Wall clock time and date at job start Tue Mar 31 2020 06:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.55677 * 2 1 4 4 C 1.53304 * 109.50905 * 120.12924 * 2 1 3 5 5 N 1.47147 * 108.37922 * 172.22682 * 4 2 1 6 6 S 1.65603 * 120.98443 * 129.44096 * 5 4 2 7 7 O 1.42102 * 104.27650 * 333.92473 * 6 5 4 8 8 O 1.42098 * 104.27898 * 206.06533 * 6 5 4 9 9 C 1.81408 * 104.44779 * 89.99239 * 6 5 4 10 10 C 1.53000 * 109.46799 * 180.02562 * 9 6 5 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 6 12 12 C 1.50697 * 109.47466 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99890 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99563 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00432 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46838 * 89.99826 * 16 14 12 18 18 H 1.48497 * 109.47419 * 209.99978 * 16 14 12 19 19 H 1.48499 * 109.47011 * 330.00539 * 16 14 12 20 20 C 1.47152 * 118.03670 * 309.70584 * 5 4 2 21 21 C 1.52879 * 108.60389 * 50.23632 * 20 5 4 22 22 O 1.42959 * 109.50980 * 239.86702 * 2 1 3 23 23 H 1.09003 * 109.46731 * 299.87818 * 1 2 3 24 24 H 1.09000 * 109.46631 * 59.86994 * 1 2 3 25 25 H 1.08998 * 109.47163 * 179.87562 * 1 2 3 26 26 H 1.08999 * 109.47162 * 180.12636 * 3 2 1 27 27 H 1.09003 * 109.47226 * 300.12913 * 3 2 1 28 28 H 1.09005 * 109.47376 * 60.12788 * 3 2 1 29 29 H 1.08999 * 109.68310 * 52.49881 * 4 2 1 30 30 H 1.08998 * 109.71041 * 291.96220 * 4 2 1 31 31 H 1.09001 * 109.46823 * 60.00309 * 9 6 5 32 32 H 1.08992 * 109.47429 * 300.00345 * 9 6 5 33 33 H 1.09002 * 109.47398 * 300.00340 * 10 9 6 34 34 H 1.09001 * 109.47194 * 60.00520 * 10 9 6 35 35 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 36 36 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 37 37 H 0.97002 * 119.99731 * 180.02562 * 15 14 12 38 38 H 1.09005 * 109.68521 * 170.00900 * 20 5 4 39 39 H 1.08996 * 109.68845 * 290.57049 * 20 5 4 40 40 H 1.08997 * 109.58391 * 187.92326 * 21 20 5 41 41 H 1.08995 * 109.41244 * 67.84032 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0422 1.4417 0.0000 4 6 2.0420 -0.7253 1.2498 5 7 3.5011 -0.8763 1.1336 6 16 4.5065 -0.4182 2.3672 7 8 3.7780 0.5876 3.0579 8 8 5.7376 -0.1196 1.7235 9 6 4.6693 -1.9048 3.3941 10 6 5.5856 -1.6058 4.5824 11 6 5.7234 -2.8597 5.4482 12 6 6.6254 -2.5652 6.6190 13 1 7.0568 -1.5819 6.7343 14 6 6.8990 -3.5508 7.5435 15 7 6.3732 -4.7481 7.4034 16 14 8.0176 -3.1859 8.9944 17 1 7.2046 -2.6892 10.1335 18 1 8.7273 -4.4268 9.3966 19 1 9.0100 -2.1516 8.6064 20 6 4.0410 -1.4408 -0.1135 21 6 3.4313 -0.6856 -1.2947 22 8 2.0075 -0.6765 -1.1654 23 1 -0.3633 0.5120 0.8911 24 1 -0.3632 0.5159 -0.8888 25 1 -0.3633 -1.0276 -0.0022 26 1 3.1322 1.4401 -0.0023 27 1 1.6777 1.9567 -0.8888 28 1 1.6815 1.9554 0.8912 29 1 1.5757 -1.7080 1.3209 30 1 1.8031 -0.1405 2.1380 31 1 5.0966 -2.7121 2.7994 32 1 3.6868 -2.2034 3.7595 33 1 6.5682 -1.3069 4.2174 34 1 5.1578 -0.7986 5.1770 35 1 4.7409 -3.1591 5.8132 36 1 6.1513 -3.6667 4.8535 37 1 6.5654 -5.4414 8.0540 38 1 5.1252 -1.3289 -0.1281 39 1 3.7794 -2.4966 -0.1821 40 1 3.7090 -1.1788 -2.2262 41 1 3.8029 0.3390 -1.3004 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068878987.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:49 Heat of formation + Delta-G solvation = -128.758429 kcal Electronic energy + Delta-G solvation = -22324.693678 eV Core-core repulsion = 18945.565190 eV Total energy + Delta-G solvation = -3379.128488 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.05733 -37.05559 -35.84886 -34.99505 -34.69369 -33.89506 -32.20973 -29.25648 -27.84070 -27.59735 -25.97251 -23.75763 -23.24032 -20.62305 -19.91974 -18.82251 -17.78877 -16.94440 -16.66018 -16.09959 -15.91166 -15.31024 -15.06818 -14.95704 -14.60341 -14.40071 -14.17709 -13.53247 -12.67377 -12.62323 -12.53520 -12.41709 -12.30253 -12.21359 -12.11035 -12.00316 -11.82673 -11.74206 -11.60484 -11.44760 -11.27501 -10.94026 -10.87970 -10.52837 -10.43436 -10.31468 -9.98492 -9.48607 -9.21751 -8.83195 -8.42769 -6.07634 -4.10935 0.34830 2.61221 3.29112 3.35262 3.39303 3.46734 3.92813 4.16867 4.38601 4.41760 4.50912 4.68359 4.72705 4.89339 5.05385 5.06211 5.16079 5.19746 5.28772 5.31254 5.37339 5.42751 5.47522 5.52959 5.63796 5.70053 5.76722 5.85222 5.99828 6.01205 6.19953 6.34763 6.40869 6.83544 6.97456 7.54294 7.63881 7.90135 8.30377 8.95227 9.53911 11.03578 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.035031 B = 0.003373 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.108586 B = 8298.180504 C = 8344.620184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.102 3.898 3 C -0.179 4.179 4 C 0.094 3.906 5 N -1.006 6.006 6 S 2.595 3.405 7 O -0.957 6.957 8 O -0.959 6.959 9 C -0.607 4.607 10 C -0.106 4.106 11 C 0.031 3.969 12 C -0.527 4.527 13 H 0.058 0.942 14 C 0.058 3.942 15 N -0.895 5.895 16 Si 0.895 3.105 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.272 1.272 20 C 0.082 3.918 21 C 0.049 3.951 22 O -0.371 6.371 23 H 0.075 0.925 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.104 0.896 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.021 0.979 36 H 0.021 0.979 37 H 0.262 0.738 38 H 0.104 0.896 39 H 0.076 0.924 40 H 0.104 0.896 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.850 7.472 -17.749 22.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.062 3.938 3 C -0.236 4.236 4 C -0.031 4.031 5 N -0.843 5.843 6 S 2.693 3.307 7 O -0.948 6.948 8 O -0.949 6.949 9 C -0.739 4.739 10 C -0.145 4.145 11 C -0.008 4.008 12 C -0.565 4.565 13 H 0.076 0.924 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.722 3.278 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.044 4.044 21 C -0.030 4.030 22 O -0.290 6.290 23 H 0.094 0.906 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.122 0.878 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.039 0.961 36 H 0.039 0.961 37 H 0.071 0.929 38 H 0.122 0.878 39 H 0.095 0.905 40 H 0.122 0.878 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.598 8.088 -17.720 22.175 hybrid contribution 0.667 -0.610 1.135 1.451 sum -9.931 7.478 -16.585 20.727 Atomic orbital electron populations 1.21740 0.91618 1.03160 1.02969 1.21789 0.95024 0.91561 0.85475 1.22402 1.02200 0.95949 1.03085 1.22162 0.79602 1.01673 0.99711 1.57948 1.16685 1.80286 1.29386 1.05543 0.73426 0.77487 0.74207 1.93552 1.72058 1.54793 1.74349 1.93552 1.44224 1.83583 1.73585 1.30580 1.10261 1.19919 1.13104 1.21513 0.96427 1.03251 0.93356 1.19063 0.97508 0.90647 0.93552 1.21249 1.29183 0.97697 1.08398 0.92365 1.25024 0.96153 0.95015 0.98177 1.69961 1.44428 1.02771 1.36249 0.86547 0.80806 0.77797 0.82621 1.20542 1.21147 1.19723 1.22048 1.00111 0.98339 0.83861 1.22831 0.81551 1.00541 0.98033 1.87970 1.20777 1.76946 1.43307 0.90616 0.91465 0.91496 0.92066 0.91691 0.90799 0.90505 0.87795 0.85436 0.85435 0.91611 0.91590 0.96110 0.96099 0.92872 0.87774 0.90540 0.87758 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 8.85 37.16 0.33 -0.71 16 2 C 0.10 1.01 1.11 -90.46 -0.10 0.91 16 3 C -0.18 -1.80 8.10 37.15 0.30 -1.50 16 4 C 0.09 0.99 5.34 -3.53 -0.02 0.97 16 5 N -1.01 -11.82 2.80 -113.30 -0.32 -12.13 16 6 S 2.60 38.58 5.47 -107.50 -0.59 37.99 16 7 O -0.96 -16.36 16.62 -57.54 -0.96 -17.31 16 8 O -0.96 -16.53 16.61 -57.54 -0.96 -17.49 16 9 C -0.61 -9.44 6.18 37.16 0.23 -9.21 16 10 C -0.11 -2.16 5.16 -26.73 -0.14 -2.30 16 11 C 0.03 0.78 4.97 -27.89 -0.14 0.64 16 12 C -0.53 -14.86 9.11 -34.44 -0.31 -15.17 16 13 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 16 Si 0.89 21.55 29.54 -169.99 -5.02 16.52 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 20 C 0.08 0.82 6.64 -3.75 -0.02 0.79 16 21 C 0.05 0.45 6.58 37.10 0.24 0.70 16 22 O -0.37 -3.94 10.23 -35.23 -0.36 -4.30 16 23 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.69 6.11 -51.93 -0.32 0.38 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.10 1.09 6.88 -51.93 -0.36 0.74 16 31 H 0.13 1.78 8.14 -51.92 -0.42 1.36 16 32 H 0.13 1.78 8.14 -51.93 -0.42 1.36 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.10 1.04 6.87 -51.93 -0.36 0.68 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.57 6.25 -51.93 -0.32 0.25 16 LS Contribution 339.52 15.07 5.12 5.12 Total: -1.00 -34.16 339.52 -8.89 -43.05 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -6.82 Total: -2.28 kcal Atomic # 6 Polarization: -23.61 SS G_CDS: 0.27 Total: -23.34 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.42 Total: -37.96 kcal Atomic # 8 Polarization: -36.83 SS G_CDS: -2.27 Total: -39.10 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 38.58 SS G_CDS: -0.59 Total: 37.99 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.16 -8.89 -43.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068878987.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.711 kcal (2) G-P(sol) polarization free energy of solvation -34.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds