Wall clock time and date at job start Tue Mar 31 2020 07:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47008 * 2 1 4 4 H 1.08994 * 109.51454 * 305.10311 * 3 2 1 5 5 C 1.53297 * 109.51278 * 184.99982 * 3 2 1 6 6 N 1.47146 * 108.38466 * 187.77859 * 5 3 2 7 7 S 1.65600 * 120.98159 * 230.51340 * 6 5 3 8 8 O 1.42105 * 104.27457 * 333.92796 * 7 6 5 9 9 O 1.42092 * 104.27920 * 206.07081 * 7 6 5 10 10 C 1.81399 * 104.45049 * 89.99543 * 7 6 5 11 11 C 1.53006 * 109.47381 * 180.02562 * 10 7 6 12 12 C 1.52999 * 109.46997 * 180.02562 * 11 10 7 13 13 C 1.50706 * 109.46573 * 180.02562 * 12 11 10 14 14 H 1.07995 * 120.00167 * 359.72054 * 13 12 11 15 15 C 1.37879 * 119.99394 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00338 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99424 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47474 * 90.00322 * 17 15 13 19 19 H 1.48507 * 109.46754 * 210.00056 * 17 15 13 20 20 H 1.48498 * 109.47278 * 329.99887 * 17 15 13 21 21 C 1.47148 * 118.03908 * 50.78567 * 6 5 3 22 22 C 1.53719 * 108.16179 * 309.15851 * 21 6 5 23 23 O 1.42959 * 109.50933 * 65.25445 * 3 2 1 24 24 H 1.08998 * 109.47321 * 60.00002 * 1 2 3 25 25 H 1.08998 * 109.47329 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47148 * 299.99830 * 1 2 3 27 27 H 1.08999 * 109.47148 * 240.00170 * 2 1 3 28 28 H 1.08998 * 109.47321 * 119.99998 * 2 1 3 29 29 H 1.09003 * 109.68156 * 68.05142 * 5 3 2 30 30 H 1.09004 * 109.71219 * 307.51950 * 5 3 2 31 31 H 1.09000 * 109.46960 * 60.00338 * 10 7 6 32 32 H 1.08996 * 109.47404 * 300.00585 * 10 7 6 33 33 H 1.09000 * 109.46866 * 60.00197 * 11 10 7 34 34 H 1.09001 * 109.46611 * 300.00314 * 11 10 7 35 35 H 1.09000 * 109.47486 * 60.00167 * 12 11 10 36 36 H 1.09001 * 109.47362 * 299.99445 * 12 11 10 37 37 H 0.96996 * 119.99730 * 179.97438 * 16 15 13 38 38 H 1.08994 * 109.68520 * 68.93694 * 21 6 5 39 39 H 1.09000 * 109.68050 * 189.49374 * 21 6 5 40 40 H 1.08996 * 109.65762 * 292.57349 * 22 21 6 41 41 H 1.08994 * 109.48657 * 172.39590 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6043 1.9827 -0.8405 5 6 3.5677 1.4455 -0.1259 6 7 4.0464 2.8239 0.0645 7 16 5.0851 3.5229 -1.0194 8 8 5.7728 2.4252 -1.6037 9 8 5.7798 4.5012 -0.2582 10 6 4.0010 4.3164 -2.2382 11 6 4.8527 5.0052 -3.3065 12 6 3.9382 5.6750 -4.3341 13 6 4.7771 6.3529 -5.3866 14 1 5.8547 6.3141 -5.3259 15 6 4.1689 7.0271 -6.4241 16 7 2.8567 7.0791 -6.4950 17 14 5.2088 7.8668 -7.7292 18 1 5.4789 6.9139 -8.8357 19 1 4.4797 9.0470 -8.2592 20 1 6.4943 8.3070 -7.1301 21 6 3.5797 3.5606 1.2497 22 6 2.0471 3.4565 1.3058 23 8 1.6673 2.0807 1.2238 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8552 1.0904 -1.1156 30 1 4.0007 0.7979 0.6365 31 1 3.3744 5.0562 -1.7399 32 1 3.3693 3.5626 -2.7080 33 1 5.4789 4.2652 -3.8047 34 1 5.4846 5.7591 -2.8369 35 1 3.3122 6.4152 -3.8356 36 1 3.3060 4.9215 -4.8037 37 1 2.4289 7.5537 -7.2248 38 1 4.0133 3.1226 2.1486 39 1 3.8751 4.6069 1.1713 40 1 1.6115 4.0048 0.4705 41 1 1.6882 3.8780 2.2447 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068876393.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:31 Heat of formation + Delta-G solvation = -159.756741 kcal Electronic energy + Delta-G solvation = -22117.127268 eV Core-core repulsion = 18736.654592 eV Total energy + Delta-G solvation = -3380.472676 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.42606 -38.34555 -37.15279 -36.50740 -35.92773 -34.91364 -34.18970 -31.05729 -29.69405 -28.07912 -25.66370 -25.27633 -23.26084 -22.35554 -21.70194 -19.99499 -18.88761 -18.58953 -17.73650 -17.32891 -17.29878 -16.53923 -16.35426 -16.10227 -15.81658 -15.50617 -15.11629 -14.56564 -14.51151 -14.16578 -14.09783 -13.58679 -13.49916 -13.29790 -13.27529 -13.02602 -12.94677 -12.77535 -12.69755 -12.65584 -12.43048 -12.20781 -11.96896 -11.82174 -11.78845 -11.56107 -11.36194 -11.26767 -10.88734 -10.58977 -9.80762 -8.24159 -6.35340 -0.87252 1.39789 1.40288 1.51650 1.53202 2.38795 2.72227 2.80224 3.02432 3.09595 3.51440 3.68018 3.78337 3.85260 3.98085 4.12277 4.15974 4.29981 4.34707 4.37894 4.49529 4.59219 4.62299 4.69713 4.81758 4.86381 4.90590 4.99005 5.02903 5.10023 5.16638 5.28516 5.41971 5.43025 5.48418 5.59960 5.77283 6.17652 6.22437 6.80061 7.34249 8.87285 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.020300 B = 0.003788 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.979108 B = 7389.166224 C = 8027.714776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C 0.073 3.927 4 H 0.065 0.935 5 C 0.087 3.913 6 N -1.003 6.003 7 S 2.622 3.378 8 O -0.984 6.984 9 O -0.983 6.983 10 C -0.607 4.607 11 C -0.106 4.106 12 C 0.032 3.968 13 C -0.554 4.554 14 H 0.060 0.940 15 C 0.004 3.996 16 N -0.929 5.929 17 Si 0.963 3.037 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.265 1.265 21 C 0.080 3.920 22 C 0.045 3.955 23 O -0.383 6.383 24 H 0.050 0.950 25 H 0.065 0.935 26 H 0.052 0.948 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.003 0.997 36 H 0.003 0.997 37 H 0.265 0.735 38 H 0.088 0.912 39 H 0.103 0.897 40 H 0.060 0.940 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.508 -12.459 16.741 21.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C 0.014 3.986 4 H 0.083 0.917 5 C -0.038 4.038 6 N -0.842 5.842 7 S 2.720 3.280 8 O -0.974 6.974 9 O -0.973 6.973 10 C -0.738 4.738 11 C -0.145 4.145 12 C -0.007 4.007 13 C -0.592 4.592 14 H 0.078 0.922 15 C -0.194 4.194 16 N -0.569 5.569 17 Si 0.787 3.213 18 H -0.197 1.197 19 H -0.205 1.205 20 H -0.189 1.189 21 C -0.045 4.045 22 C -0.033 4.033 23 O -0.302 6.302 24 H 0.070 0.930 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.111 0.889 28 H 0.095 0.905 29 H 0.120 0.880 30 H 0.106 0.894 31 H 0.162 0.838 32 H 0.161 0.839 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.022 0.978 36 H 0.021 0.979 37 H 0.074 0.926 38 H 0.106 0.894 39 H 0.121 0.879 40 H 0.079 0.921 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.770 -12.535 16.871 21.353 hybrid contribution -0.133 0.955 -1.293 1.613 sum -3.903 -11.580 15.577 19.799 Atomic orbital electron populations 1.21685 0.94859 1.02161 1.01810 1.21565 0.97042 0.92794 1.03945 1.22660 0.92568 0.95779 0.87609 0.91661 1.22325 0.95474 0.81651 1.04383 1.57763 1.66482 1.23122 1.36801 1.04580 0.75166 0.73676 0.74615 1.93524 1.71590 1.52786 1.79485 1.93523 1.71271 1.63353 1.69188 1.30556 1.15314 1.13578 1.14381 1.21318 0.98071 0.99411 0.95682 1.18957 0.94351 0.94596 0.92758 1.21735 0.93810 1.33857 1.09770 0.92183 1.25920 0.96214 0.96921 1.00359 1.70065 1.09985 1.43682 1.33172 0.85484 0.78826 0.78108 0.78886 1.19693 1.20514 1.18917 1.22415 0.96340 0.97862 0.87842 1.23211 0.92685 0.82937 1.04453 1.87930 1.79722 1.24395 1.38110 0.93039 0.91584 0.92845 0.88903 0.90479 0.88039 0.89440 0.83768 0.83876 0.91536 0.91552 0.97847 0.97851 0.92607 0.89399 0.87857 0.92147 0.85353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.81 71.98 0.71 -1.32 16 2 C -0.12 -1.58 5.64 30.59 0.17 -1.41 16 3 C 0.07 1.25 2.78 30.70 0.09 1.34 16 4 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 5 C 0.09 1.64 5.79 86.36 0.50 2.14 16 6 N -1.00 -21.97 3.27 -510.86 -1.67 -23.63 16 7 S 2.62 75.63 5.42 -56.49 -0.31 75.33 16 8 O -0.98 -33.61 16.81 -127.65 -2.15 -35.75 16 9 O -0.98 -33.49 16.80 -127.65 -2.14 -35.63 16 10 C -0.61 -18.03 6.18 71.98 0.44 -17.59 16 11 C -0.11 -4.25 5.16 30.60 0.16 -4.10 16 12 C 0.03 1.62 4.97 29.85 0.15 1.77 16 13 C -0.55 -31.35 9.11 25.60 0.23 -31.11 16 14 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 15 C 0.00 0.24 5.46 84.66 0.46 0.70 16 16 N -0.93 -55.33 13.29 21.45 0.28 -55.05 16 17 Si 0.96 43.90 29.54 68.60 2.03 45.93 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 21 C 0.08 1.44 6.53 86.50 0.56 2.00 16 22 C 0.05 0.69 7.00 72.22 0.51 1.20 16 23 O -0.38 -7.05 9.93 -148.98 -1.48 -8.53 16 24 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.05 0.82 7.83 -2.39 -0.02 0.81 16 27 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.10 1.88 7.23 -2.39 -0.02 1.86 16 30 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 31 H 0.14 3.74 8.14 -2.39 -0.02 3.72 16 32 H 0.14 3.74 8.14 -2.39 -0.02 3.72 16 33 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.07 2.62 8.14 -2.39 -0.02 2.61 16 35 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 36 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 37 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 38 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.10 1.79 7.22 -2.39 -0.02 1.77 16 40 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -72.77 345.26 -0.47 -73.25 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 0.98 Total: 10.48 kcal Atomic # 6 Polarization: -50.37 SS G_CDS: 3.98 Total: -46.39 kcal Atomic # 7 Polarization: -77.30 SS G_CDS: -1.38 Total: -78.68 kcal Atomic # 8 Polarization: -74.14 SS G_CDS: -5.77 Total: -79.91 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: 75.63 SS G_CDS: -0.31 Total: 75.33 kcal Total: -72.77 -0.47 -73.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068876393.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.511 kcal (2) G-P(sol) polarization free energy of solvation -72.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds