0.86257 0.79458 0.80069 0.80472 1.18461 1.20032 1.18645 1.20713 1.01548 1.10428 0.93138 1.20354 0.93389 0.93378 0.96821 1.24420 0.77561 0.89436 0.78596 1.90745 1.34727 1.72141 1.40828 1.84526 1.72447 1.30713 1.45502 0.92662 0.92783 0.92484 0.91415 0.90935 0.90843 0.89260 0.75956 0.89365 0.86165 0.90164 0.88345 0.88105 0.73636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.13 -1.22 5.82 -26.73 -0.16 -1.37 16 3 C -0.12 -1.18 4.72 -26.73 -0.13 -1.31 16 4 C 0.16 2.24 2.48 -69.08 -0.17 2.07 16 5 H 0.12 1.77 7.58 -51.93 -0.39 1.38 16 6 N -0.72 -12.06 4.01 -55.93 -0.22 -12.28 16 7 C 0.58 12.47 7.59 -12.42 -0.09 12.37 16 8 O -0.57 -13.68 15.99 5.29 0.08 -13.59 16 9 C -0.28 -6.55 5.89 -104.73 -0.62 -7.16 16 10 C -0.06 -1.34 9.47 -39.61 -0.38 -1.72 16 11 C -0.18 -4.37 8.64 -39.27 -0.34 -4.71 16 12 C 0.13 3.31 5.58 -106.80 -0.60 2.72 16 13 C -0.44 -11.01 9.04 -37.75 -0.34 -11.35 16 14 H 0.08 2.01 7.91 -52.49 -0.42 1.60 16 15 C 0.07 1.74 5.14 -17.31 -0.09 1.65 16 16 N -0.77 -18.32 10.95 55.56 0.61 -17.71 16 17 Si 0.91 17.23 29.60 -169.99 -5.03 12.20 16 18 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 19 H -0.28 -5.03 7.11 56.52 0.40 -4.63 16 20 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 21 C -0.24 -5.83 9.73 -39.27 -0.38 -6.21 16 22 C -0.02 -0.48 9.52 -39.61 -0.38 -0.86 16 23 C 0.46 6.85 7.66 36.01 0.28 7.12 16 24 O -0.50 -9.48 17.08 -18.75 -0.32 -9.80 16 25 O -0.52 -5.66 13.23 -39.25 -0.52 -6.17 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.80 7.75 -51.93 -0.40 0.40 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 0.75 7.99 -51.93 -0.42 0.33 16 33 H 0.40 6.10 6.60 -40.82 -0.27 5.83 16 34 H 0.09 1.66 6.37 -52.48 -0.33 1.33 16 35 H 0.12 2.98 6.16 -52.49 -0.32 2.65 16 36 H 0.29 6.14 8.29 -40.82 -0.34 5.80 16 37 H 0.10 2.24 8.06 -52.48 -0.42 1.82 16 38 H 0.10 2.34 7.63 -52.49 -0.40 1.94 16 39 H 0.41 2.78 9.10 45.56 0.41 3.19 16 LS Contribution 337.52 15.07 5.09 5.09 Total: -1.00 -31.22 337.52 -7.54 -38.76 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -4.21 Total: 13.13 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -3.02 Total: -9.61 kcal Atomic # 7 Polarization: -30.38 SS G_CDS: 0.38 Total: -29.99 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.76 Total: -29.57 kcal Atomic # 14 Polarization: 17.23 SS G_CDS: -5.03 Total: 12.20 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.22 -7.54 -38.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058241230.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.079 kcal (2) G-P(sol) polarization free energy of solvation -31.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds