Wall clock time and date at job start Tue Mar 31 2020 06:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47010 * 2 1 4 4 C 1.53008 * 109.46779 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.46995 * 304.99700 * 4 3 2 6 6 N 1.46497 * 109.46879 * 64.99862 * 4 3 2 7 7 C 1.34773 * 119.99924 * 204.99175 * 6 4 3 8 8 O 1.21589 * 119.99791 * 0.02562 * 7 6 4 9 9 C 1.47645 * 120.00312 * 179.97438 * 7 6 4 10 10 C 1.40008 * 119.89323 * 359.73665 * 9 7 6 11 11 C 1.36323 * 120.10732 * 179.71289 * 10 9 7 12 12 C 1.40886 * 119.88648 * 0.57581 * 11 10 9 13 13 C 1.41111 * 120.09878 * 179.67215 * 12 11 10 14 14 H 1.07997 * 120.00047 * 204.65200 * 13 12 11 15 15 C 1.40223 * 119.99943 * 24.65848 * 13 12 11 16 16 N 1.30643 * 120.00357 * 17.85916 * 15 13 12 17 17 Si 1.86809 * 119.99740 * 197.86049 * 15 13 12 18 18 H 1.48498 * 109.47117 * 59.99983 * 17 15 13 19 19 H 1.48502 * 109.47010 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47161 * 299.99734 * 17 15 13 21 21 C 1.40888 * 119.79737 * 359.69745 * 12 11 10 22 22 C 1.36314 * 119.88963 * 0.02562 * 21 12 11 23 23 C 1.50704 * 109.46926 * 184.99816 * 4 3 2 24 24 O 1.20825 * 119.99857 * 240.00484 * 23 4 3 25 25 O 1.34228 * 119.99715 * 59.99771 * 23 4 3 26 26 H 1.09000 * 109.46942 * 60.00306 * 1 2 3 27 27 H 1.09000 * 109.47399 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47610 * 300.00708 * 1 2 3 29 29 H 1.09000 * 109.46942 * 119.99694 * 2 1 3 30 30 H 1.08998 * 109.47067 * 239.99827 * 2 1 3 31 31 H 1.09000 * 109.47018 * 299.99647 * 3 2 1 32 32 H 1.08998 * 109.47347 * 59.99999 * 3 2 1 33 33 H 0.97000 * 120.00401 * 25.00098 * 6 4 3 34 34 H 1.08005 * 119.94740 * 0.02562 * 10 9 7 35 35 H 1.07999 * 120.05205 * 180.24907 * 11 10 9 36 36 H 0.96997 * 120.00320 * 179.97438 * 16 15 13 37 37 H 1.07998 * 120.05644 * 179.97438 * 21 12 11 38 38 H 1.07994 * 119.94737 * 180.02562 * 22 21 12 39 39 H 0.96707 * 116.99539 * 179.97438 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 7 4.0588 0.8585 -1.2508 7 6 5.2808 0.2920 -1.2981 8 8 5.9773 0.2653 -0.3018 9 6 5.7733 -0.2970 -2.5592 10 6 4.9667 -0.2709 -3.7033 11 6 5.4193 -0.8083 -4.8715 12 6 6.6962 -1.4014 -4.9231 13 6 7.1664 -1.9652 -6.1282 14 1 7.9171 -2.7413 -6.1045 15 6 6.6591 -1.5177 -7.3565 16 7 6.0329 -0.3733 -7.4267 17 14 6.8787 -2.5580 -8.8925 18 1 6.2265 -3.8773 -8.6942 19 1 6.2564 -1.8679 -10.0508 20 1 8.3271 -2.7560 -9.1533 21 6 7.5019 -1.4305 -3.7677 22 6 7.0429 -0.8855 -2.6056 23 6 4.0723 2.8579 0.1244 24 8 4.7673 3.3304 -0.7437 25 8 3.7475 3.5937 1.1991 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.5030 0.8796 -2.0456 34 1 3.9863 0.1803 -3.6616 35 1 4.7980 -0.7840 -5.7545 36 1 5.6823 -0.0636 -8.2764 37 1 8.4812 -1.8845 -3.8024 38 1 7.6598 -0.9069 -1.7195 39 1 4.0936 4.4960 1.2342 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058241232.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:33 Heat of formation + Delta-G solvation = -149.497154 kcal Electronic energy + Delta-G solvation = -22708.282951 eV Core-core repulsion = 19192.811213 eV Total energy + Delta-G solvation = -3515.471738 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.75227 -40.49368 -38.96007 -37.29428 -37.06808 -35.68704 -34.40695 -32.23847 -31.32146 -30.44518 -27.64669 -26.07566 -24.05796 -22.87822 -22.42798 -21.91787 -21.36503 -19.37593 -19.16869 -18.60077 -17.82812 -17.43957 -16.96908 -16.58953 -15.81959 -15.75643 -15.55463 -15.38750 -15.02766 -14.52436 -14.35750 -14.31617 -13.90232 -13.69308 -13.43953 -13.20776 -12.87383 -12.78117 -12.66592 -12.63213 -12.37273 -12.33220 -12.05537 -11.80354 -11.62437 -11.53882 -11.38155 -11.12441 -10.81443 -10.31327 -9.58849 -9.43510 -8.79925 -6.49489 0.40650 1.12397 1.14364 1.38776 1.43510 1.52631 1.75042 2.14239 2.18721 2.40896 2.79531 3.57281 3.68162 3.90239 4.05822 4.19235 4.29554 4.35480 4.43265 4.44030 4.62989 4.78325 4.88396 4.91479 5.00976 5.01863 5.14033 5.27201 5.28836 5.30866 5.39733 5.50378 5.55507 5.57671 5.79920 5.91812 5.98141 6.21436 6.52239 6.57026 6.75966 6.87658 6.92506 7.32936 8.15183 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.020448 B = 0.003633 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.025438 B = 7704.924101 C = 8199.719616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C -0.108 4.108 4 C 0.156 3.844 5 H 0.121 0.879 6 N -0.705 5.705 7 C 0.580 3.420 8 O -0.601 6.601 9 C -0.295 4.295 10 C -0.052 4.052 11 C -0.198 4.198 12 C 0.102 3.898 13 C -0.473 4.473 14 H 0.087 0.913 15 C 0.039 3.961 16 N -0.798 5.798 17 Si 0.989 3.011 18 H -0.256 1.256 19 H -0.264 1.264 20 H -0.259 1.259 21 C -0.253 4.253 22 C -0.032 4.032 23 C 0.466 3.534 24 O -0.548 6.548 25 O -0.503 6.503 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.412 0.588 34 H 0.123 0.877 35 H 0.115 0.885 36 H 0.298 0.702 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.599 3.192 8.543 15.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.146 4.146 4 C 0.049 3.951 5 H 0.138 0.862 6 N -0.358 5.358 7 C 0.375 3.625 8 O -0.485 6.485 9 C -0.299 4.299 10 C -0.070 4.070 11 C -0.217 4.217 12 C 0.099 3.901 13 C -0.500 4.500 14 H 0.105 0.895 15 C -0.181 4.181 16 N -0.421 5.421 17 Si 0.808 3.192 18 H -0.181 1.181 19 H -0.188 1.188 20 H -0.183 1.183 21 C -0.272 4.272 22 C -0.052 4.052 23 C 0.308 3.692 24 O -0.438 6.438 25 O -0.315 6.315 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.131 0.869 33 H 0.250 0.750 34 H 0.141 0.859 35 H 0.133 0.867 36 H 0.109 0.891 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -12.221 3.115 8.840 15.402 hybrid contribution 0.683 0.500 -1.023 1.328 sum -11.538 3.616 7.817 14.398 Atomic orbital electron populations 1.21732 0.93981 1.02247 1.02564 1.21535 0.97189 0.94960 1.02604 1.21886 0.87391 0.99705 1.05608 1.20655 0.97833 0.86660 0.89951 0.86171 1.45532 1.17907 1.58999 1.13377 1.18418 0.80444 0.75803 0.87872 1.90609 1.57680 1.62278 1.37958 1.19112 0.99313 1.17706 0.93811 1.20709 0.97882 0.96562 0.91894 1.21013 0.96785 1.06556 0.97337 1.18139 0.91099 0.88060 0.92802 1.20123 1.20441 1.18363 0.91081 0.89521 1.26947 0.91842 0.95103 1.04188 1.69762 1.25307 1.17006 1.30060 0.85143 0.80017 0.78881 0.75133 1.18054 1.18784 1.18318 1.20847 1.00438 1.11535 0.94410 1.20505 0.94163 0.93928 0.96571 1.24493 0.76414 0.89831 0.78495 1.90751 1.36999 1.73283 1.42738 1.84465 1.71717 1.32010 1.43340 0.92300 0.92417 0.91495 0.91492 0.92505 0.89858 0.86893 0.74958 0.85947 0.86707 0.89120 0.87722 0.88001 0.71246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 71.98 0.71 -1.19 16 2 C -0.13 -2.07 5.82 30.59 0.18 -1.89 16 3 C -0.11 -1.80 4.72 30.60 0.14 -1.66 16 4 C 0.16 4.07 2.48 44.25 0.11 4.18 16 5 H 0.12 3.28 7.58 -2.39 -0.02 3.26 16 6 N -0.71 -22.94 4.01 -449.15 -1.80 -24.74 16 7 C 0.58 24.93 7.59 86.73 0.66 25.59 16 8 O -0.60 -28.97 15.98 -4.00 -0.06 -29.03 16 9 C -0.30 -13.82 5.89 -19.93 -0.12 -13.94 16 10 C -0.05 -2.30 9.47 22.25 0.21 -2.09 16 11 C -0.20 -9.87 8.63 22.47 0.19 -9.68 16 12 C 0.10 5.37 5.58 -21.28 -0.12 5.25 16 13 C -0.47 -24.02 9.04 23.46 0.21 -23.81 16 14 H 0.09 4.20 7.91 -2.91 -0.02 4.17 16 15 C 0.04 1.79 5.14 85.35 0.44 2.23 16 16 N -0.80 -38.47 10.95 21.87 0.24 -38.23 16 17 Si 0.99 34.75 29.60 68.60 2.03 36.78 16 18 H -0.26 -8.81 7.11 99.48 0.71 -8.10 16 19 H -0.26 -8.69 7.11 99.48 0.71 -7.98 16 20 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 21 C -0.25 -12.77 9.73 22.47 0.22 -12.55 16 22 C -0.03 -1.60 9.52 22.25 0.21 -1.39 16 23 C 0.47 13.27 7.66 71.24 0.55 13.81 16 24 O -0.55 -20.89 17.08 21.97 0.38 -20.52 16 25 O -0.50 -9.71 13.23 -51.40 -0.68 -10.39 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.69 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 1.12 7.75 -2.39 -0.02 1.10 16 31 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.11 1.43 7.99 -2.39 -0.02 1.41 16 33 H 0.41 11.85 6.60 -92.71 -0.61 11.23 16 34 H 0.12 4.46 6.37 -2.91 -0.02 4.44 16 35 H 0.12 5.78 6.16 -2.91 -0.02 5.76 16 36 H 0.30 12.76 8.29 -92.71 -0.77 11.99 16 37 H 0.10 4.96 8.06 -2.91 -0.02 4.93 16 38 H 0.10 4.89 7.63 -2.91 -0.02 4.86 16 39 H 0.43 4.84 9.10 -74.05 -0.67 4.17 16 Total: -1.00 -69.28 337.52 3.51 -65.77 By element: Atomic # 1 Polarization: 37.70 SS G_CDS: -0.19 Total: 37.51 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: 3.60 Total: -17.15 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: -1.56 Total: -62.97 kcal Atomic # 8 Polarization: -59.57 SS G_CDS: -0.37 Total: -59.94 kcal Atomic # 14 Polarization: 34.75 SS G_CDS: 2.03 Total: 36.78 kcal Total: -69.28 3.51 -65.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058241232.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.729 kcal (2) G-P(sol) polarization free energy of solvation -69.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds