Wall clock time and date at job start Tue Mar 31 2020 07:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47476 * 2 1 4 4 H 1.09001 * 109.50961 * 55.09949 * 3 2 1 5 5 C 1.53710 * 109.44684 * 175.39103 * 3 2 1 6 6 N 1.47149 * 108.15947 * 172.37694 * 5 3 2 7 7 S 1.65599 * 120.98309 * 129.43292 * 6 5 3 8 8 O 1.42105 * 104.27797 * 25.78461 * 7 6 5 9 9 O 1.42101 * 104.27901 * 153.64169 * 7 6 5 10 10 C 1.81397 * 104.44825 * 269.71349 * 7 6 5 11 11 C 1.53009 * 109.47235 * 179.97438 * 10 7 6 12 12 C 1.52995 * 109.46990 * 179.97438 * 11 10 7 13 13 C 1.50700 * 109.47073 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99821 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00285 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00002 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00089 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.47082 * 60.00628 * 17 15 13 19 19 H 1.48506 * 109.47003 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47658 * 300.00580 * 17 15 13 21 21 C 1.47149 * 118.03519 * 309.15051 * 6 5 3 22 22 C 1.53295 * 108.38431 * 50.79233 * 21 6 5 23 23 O 1.42957 * 109.22177 * 307.69751 * 22 21 6 24 24 H 1.08994 * 109.46821 * 300.00251 * 1 2 3 25 25 H 1.09002 * 109.46872 * 59.99848 * 1 2 3 26 26 H 1.09002 * 109.46804 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47225 * 240.00013 * 2 1 3 28 28 H 1.09000 * 109.47387 * 120.00093 * 2 1 3 29 29 H 1.08995 * 109.83646 * 52.69217 * 5 3 2 30 30 H 1.08997 * 109.74183 * 291.99875 * 5 3 2 31 31 H 1.09004 * 109.47032 * 299.99803 * 10 7 6 32 32 H 1.09000 * 109.47124 * 60.00075 * 10 7 6 33 33 H 1.08995 * 109.47216 * 300.00010 * 11 10 7 34 34 H 1.09000 * 109.46805 * 60.00123 * 11 10 7 35 35 H 1.08995 * 109.47375 * 300.00190 * 12 11 10 36 36 H 1.09000 * 109.47020 * 60.00531 * 12 11 10 37 37 H 0.96996 * 119.99810 * 179.97438 * 16 15 13 38 38 H 1.09003 * 109.68295 * 170.51339 * 21 6 5 39 39 H 1.08992 * 109.68643 * 291.06829 * 21 6 5 40 40 H 1.09007 * 109.51174 * 67.62066 * 22 21 6 41 41 H 1.08996 * 109.51584 * 187.71963 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6073 1.9817 0.8426 5 6 3.5728 1.4433 0.1165 6 7 4.0462 2.8239 -0.0707 7 16 5.0895 3.5213 1.0098 8 8 5.7793 2.4226 1.5900 9 8 5.7814 4.5004 0.2470 10 6 4.0105 4.3136 2.2339 11 6 4.8667 5.0008 3.2996 12 6 3.9566 5.6696 4.3317 13 6 4.7999 6.3459 5.3817 14 1 5.8772 6.3033 5.3189 15 6 4.1961 7.0199 6.4220 16 7 2.8842 7.0722 6.4982 17 14 5.2414 7.8576 7.7239 18 1 6.1018 8.8843 7.0827 19 1 4.3580 8.5069 8.7256 20 1 6.0954 6.8474 8.3986 21 6 3.5702 3.5644 -1.2499 22 6 2.0418 3.4584 -1.3027 23 8 1.6623 2.0826 -1.2213 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 4.0024 0.8004 -0.6517 30 1 3.8673 1.0848 1.1028 31 1 3.3821 5.0542 1.7391 32 1 3.3806 3.5592 2.7053 33 1 5.4948 4.2600 3.7944 34 1 5.4969 5.7551 2.8285 35 1 3.3288 6.4104 3.8367 36 1 3.3261 4.9156 4.8029 37 1 2.4594 7.5461 7.2303 38 1 3.8629 4.6112 -1.1688 39 1 3.9996 3.1315 -2.1533 40 1 1.6097 4.0055 -0.4647 41 1 1.6796 3.8819 -2.2394 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068876397.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:33 Heat of formation + Delta-G solvation = -135.625430 kcal Electronic energy + Delta-G solvation = -22115.757885 eV Core-core repulsion = 18736.331621 eV Total energy + Delta-G solvation = -3379.426264 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.66389 -37.04957 -35.85561 -35.08472 -34.70626 -34.23637 -32.22028 -30.35811 -27.86256 -27.26679 -24.54539 -23.79789 -22.41347 -21.15984 -20.48312 -18.89014 -17.76947 -16.93108 -16.69209 -16.29654 -15.84197 -15.51404 -15.14548 -14.96049 -14.51815 -14.24175 -14.19279 -13.90651 -13.47939 -12.64962 -12.54273 -12.34532 -12.22762 -12.15093 -12.03019 -11.84258 -11.75201 -11.67198 -11.32820 -11.31430 -11.21495 -10.92088 -10.91426 -10.65154 -10.56116 -10.31065 -9.99231 -9.44984 -9.22286 -8.89251 -8.43149 -6.08267 -4.11637 0.33646 2.59702 3.30391 3.34355 3.37502 3.47327 3.93340 4.13669 4.39066 4.43546 4.47715 4.65451 4.81925 4.86058 5.00626 5.03692 5.07985 5.13580 5.18494 5.27833 5.28254 5.36998 5.48365 5.58420 5.69748 5.72604 5.79652 5.85350 5.92769 6.08043 6.18238 6.32009 6.39332 6.82440 6.92781 7.52910 7.62665 7.89273 8.29573 8.94251 9.53248 11.02895 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.020310 B = 0.003787 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.289637 B = 7391.016055 C = 8028.410502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C 0.074 3.926 4 H 0.067 0.933 5 C 0.093 3.907 6 N -1.008 6.008 7 S 2.597 3.403 8 O -0.957 6.957 9 O -0.958 6.958 10 C -0.608 4.608 11 C -0.106 4.106 12 C 0.031 3.969 13 C -0.528 4.528 14 H 0.058 0.942 15 C 0.059 3.941 16 N -0.895 5.895 17 Si 0.895 3.105 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.088 3.912 22 C 0.047 3.953 23 O -0.373 6.373 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.020 0.980 36 H 0.020 0.980 37 H 0.262 0.738 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.058 0.942 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.598 -11.982 -16.169 20.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C 0.015 3.985 4 H 0.085 0.915 5 C -0.032 4.032 6 N -0.845 5.845 7 S 2.694 3.306 8 O -0.948 6.948 9 O -0.948 6.948 10 C -0.740 4.740 11 C -0.145 4.145 12 C -0.007 4.007 13 C -0.566 4.566 14 H 0.076 0.924 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.723 3.277 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.038 4.038 22 C -0.032 4.032 23 O -0.292 6.292 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.118 0.882 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.039 0.961 36 H 0.039 0.961 37 H 0.072 0.928 38 H 0.118 0.882 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.872 -12.061 -16.298 20.641 hybrid contribution -0.060 0.850 1.179 1.455 sum -3.931 -11.210 -15.119 19.228 Atomic orbital electron populations 1.21706 0.94934 1.01612 1.02437 1.21531 0.97031 0.93745 1.03133 1.22679 0.93285 0.94766 0.87811 0.91473 1.22192 0.94671 0.82484 1.03877 1.58036 1.66586 1.22283 1.37620 1.05561 0.75419 0.74573 0.75019 1.93563 1.70415 1.51956 1.78851 1.93563 1.70318 1.62329 1.68579 1.30608 1.15314 1.12839 1.15239 1.21510 0.98248 0.99272 0.95474 1.19053 0.94235 0.95342 0.92058 1.21211 0.93223 1.33505 1.08694 0.92413 1.25014 0.94986 0.96275 0.98027 1.69946 1.08467 1.42788 1.32214 0.86608 0.80136 0.79784 0.81216 1.20101 1.21212 1.20101 1.22079 0.95322 0.97710 0.88693 1.22990 0.93725 0.83388 1.03069 1.87931 1.79483 1.23655 1.38091 0.92716 0.91953 0.92681 0.90863 0.90119 0.90296 0.88240 0.85520 0.85534 0.91558 0.91569 0.96139 0.96140 0.92817 0.88199 0.90352 0.92362 0.87654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.81 37.16 0.36 -0.78 16 2 C -0.12 -0.90 5.65 -26.73 -0.15 -1.06 16 3 C 0.07 0.70 2.79 -26.36 -0.07 0.62 16 4 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 5 C 0.09 0.96 5.82 -3.32 -0.02 0.94 16 6 N -1.01 -11.83 3.27 -112.83 -0.37 -12.20 16 7 S 2.60 38.69 5.42 -107.50 -0.58 38.10 16 8 O -0.96 -16.73 16.80 -57.54 -0.97 -17.69 16 9 O -0.96 -16.70 16.81 -57.54 -0.97 -17.67 16 10 C -0.61 -9.28 6.18 37.16 0.23 -9.05 16 11 C -0.11 -2.12 5.16 -26.73 -0.14 -2.26 16 12 C 0.03 0.79 4.97 -27.89 -0.14 0.65 16 13 C -0.53 -14.81 9.11 -34.44 -0.31 -15.12 16 14 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.90 -26.41 13.29 55.43 0.74 -25.68 16 17 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 C 0.09 0.87 6.50 -3.54 -0.02 0.84 16 22 C 0.05 0.41 6.98 37.31 0.26 0.67 16 23 O -0.37 -3.80 9.92 -35.23 -0.35 -4.15 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.52 7.82 -51.93 -0.41 0.12 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.10 0.99 7.22 -51.93 -0.37 0.62 16 31 H 0.13 1.72 8.14 -51.92 -0.42 1.29 16 32 H 0.13 1.72 8.14 -51.92 -0.42 1.30 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.10 0.95 7.23 -51.93 -0.38 0.57 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 345.24 15.07 5.20 5.20 Total: -1.00 -34.34 345.24 -9.46 -43.80 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -7.04 Total: -3.20 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: -0.10 Total: -22.97 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.37 Total: -37.87 kcal Atomic # 8 Polarization: -37.23 SS G_CDS: -2.28 Total: -39.51 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 38.69 SS G_CDS: -0.58 Total: 38.10 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.34 -9.46 -43.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068876397.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.828 kcal (2) G-P(sol) polarization free energy of solvation -34.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds