Wall clock time and date at job start Tue Mar 31 2020 07:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47008 * 2 1 4 4 H 1.08994 * 109.51454 * 305.10311 * 3 2 1 5 5 C 1.53297 * 109.51278 * 184.99982 * 3 2 1 6 6 N 1.47146 * 108.38466 * 187.77859 * 5 3 2 7 7 S 1.65600 * 120.98159 * 230.51340 * 6 5 3 8 8 O 1.42105 * 104.27457 * 333.92796 * 7 6 5 9 9 O 1.42092 * 104.27920 * 206.07081 * 7 6 5 10 10 C 1.81399 * 104.45049 * 89.99543 * 7 6 5 11 11 C 1.53006 * 109.47381 * 180.02562 * 10 7 6 12 12 C 1.52999 * 109.46997 * 180.02562 * 11 10 7 13 13 C 1.50706 * 109.46573 * 180.02562 * 12 11 10 14 14 H 1.07995 * 120.00167 * 359.72054 * 13 12 11 15 15 C 1.37879 * 119.99394 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00338 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99424 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47474 * 90.00322 * 17 15 13 19 19 H 1.48507 * 109.46754 * 210.00056 * 17 15 13 20 20 H 1.48498 * 109.47278 * 329.99887 * 17 15 13 21 21 C 1.47148 * 118.03908 * 50.78567 * 6 5 3 22 22 C 1.53719 * 108.16179 * 309.15851 * 21 6 5 23 23 O 1.42959 * 109.50933 * 65.25445 * 3 2 1 24 24 H 1.08998 * 109.47321 * 60.00002 * 1 2 3 25 25 H 1.08998 * 109.47329 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47148 * 299.99830 * 1 2 3 27 27 H 1.08999 * 109.47148 * 240.00170 * 2 1 3 28 28 H 1.08998 * 109.47321 * 119.99998 * 2 1 3 29 29 H 1.09003 * 109.68156 * 68.05142 * 5 3 2 30 30 H 1.09004 * 109.71219 * 307.51950 * 5 3 2 31 31 H 1.09000 * 109.46960 * 60.00338 * 10 7 6 32 32 H 1.08996 * 109.47404 * 300.00585 * 10 7 6 33 33 H 1.09000 * 109.46866 * 60.00197 * 11 10 7 34 34 H 1.09001 * 109.46611 * 300.00314 * 11 10 7 35 35 H 1.09000 * 109.47486 * 60.00167 * 12 11 10 36 36 H 1.09001 * 109.47362 * 299.99445 * 12 11 10 37 37 H 0.96996 * 119.99730 * 179.97438 * 16 15 13 38 38 H 1.08994 * 109.68520 * 68.93694 * 21 6 5 39 39 H 1.09000 * 109.68050 * 189.49374 * 21 6 5 40 40 H 1.08996 * 109.65762 * 292.57349 * 22 21 6 41 41 H 1.08994 * 109.48657 * 172.39590 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6043 1.9827 -0.8405 5 6 3.5677 1.4455 -0.1259 6 7 4.0464 2.8239 0.0645 7 16 5.0851 3.5229 -1.0194 8 8 5.7728 2.4252 -1.6037 9 8 5.7798 4.5012 -0.2582 10 6 4.0010 4.3164 -2.2382 11 6 4.8527 5.0052 -3.3065 12 6 3.9382 5.6750 -4.3341 13 6 4.7771 6.3529 -5.3866 14 1 5.8547 6.3141 -5.3259 15 6 4.1689 7.0271 -6.4241 16 7 2.8567 7.0791 -6.4950 17 14 5.2088 7.8668 -7.7292 18 1 5.4789 6.9139 -8.8357 19 1 4.4797 9.0470 -8.2592 20 1 6.4943 8.3070 -7.1301 21 6 3.5797 3.5606 1.2497 22 6 2.0471 3.4565 1.3058 23 8 1.6673 2.0807 1.2238 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8552 1.0904 -1.1156 30 1 4.0007 0.7979 0.6365 31 1 3.3744 5.0562 -1.7399 32 1 3.3693 3.5626 -2.7080 33 1 5.4789 4.2652 -3.8047 34 1 5.4846 5.7591 -2.8369 35 1 3.3122 6.4152 -3.8356 36 1 3.3060 4.9215 -4.8037 37 1 2.4289 7.5537 -7.2248 38 1 4.0133 3.1226 2.1486 39 1 3.8751 4.6069 1.1713 40 1 1.6115 4.0048 0.4705 41 1 1.6882 3.8780 2.2447 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068876393.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:31 Heat of formation + Delta-G solvation = -135.672737 kcal Electronic energy + Delta-G solvation = -22116.082907 eV Core-core repulsion = 18736.654592 eV Total energy + Delta-G solvation = -3379.428315 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.66745 -37.05069 -35.85671 -35.08203 -34.70658 -34.24117 -32.22162 -30.34939 -27.86357 -27.26772 -24.54663 -23.80000 -22.41847 -21.16137 -20.48394 -18.88995 -17.76946 -16.93573 -16.69345 -16.29764 -15.84426 -15.51384 -15.13831 -14.96308 -14.51429 -14.24101 -14.19301 -13.90947 -13.47717 -12.65701 -12.54415 -12.34393 -12.22967 -12.15051 -12.03078 -11.84329 -11.74823 -11.67161 -11.32997 -11.31851 -11.21743 -10.94819 -10.89424 -10.64629 -10.56016 -10.30570 -9.99683 -9.45156 -9.21292 -8.89231 -8.43637 -6.08549 -4.11810 0.33628 2.59685 3.28618 3.34827 3.38859 3.47343 3.93316 4.13700 4.39026 4.43829 4.47454 4.65006 4.81650 4.86465 5.00470 5.03671 5.07921 5.13592 5.18552 5.27801 5.28160 5.36927 5.48213 5.58477 5.69747 5.72557 5.79629 5.85332 5.92686 6.07956 6.18189 6.31977 6.39302 6.82356 6.92762 7.52994 7.62529 7.89175 8.29426 8.94340 9.53155 11.02654 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.020300 B = 0.003788 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.979108 B = 7389.166224 C = 8027.714776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C 0.074 3.926 4 H 0.067 0.933 5 C 0.093 3.907 6 N -1.008 6.008 7 S 2.597 3.403 8 O -0.957 6.957 9 O -0.958 6.958 10 C -0.608 4.608 11 C -0.106 4.106 12 C 0.031 3.969 13 C -0.527 4.527 14 H 0.058 0.942 15 C 0.058 3.942 16 N -0.895 5.895 17 Si 0.895 3.105 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.272 1.272 21 C 0.088 3.912 22 C 0.047 3.953 23 O -0.373 6.373 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.020 0.980 36 H 0.020 0.980 37 H 0.262 0.738 38 H 0.078 0.922 39 H 0.100 0.900 40 H 0.059 0.941 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.520 -12.005 16.186 20.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C 0.015 3.985 4 H 0.085 0.915 5 C -0.032 4.032 6 N -0.845 5.845 7 S 2.694 3.306 8 O -0.948 6.948 9 O -0.948 6.948 10 C -0.740 4.740 11 C -0.145 4.145 12 C -0.007 4.007 13 C -0.565 4.565 14 H 0.076 0.924 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.722 3.278 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.038 4.038 22 C -0.032 4.032 23 O -0.292 6.292 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.117 0.883 30 H 0.097 0.903 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.039 0.961 36 H 0.039 0.961 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.118 0.882 40 H 0.077 0.923 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.788 -12.081 16.316 20.652 hybrid contribution -0.078 0.847 -1.187 1.460 sum -3.866 -11.234 15.129 19.236 Atomic orbital electron populations 1.21705 0.94928 1.01620 1.02437 1.21528 0.97034 0.93723 1.03138 1.22592 0.93359 0.94814 0.87769 0.91512 1.22108 0.94693 0.82574 1.03862 1.58035 1.66804 1.22530 1.37155 1.05557 0.75442 0.74571 0.74993 1.93563 1.70506 1.52007 1.78710 1.93561 1.70205 1.62369 1.68657 1.30607 1.15368 1.12846 1.15185 1.21511 0.98305 0.99259 0.95425 1.19063 0.94208 0.95348 0.92113 1.21250 0.93260 1.33377 1.08657 0.92357 1.25017 0.94976 0.96279 0.98054 1.69955 1.08343 1.42867 1.32247 0.86550 0.80374 0.79095 0.81763 1.20541 1.21149 1.19727 1.22166 0.95346 0.97772 0.88515 1.23070 0.93681 0.83370 1.03057 1.87932 1.79673 1.23721 1.37829 0.92712 0.92676 0.91956 0.90117 0.90854 0.88256 0.90326 0.85517 0.85536 0.91555 0.91569 0.96136 0.96127 0.92874 0.90323 0.88189 0.92320 0.87683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.81 37.16 0.36 -0.78 16 2 C -0.12 -0.90 5.64 -26.73 -0.15 -1.05 16 3 C 0.07 0.70 2.78 -26.58 -0.07 0.62 16 4 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 5 C 0.09 0.96 5.79 -3.54 -0.02 0.94 16 6 N -1.01 -11.83 3.27 -112.82 -0.37 -12.20 16 7 S 2.60 38.69 5.42 -107.50 -0.58 38.11 16 8 O -0.96 -16.73 16.81 -57.54 -0.97 -17.70 16 9 O -0.96 -16.70 16.80 -57.54 -0.97 -17.67 16 10 C -0.61 -9.28 6.18 37.16 0.23 -9.05 16 11 C -0.11 -2.12 5.16 -26.73 -0.14 -2.26 16 12 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 13 C -0.53 -14.78 9.11 -34.44 -0.31 -15.09 16 14 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.90 -26.41 13.29 55.43 0.74 -25.67 16 17 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 C 0.09 0.87 6.53 -3.31 -0.02 0.84 16 22 C 0.05 0.41 7.00 37.53 0.26 0.67 16 23 O -0.37 -3.80 9.93 -35.23 -0.35 -4.15 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.52 7.83 -51.93 -0.41 0.11 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.10 0.99 7.23 -51.93 -0.38 0.62 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.13 1.72 8.14 -51.92 -0.42 1.29 16 32 H 0.13 1.72 8.14 -51.93 -0.42 1.30 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.10 0.95 7.22 -51.93 -0.37 0.57 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 345.26 15.07 5.20 5.20 Total: -1.00 -34.36 345.26 -9.45 -43.82 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -7.04 Total: -3.23 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: -0.10 Total: -22.96 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.37 Total: -37.87 kcal Atomic # 8 Polarization: -37.23 SS G_CDS: -2.28 Total: -39.51 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 38.69 SS G_CDS: -0.58 Total: 38.11 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.36 -9.45 -43.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068876393.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.855 kcal (2) G-P(sol) polarization free energy of solvation -34.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds