Wall clock time and date at job start Tue Mar 31 2020 06:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47239 * 2 1 4 4 C 1.53005 * 109.47014 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47478 * 55.00145 * 4 3 2 6 6 N 1.46501 * 109.46864 * 294.99754 * 4 3 2 7 7 C 1.34780 * 119.99458 * 154.99997 * 6 4 3 8 8 O 1.21587 * 120.00381 * 0.02562 * 7 6 4 9 9 C 1.47647 * 119.99696 * 180.02562 * 7 6 4 10 10 C 1.40009 * 119.89383 * 359.72320 * 9 7 6 11 11 C 1.36318 * 120.10632 * 179.76167 * 10 9 7 12 12 C 1.40886 * 119.89132 * 0.51274 * 11 10 9 13 13 C 1.41104 * 120.10709 * 179.71896 * 12 11 10 14 14 H 1.07999 * 120.00276 * 204.65685 * 13 12 11 15 15 C 1.40224 * 119.99969 * 24.65698 * 13 12 11 16 16 N 1.30648 * 119.99765 * 17.86172 * 15 13 12 17 17 Si 1.86797 * 120.00205 * 197.86440 * 15 13 12 18 18 H 1.48509 * 109.47095 * 59.99626 * 17 15 13 19 19 H 1.48500 * 109.47584 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47423 * 300.00096 * 17 15 13 21 21 C 1.40894 * 119.79267 * 359.74673 * 12 11 10 22 22 C 1.36318 * 119.89201 * 359.97438 * 21 12 11 23 23 C 1.50702 * 109.46792 * 175.00263 * 4 3 2 24 24 O 1.20826 * 119.99974 * 120.00369 * 23 4 3 25 25 O 1.34227 * 119.99884 * 299.99140 * 23 4 3 26 26 H 1.09004 * 109.46587 * 299.99932 * 1 2 3 27 27 H 1.08997 * 109.47024 * 59.99706 * 1 2 3 28 28 H 1.08995 * 109.46769 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47069 * 239.99877 * 2 1 3 30 30 H 1.09004 * 109.47321 * 120.00146 * 2 1 3 31 31 H 1.08992 * 109.47143 * 60.00079 * 3 2 1 32 32 H 1.08997 * 109.47353 * 300.00093 * 3 2 1 33 33 H 0.96997 * 120.00032 * 335.00489 * 6 4 3 34 34 H 1.08006 * 119.95002 * 0.02794 * 10 9 7 35 35 H 1.08002 * 120.05723 * 180.23478 * 11 10 9 36 36 H 0.97006 * 119.99354 * 179.97438 * 16 15 13 37 37 H 1.08003 * 120.05495 * 179.97438 * 21 12 11 38 38 H 1.07997 * 119.95277 * 179.97438 * 22 21 12 39 39 H 0.96700 * 117.00229 * 180.02562 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9331 0.8531 -0.8427 6 7 4.0589 0.8585 1.2509 7 6 5.2809 0.2919 1.2980 8 8 5.9777 0.2658 0.3020 9 6 5.7733 -0.2971 2.5592 10 6 4.9713 -0.2606 3.7063 11 6 5.4197 -0.8073 4.8718 12 6 6.6967 -1.4002 4.9236 13 6 7.1677 -1.9623 6.1291 14 1 8.2296 -2.0508 6.3050 15 6 6.2570 -2.4059 7.0987 16 7 5.0119 -2.6287 6.7720 17 14 6.8242 -2.6781 8.8576 18 1 7.3463 -1.4033 9.4123 19 1 5.6790 -3.1433 9.6807 20 1 7.8981 -3.7035 8.8784 21 6 7.5022 -1.4297 3.7680 22 6 7.0430 -0.8854 2.6057 23 6 4.0723 2.8579 -0.1244 24 8 4.7674 3.3304 0.7437 25 8 3.7477 3.5936 -1.1991 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9563 0.8899 32 1 1.6767 1.9564 -0.8899 33 1 3.5030 0.8797 2.0456 34 1 3.9941 0.1977 3.6667 35 1 4.7989 -0.7821 5.7551 36 1 4.3820 -2.9360 7.4427 37 1 8.4820 -1.8827 3.8031 38 1 7.6598 -0.9071 1.7194 39 1 4.0937 4.4959 -1.2343 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058241230.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:30 Heat of formation + Delta-G solvation = -149.352768 kcal Electronic energy + Delta-G solvation = -22709.820726 eV Core-core repulsion = 19194.355249 eV Total energy + Delta-G solvation = -3515.465477 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.74911 -40.49117 -38.95931 -37.29449 -37.06309 -35.68423 -34.40870 -32.23684 -31.32042 -30.44574 -27.64521 -26.07641 -24.05609 -22.87785 -22.42996 -21.91903 -21.36466 -19.37560 -19.16675 -18.59955 -17.82326 -17.44103 -16.96457 -16.58371 -15.82007 -15.75473 -15.56199 -15.38757 -15.02715 -14.53090 -14.34558 -14.32209 -13.89968 -13.69885 -13.42098 -13.22671 -12.87015 -12.79495 -12.65454 -12.62871 -12.37598 -12.33320 -12.05868 -11.80011 -11.62446 -11.54464 -11.38140 -11.12170 -10.81215 -10.31472 -9.58821 -9.43351 -8.80023 -6.49239 0.40740 1.12609 1.14452 1.38678 1.43644 1.52226 1.75214 2.14211 2.18361 2.41221 2.79847 3.57238 3.68404 3.90062 4.05648 4.19063 4.29553 4.35299 4.42901 4.44067 4.62407 4.78118 4.88039 4.91416 5.00274 5.01930 5.13989 5.26876 5.28839 5.30698 5.39492 5.49757 5.55735 5.57696 5.79925 5.91817 5.98194 6.21404 6.52237 6.57099 6.75976 6.87650 6.93001 7.33004 8.15111 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.020473 B = 0.003683 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.341118 B = 7601.376458 C = 8309.783706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C -0.108 4.108 4 C 0.156 3.844 5 H 0.120 0.880 6 N -0.705 5.705 7 C 0.580 3.420 8 O -0.601 6.601 9 C -0.295 4.295 10 C -0.051 4.051 11 C -0.198 4.198 12 C 0.102 3.898 13 C -0.473 4.473 14 H 0.086 0.914 15 C 0.039 3.961 16 N -0.795 5.795 17 Si 0.987 3.013 18 H -0.260 1.260 19 H -0.262 1.262 20 H -0.258 1.258 21 C -0.253 4.253 22 C -0.032 4.032 23 C 0.467 3.533 24 O -0.547 6.547 25 O -0.503 6.503 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.412 0.588 34 H 0.123 0.877 35 H 0.115 0.885 36 H 0.298 0.702 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.262 6.277 -7.655 14.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C -0.145 4.145 4 C 0.049 3.951 5 H 0.137 0.863 6 N -0.358 5.358 7 C 0.375 3.625 8 O -0.485 6.485 9 C -0.300 4.300 10 C -0.070 4.070 11 C -0.217 4.217 12 C 0.099 3.901 13 C -0.500 4.500 14 H 0.104 0.896 15 C -0.180 4.180 16 N -0.418 5.418 17 Si 0.807 3.193 18 H -0.184 1.184 19 H -0.186 1.186 20 H -0.183 1.183 21 C -0.273 4.273 22 C -0.052 4.052 23 C 0.309 3.691 24 O -0.437 6.437 25 O -0.315 6.315 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.132 0.868 33 H 0.250 0.750 34 H 0.140 0.860 35 H 0.133 0.867 36 H 0.109 0.891 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -11.015 5.915 -8.035 14.861 hybrid contribution 0.666 0.419 1.009 1.279 sum -10.348 6.334 -7.026 14.020 Atomic orbital electron populations 1.21731 0.93960 1.02211 1.02605 1.21538 0.97227 0.95075 1.02516 1.21880 0.87437 0.99572 1.05657 1.20647 0.97808 0.86759 0.89933 0.86283 1.45532 1.17903 1.59020 1.13368 1.18419 0.80455 0.75803 0.87859 1.90609 1.57719 1.62255 1.37954 1.19110 0.98987 1.17947 0.93917 1.20705 0.97656 0.96580 0.92091 1.21009 0.98611 1.04100 0.97974 1.18135 0.92063 0.87572 0.92316 1.20114 0.95471 1.34152 1.00303 0.89640 1.26915 0.94155 0.91747 1.05197 1.69754 1.05383 1.28679 1.38013 0.85160 0.79288 0.79875 0.74965 1.18380 1.18610 1.18254 1.20852 1.02019 1.11111 0.93292 1.20505 0.94165 0.93758 0.96724 1.24442 0.76415 0.89749 0.78512 1.90741 1.36953 1.73250 1.42716 1.84464 1.71725 1.32020 1.43331 0.92249 0.91411 0.92530 0.91560 0.92667 0.89774 0.86845 0.74952 0.85957 0.86697 0.89075 0.87746 0.88005 0.71219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 71.98 0.71 -1.29 16 2 C -0.13 -2.17 5.82 30.59 0.18 -2.00 16 3 C -0.11 -1.81 4.72 30.60 0.14 -1.67 16 4 C 0.16 4.06 2.48 44.25 0.11 4.16 16 5 H 0.12 3.28 7.58 -2.39 -0.02 3.26 16 6 N -0.71 -22.95 4.01 -449.14 -1.80 -24.75 16 7 C 0.58 24.95 7.59 86.73 0.66 25.61 16 8 O -0.60 -29.00 15.99 -3.99 -0.06 -29.06 16 9 C -0.30 -13.84 5.89 -19.93 -0.12 -13.95 16 10 C -0.05 -2.29 9.47 22.25 0.21 -2.08 16 11 C -0.20 -9.87 8.64 22.47 0.19 -9.67 16 12 C 0.10 5.38 5.58 -21.28 -0.12 5.26 16 13 C -0.47 -24.05 9.04 23.46 0.21 -23.84 16 14 H 0.09 4.16 7.91 -2.91 -0.02 4.14 16 15 C 0.04 1.82 5.14 85.35 0.44 2.26 16 16 N -0.80 -37.73 10.95 21.87 0.24 -37.49 16 17 Si 0.99 34.71 29.60 68.60 2.03 36.74 16 18 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16 19 H -0.26 -8.57 7.11 99.48 0.71 -7.87 16 20 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 21 C -0.25 -12.80 9.73 22.47 0.22 -12.59 16 22 C -0.03 -1.59 9.52 22.25 0.21 -1.38 16 23 C 0.47 13.09 7.66 71.24 0.55 13.63 16 24 O -0.55 -20.36 17.08 21.96 0.38 -19.99 16 25 O -0.50 -9.52 13.23 -51.39 -0.68 -10.20 16 26 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.05 1.14 7.75 -2.38 -0.02 1.13 16 31 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.11 1.44 7.99 -2.39 -0.02 1.42 16 33 H 0.41 11.85 6.60 -92.71 -0.61 11.24 16 34 H 0.12 4.46 6.37 -2.91 -0.02 4.44 16 35 H 0.12 5.78 6.16 -2.91 -0.02 5.76 16 36 H 0.30 12.54 8.29 -92.70 -0.77 11.77 16 37 H 0.10 4.95 8.06 -2.91 -0.02 4.93 16 38 H 0.10 4.89 7.63 -2.91 -0.02 4.86 16 39 H 0.43 4.63 9.10 -74.06 -0.67 3.95 16 Total: -1.00 -68.65 337.52 3.51 -65.14 By element: Atomic # 1 Polarization: 37.35 SS G_CDS: -0.19 Total: 37.16 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: 3.60 Total: -17.55 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: -1.56 Total: -62.24 kcal Atomic # 8 Polarization: -58.88 SS G_CDS: -0.37 Total: -59.25 kcal Atomic # 14 Polarization: 34.71 SS G_CDS: 2.03 Total: 36.74 kcal Total: -68.65 3.51 -65.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058241230.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.215 kcal (2) G-P(sol) polarization free energy of solvation -68.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds