Wall clock time and date at job start Tue Mar 31 2020 07:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47476 * 2 1 4 4 H 1.09001 * 109.50961 * 55.09949 * 3 2 1 5 5 C 1.53710 * 109.44684 * 175.39103 * 3 2 1 6 6 N 1.47149 * 108.15947 * 172.37694 * 5 3 2 7 7 S 1.65599 * 120.98309 * 129.43292 * 6 5 3 8 8 O 1.42105 * 104.27797 * 25.78461 * 7 6 5 9 9 O 1.42101 * 104.27901 * 153.64169 * 7 6 5 10 10 C 1.81397 * 104.44825 * 269.71349 * 7 6 5 11 11 C 1.53009 * 109.47235 * 179.97438 * 10 7 6 12 12 C 1.52995 * 109.46990 * 179.97438 * 11 10 7 13 13 C 1.50700 * 109.47073 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99821 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00285 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00002 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00089 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.47082 * 60.00628 * 17 15 13 19 19 H 1.48506 * 109.47003 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47658 * 300.00580 * 17 15 13 21 21 C 1.47149 * 118.03519 * 309.15051 * 6 5 3 22 22 C 1.53295 * 108.38431 * 50.79233 * 21 6 5 23 23 O 1.42957 * 109.22177 * 307.69751 * 22 21 6 24 24 H 1.08994 * 109.46821 * 300.00251 * 1 2 3 25 25 H 1.09002 * 109.46872 * 59.99848 * 1 2 3 26 26 H 1.09002 * 109.46804 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47225 * 240.00013 * 2 1 3 28 28 H 1.09000 * 109.47387 * 120.00093 * 2 1 3 29 29 H 1.08995 * 109.83646 * 52.69217 * 5 3 2 30 30 H 1.08997 * 109.74183 * 291.99875 * 5 3 2 31 31 H 1.09004 * 109.47032 * 299.99803 * 10 7 6 32 32 H 1.09000 * 109.47124 * 60.00075 * 10 7 6 33 33 H 1.08995 * 109.47216 * 300.00010 * 11 10 7 34 34 H 1.09000 * 109.46805 * 60.00123 * 11 10 7 35 35 H 1.08995 * 109.47375 * 300.00190 * 12 11 10 36 36 H 1.09000 * 109.47020 * 60.00531 * 12 11 10 37 37 H 0.96996 * 119.99810 * 179.97438 * 16 15 13 38 38 H 1.09003 * 109.68295 * 170.51339 * 21 6 5 39 39 H 1.08992 * 109.68643 * 291.06829 * 21 6 5 40 40 H 1.09007 * 109.51174 * 67.62066 * 22 21 6 41 41 H 1.08996 * 109.51584 * 187.71963 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6073 1.9817 0.8426 5 6 3.5728 1.4433 0.1165 6 7 4.0462 2.8239 -0.0707 7 16 5.0895 3.5213 1.0098 8 8 5.7793 2.4226 1.5900 9 8 5.7814 4.5004 0.2470 10 6 4.0105 4.3136 2.2339 11 6 4.8667 5.0008 3.2996 12 6 3.9566 5.6696 4.3317 13 6 4.7999 6.3459 5.3817 14 1 5.8772 6.3033 5.3189 15 6 4.1961 7.0199 6.4220 16 7 2.8842 7.0722 6.4982 17 14 5.2414 7.8576 7.7239 18 1 6.1018 8.8843 7.0827 19 1 4.3580 8.5069 8.7256 20 1 6.0954 6.8474 8.3986 21 6 3.5702 3.5644 -1.2499 22 6 2.0418 3.4584 -1.3027 23 8 1.6623 2.0826 -1.2213 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 4.0024 0.8004 -0.6517 30 1 3.8673 1.0848 1.1028 31 1 3.3821 5.0542 1.7391 32 1 3.3806 3.5592 2.7053 33 1 5.4948 4.2600 3.7944 34 1 5.4969 5.7551 2.8285 35 1 3.3288 6.4104 3.8367 36 1 3.3261 4.9156 4.8029 37 1 2.4594 7.5461 7.2303 38 1 3.8629 4.6112 -1.1688 39 1 3.9996 3.1315 -2.1533 40 1 1.6097 4.0055 -0.4647 41 1 1.6796 3.8819 -2.2394 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068876397.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:33 Heat of formation + Delta-G solvation = -159.689069 kcal Electronic energy + Delta-G solvation = -22116.801362 eV Core-core repulsion = 18736.331621 eV Total energy + Delta-G solvation = -3380.469741 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.42241 -38.34434 -37.15156 -36.50689 -35.92980 -34.90935 -34.18849 -31.06648 -29.69284 -28.07795 -25.66223 -25.27470 -23.25675 -22.35367 -21.70086 -19.99480 -18.88719 -18.58640 -17.73307 -17.32636 -17.29716 -16.54213 -16.35329 -16.10601 -15.82081 -15.50401 -15.11697 -14.56277 -14.50195 -14.16795 -14.10148 -13.58561 -13.49761 -13.29684 -13.27435 -13.02149 -12.94637 -12.74998 -12.69639 -12.67953 -12.43558 -12.21114 -11.96672 -11.82000 -11.78448 -11.55890 -11.37347 -11.26657 -10.88758 -10.58390 -9.80702 -8.23874 -6.35195 -0.87229 1.39815 1.42142 1.50130 1.53177 2.38954 2.72250 2.80230 3.02460 3.09761 3.51410 3.67673 3.78521 3.85264 3.98644 4.12638 4.15554 4.30111 4.34726 4.37784 4.49559 4.59249 4.62287 4.69819 4.81780 4.86347 4.90604 4.98993 5.02952 5.10053 5.16646 5.28583 5.42032 5.42893 5.48466 5.60031 5.77290 6.17738 6.22466 6.79985 7.34326 8.87344 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.020310 B = 0.003787 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.289637 B = 7391.016055 C = 8028.410502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C 0.073 3.927 4 H 0.066 0.934 5 C 0.087 3.913 6 N -1.003 6.003 7 S 2.622 3.378 8 O -0.983 6.983 9 O -0.983 6.983 10 C -0.607 4.607 11 C -0.106 4.106 12 C 0.032 3.968 13 C -0.555 4.555 14 H 0.060 0.940 15 C 0.005 3.995 16 N -0.929 5.929 17 Si 0.962 3.038 18 H -0.267 1.267 19 H -0.281 1.281 20 H -0.267 1.267 21 C 0.080 3.920 22 C 0.045 3.955 23 O -0.383 6.383 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.003 0.997 36 H 0.003 0.997 37 H 0.265 0.735 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.060 0.940 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.576 -12.429 -16.734 21.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C 0.014 3.986 4 H 0.084 0.916 5 C -0.038 4.038 6 N -0.842 5.842 7 S 2.720 3.280 8 O -0.974 6.974 9 O -0.973 6.973 10 C -0.738 4.738 11 C -0.145 4.145 12 C -0.006 4.006 13 C -0.593 4.593 14 H 0.078 0.922 15 C -0.194 4.194 16 N -0.569 5.569 17 Si 0.787 3.213 18 H -0.192 1.192 19 H -0.206 1.206 20 H -0.192 1.192 21 C -0.045 4.045 22 C -0.033 4.033 23 O -0.302 6.302 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.120 0.880 31 H 0.162 0.838 32 H 0.161 0.839 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.021 0.979 36 H 0.021 0.979 37 H 0.074 0.926 38 H 0.121 0.879 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.843 -12.506 -16.863 21.343 hybrid contribution -0.118 0.956 1.287 1.607 sum -3.961 -11.550 -15.577 19.792 Atomic orbital electron populations 1.21686 0.94864 1.02155 1.01809 1.21568 0.97039 0.92819 1.03941 1.22745 0.92490 0.95730 0.87652 0.91622 1.22409 0.95456 0.81556 1.04396 1.57764 1.66261 1.22884 1.37261 1.04582 0.75148 0.73675 0.74638 1.93524 1.71506 1.52737 1.79616 1.93525 1.71386 1.63314 1.69109 1.30557 1.15245 1.13578 1.14447 1.21317 0.98038 0.99422 0.95705 1.18949 0.94364 0.94587 0.92727 1.21709 0.93819 1.33973 1.09797 0.92172 1.25919 0.96241 0.96907 1.00320 1.70060 1.10116 1.43603 1.33100 0.85542 0.78542 0.78864 0.78388 1.19233 1.20578 1.19237 1.22328 0.96305 0.97799 0.88033 1.23132 0.92736 0.82955 1.04462 1.87929 1.79533 1.24330 1.38369 0.93043 0.92842 0.91588 0.90485 0.88907 0.89408 0.88035 0.83768 0.83877 0.91547 0.91539 0.97853 0.97870 0.92602 0.87859 0.89431 0.92190 0.85319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.81 71.98 0.71 -1.33 16 2 C -0.12 -1.59 5.65 30.59 0.17 -1.41 16 3 C 0.07 1.25 2.79 30.83 0.09 1.34 16 4 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 5 C 0.09 1.65 5.82 86.49 0.50 2.15 16 6 N -1.00 -21.96 3.27 -510.89 -1.67 -23.63 16 7 S 2.62 75.62 5.42 -56.49 -0.31 75.31 16 8 O -0.98 -33.60 16.80 -127.65 -2.14 -35.75 16 9 O -0.98 -33.48 16.81 -127.65 -2.15 -35.63 16 10 C -0.61 -18.04 6.18 71.99 0.44 -17.59 16 11 C -0.11 -4.25 5.16 30.60 0.16 -4.10 16 12 C 0.03 1.64 4.97 29.85 0.15 1.79 16 13 C -0.56 -31.42 9.11 25.60 0.23 -31.19 16 14 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 15 C 0.00 0.26 5.46 84.65 0.46 0.72 16 16 N -0.93 -55.34 13.29 21.45 0.28 -55.05 16 17 Si 0.96 43.87 29.54 68.60 2.03 45.90 16 18 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 19 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 21 C 0.08 1.43 6.50 86.35 0.56 1.99 16 22 C 0.05 0.69 6.98 72.08 0.50 1.19 16 23 O -0.38 -7.05 9.92 -148.98 -1.48 -8.53 16 24 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.05 0.83 7.82 -2.39 -0.02 0.81 16 26 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.10 1.88 7.22 -2.39 -0.02 1.86 16 31 H 0.14 3.74 8.14 -2.39 -0.02 3.72 16 32 H 0.14 3.75 8.14 -2.39 -0.02 3.73 16 33 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 36 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 37 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 38 H 0.10 1.79 7.23 -2.39 -0.02 1.77 16 39 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 41 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -72.74 345.24 -0.47 -73.21 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: 0.98 Total: 10.59 kcal Atomic # 6 Polarization: -50.41 SS G_CDS: 3.98 Total: -46.43 kcal Atomic # 7 Polarization: -77.30 SS G_CDS: -1.38 Total: -78.68 kcal Atomic # 8 Polarization: -74.13 SS G_CDS: -5.77 Total: -79.90 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: 75.62 SS G_CDS: -0.31 Total: 75.31 kcal Total: -72.74 -0.47 -73.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068876397.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.476 kcal (2) G-P(sol) polarization free energy of solvation -72.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds