Wall clock time and date at job start Tue Mar 31 2020 06:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47398 * 2 1 4 4 C 1.50697 * 109.46906 * 239.99783 * 2 1 3 5 5 O 1.21292 * 119.99969 * 245.52221 * 4 2 1 6 6 N 1.34775 * 120.00457 * 65.52599 * 4 2 1 7 7 C 1.37090 * 120.00637 * 179.97438 * 6 4 2 8 8 H 1.08003 * 120.00029 * 0.02562 * 7 6 4 9 9 C 1.38952 * 120.00047 * 179.97438 * 7 6 4 10 10 N 1.31404 * 120.00132 * 0.02562 * 9 7 6 11 11 Si 1.86808 * 119.99672 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.46842 * 90.00446 * 11 9 7 13 13 H 1.48501 * 109.46680 * 210.00094 * 11 9 7 14 14 H 1.48500 * 109.46972 * 330.00201 * 11 9 7 15 15 C 1.50703 * 109.47061 * 120.00222 * 2 1 3 16 16 C 1.38246 * 119.94313 * 5.61870 * 15 2 1 17 17 C 1.38204 * 120.11239 * 180.31569 * 16 15 2 18 18 C 1.38700 * 120.06365 * 359.52480 * 17 16 15 19 19 C 1.38973 * 119.82371 * 0.35999 * 18 17 16 20 20 C 1.38198 * 119.94054 * 185.60651 * 15 2 1 21 21 O 1.36112 * 120.78453 * 180.02562 * 19 18 17 22 22 C 1.43169 * 116.71776 * 342.82024 * 21 19 18 23 23 C 1.53467 * 108.25050 * 46.15705 * 22 21 19 24 24 O 1.36108 * 119.39502 * 180.02562 * 18 17 16 25 25 H 1.09000 * 109.47003 * 299.99936 * 1 2 3 26 26 H 1.08996 * 109.46742 * 59.99950 * 1 2 3 27 27 H 1.08997 * 109.47308 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47454 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.46785 * 300.00082 * 3 2 1 30 30 H 1.09000 * 109.46991 * 60.00056 * 3 2 1 31 31 H 0.97004 * 119.99463 * 359.97438 * 6 4 2 32 32 H 0.97001 * 120.00157 * 179.97438 * 10 9 7 33 33 H 1.08001 * 119.94883 * 0.03744 * 16 15 2 34 34 H 1.07999 * 119.96232 * 179.76289 * 17 16 15 35 35 H 1.07993 * 119.97053 * 359.95720 * 20 15 2 36 36 H 1.08998 * 109.70657 * 165.84677 * 22 21 19 37 37 H 1.09000 * 109.70434 * 286.46846 * 22 21 19 38 38 H 1.08990 * 109.71122 * 59.95104 * 23 22 21 39 39 H 1.09008 * 109.70694 * 180.57894 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.6447 -1.7517 -1.1219 6 7 1.8010 -0.1888 -2.4514 7 6 2.2584 -0.8348 -3.5708 8 1 2.8037 -1.7621 -3.4742 9 6 2.0194 -0.2972 -4.8296 10 7 1.3555 0.8306 -4.9472 11 14 2.6421 -1.1780 -6.3548 12 1 1.6058 -2.1264 -6.8364 13 1 2.9336 -0.1820 -7.4171 14 1 3.8817 -1.9255 -6.0234 15 6 2.0323 -0.7105 1.2305 16 6 1.1383 -1.3361 2.0794 17 6 1.5945 -1.9831 3.2122 18 6 2.9520 -2.0147 3.4951 19 6 3.8509 -1.3879 2.6405 20 6 3.3859 -0.7357 1.5081 21 8 5.1871 -1.4073 2.8990 22 6 5.5799 -1.7488 4.2327 23 6 4.7793 -2.9836 4.6682 24 8 3.3864 -2.6562 4.6142 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.3109 0.6438 -2.5382 32 1 1.1890 1.2061 -5.8259 33 1 0.0812 -1.3154 1.8593 34 1 0.8936 -2.4677 3.8757 35 1 4.0822 -0.2470 0.8429 36 1 6.6459 -1.9752 4.2554 37 1 5.3658 -0.9167 4.9033 38 1 4.9883 -3.8139 3.9938 39 1 5.0530 -3.2587 5.6868 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060336307.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:28 Heat of formation + Delta-G solvation = -110.966614 kcal Electronic energy + Delta-G solvation = -23496.896665 eV Core-core repulsion = 19983.095736 eV Total energy + Delta-G solvation = -3513.800929 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.26013 -40.92303 -38.72427 -38.20556 -35.96755 -35.68292 -33.15544 -31.96534 -31.25450 -29.14976 -28.16476 -27.09316 -25.79413 -24.07482 -23.58172 -21.79989 -20.30026 -20.01922 -19.37880 -18.24440 -17.91465 -17.33775 -16.79794 -16.37742 -16.21627 -15.89422 -15.61908 -15.46730 -15.35910 -14.94093 -14.87044 -14.63746 -14.04433 -13.58654 -13.46932 -13.36004 -13.06159 -12.95716 -12.91059 -12.78424 -12.49683 -12.23460 -12.09978 -12.01630 -11.87391 -11.76691 -11.50115 -11.35248 -10.19381 -9.99782 -9.53329 -8.98083 -8.45972 -5.94505 0.30830 0.37055 1.37078 1.40704 1.53313 2.06599 2.08386 2.28480 2.31295 2.68150 3.20630 3.32579 3.32978 3.62926 3.69787 3.94594 4.02739 4.09064 4.10806 4.32619 4.36965 4.40012 4.46533 4.57790 4.59344 4.76842 4.84532 4.89620 4.94234 4.96612 5.14509 5.18052 5.27643 5.35447 5.41970 5.64616 5.70717 5.93962 6.01733 6.45055 6.60515 7.13130 7.57365 8.13236 8.71160 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.024453 B = 0.004058 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.788382 B = 6898.722349 C = 7431.999316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.029 4.029 3 C -0.133 4.133 4 C 0.449 3.551 5 O -0.630 6.630 6 N -0.565 5.565 7 C -0.335 4.335 8 H 0.075 0.925 9 C -0.009 4.009 10 N -0.917 5.917 11 Si 0.990 3.010 12 H -0.270 1.270 13 H -0.269 1.269 14 H -0.276 1.276 15 C -0.050 4.050 16 C -0.112 4.112 17 C -0.114 4.114 18 C 0.034 3.966 19 C 0.036 3.964 20 C -0.107 4.107 21 O -0.333 6.333 22 C 0.013 3.987 23 C 0.015 3.985 24 O -0.317 6.317 25 H 0.102 0.898 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.045 0.955 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.397 0.603 32 H 0.278 0.722 33 H 0.161 0.839 34 H 0.160 0.840 35 H 0.106 0.894 36 H 0.150 0.850 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.186 -0.543 19.024 19.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.032 4.032 3 C -0.190 4.190 4 C 0.237 3.763 5 O -0.517 6.517 6 N -0.201 5.201 7 C -0.465 4.465 8 H 0.093 0.907 9 C -0.209 4.209 10 N -0.558 5.558 11 Si 0.813 3.187 12 H -0.195 1.195 13 H -0.194 1.194 14 H -0.201 1.201 15 C -0.050 4.050 16 C -0.130 4.130 17 C -0.133 4.133 18 C -0.011 4.011 19 C -0.009 4.009 20 C -0.126 4.126 21 O -0.248 6.248 22 C -0.062 4.062 23 C -0.060 4.060 24 O -0.232 6.232 25 H 0.120 0.880 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.112 0.888 31 H 0.232 0.768 32 H 0.088 0.912 33 H 0.178 0.822 34 H 0.177 0.823 35 H 0.125 0.875 36 H 0.168 0.832 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.594 -1.125 18.948 19.048 hybrid contribution 0.590 -0.082 -1.193 1.334 sum 2.184 -1.207 17.755 17.929 Atomic orbital electron populations 1.21943 0.90487 1.02817 1.04103 1.19567 0.98446 0.95931 0.89298 1.21875 1.00780 0.92617 1.03741 1.20666 0.83858 0.86686 0.85122 1.90505 1.46980 1.27084 1.87106 1.41871 1.50025 1.23746 1.04449 1.19654 1.34438 1.07251 0.85156 0.90687 1.25977 0.96802 0.96838 1.01287 1.69659 1.40483 1.19452 1.26205 0.84981 0.78500 0.77976 0.77197 1.19531 1.19353 1.20101 1.19215 0.92224 0.98605 0.94985 1.21199 1.01098 0.97322 0.93399 1.20675 0.92203 1.01851 0.98542 1.18989 0.94040 0.98307 0.89756 1.18871 0.83461 1.00930 0.97599 1.20171 0.95790 1.00711 0.95939 1.86287 1.19396 1.86370 1.32768 1.23984 1.02744 0.98027 0.81439 1.23931 0.78538 0.96819 1.06683 1.86247 1.27629 1.73346 1.36012 0.87967 0.91947 0.92296 0.93623 0.91706 0.88794 0.76844 0.91231 0.82195 0.82252 0.87545 0.83230 0.89735 0.91156 0.82145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 7.11 71.98 0.51 -3.46 16 2 C -0.03 -1.06 0.72 -53.67 -0.04 -1.10 16 3 C -0.13 -4.21 8.07 71.98 0.58 -3.63 16 4 C 0.45 22.25 6.30 87.66 0.55 22.80 16 5 O -0.63 -36.67 15.11 -3.07 -0.05 -36.72 16 6 N -0.56 -29.62 5.12 -306.99 -1.57 -31.19 16 7 C -0.34 -19.47 9.68 84.04 0.81 -18.66 16 8 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 9 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 10 N -0.92 -49.68 13.05 21.66 0.28 -49.40 16 11 Si 0.99 43.61 29.55 68.60 2.03 45.64 16 12 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 13 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 14 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 15 C -0.05 -1.77 4.24 -19.87 -0.08 -1.86 16 16 C -0.11 -3.33 8.99 22.26 0.20 -3.13 16 17 C -0.11 -3.19 9.96 22.37 0.22 -2.97 16 18 C 0.03 1.05 6.49 22.56 0.15 1.19 16 19 C 0.04 1.26 6.49 22.56 0.15 1.41 16 20 C -0.11 -4.14 8.27 22.37 0.19 -3.96 16 21 O -0.33 -10.54 10.42 -82.60 -0.86 -11.40 16 22 C 0.01 0.24 7.26 72.14 0.52 0.76 16 23 C 0.02 0.27 7.26 72.14 0.52 0.79 16 24 O -0.32 -8.19 10.42 -82.55 -0.86 -9.05 16 25 H 0.10 2.17 7.77 -2.39 -0.02 2.15 16 26 H 0.06 1.87 7.96 -2.39 -0.02 1.85 16 27 H 0.06 1.75 7.24 -2.39 -0.02 1.74 16 28 H 0.04 1.55 7.09 -2.39 -0.02 1.53 16 29 H 0.06 2.06 7.27 -2.39 -0.02 2.04 16 30 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.40 19.70 6.81 -92.70 -0.63 19.07 16 32 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 33 H 0.16 3.79 5.90 -2.91 -0.02 3.77 16 34 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 35 H 0.11 4.47 7.24 -2.91 -0.02 4.45 16 36 H 0.15 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.16 1.44 8.14 -2.38 -0.02 1.42 16 Total: -1.00 -74.80 322.87 4.17 -70.63 By element: Atomic # 1 Polarization: 32.86 SS G_CDS: 0.45 Total: 33.31 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: 4.75 Total: -11.82 kcal Atomic # 7 Polarization: -79.30 SS G_CDS: -1.29 Total: -80.59 kcal Atomic # 8 Polarization: -55.40 SS G_CDS: -1.77 Total: -57.16 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -74.80 4.17 -70.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060336307.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.339 kcal (2) G-P(sol) polarization free energy of solvation -74.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds