Wall clock time and date at job start Tue Mar 31 2020 06:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.55677 * 2 1 4 4 C 1.53304 * 109.50905 * 120.12924 * 2 1 3 5 5 N 1.47147 * 108.37922 * 172.22682 * 4 2 1 6 6 S 1.65603 * 120.98443 * 129.44096 * 5 4 2 7 7 O 1.42102 * 104.27650 * 333.92473 * 6 5 4 8 8 O 1.42098 * 104.27898 * 206.06533 * 6 5 4 9 9 C 1.81408 * 104.44779 * 89.99239 * 6 5 4 10 10 C 1.53000 * 109.46799 * 180.02562 * 9 6 5 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 6 12 12 C 1.50697 * 109.47466 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99890 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99563 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00432 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46838 * 89.99826 * 16 14 12 18 18 H 1.48497 * 109.47419 * 209.99978 * 16 14 12 19 19 H 1.48499 * 109.47011 * 330.00539 * 16 14 12 20 20 C 1.47152 * 118.03670 * 309.70584 * 5 4 2 21 21 C 1.52879 * 108.60389 * 50.23632 * 20 5 4 22 22 O 1.42959 * 109.50980 * 239.86702 * 2 1 3 23 23 H 1.09003 * 109.46731 * 299.87818 * 1 2 3 24 24 H 1.09000 * 109.46631 * 59.86994 * 1 2 3 25 25 H 1.08998 * 109.47163 * 179.87562 * 1 2 3 26 26 H 1.08999 * 109.47162 * 180.12636 * 3 2 1 27 27 H 1.09003 * 109.47226 * 300.12913 * 3 2 1 28 28 H 1.09005 * 109.47376 * 60.12788 * 3 2 1 29 29 H 1.08999 * 109.68310 * 52.49881 * 4 2 1 30 30 H 1.08998 * 109.71041 * 291.96220 * 4 2 1 31 31 H 1.09001 * 109.46823 * 60.00309 * 9 6 5 32 32 H 1.08992 * 109.47429 * 300.00345 * 9 6 5 33 33 H 1.09002 * 109.47398 * 300.00340 * 10 9 6 34 34 H 1.09001 * 109.47194 * 60.00520 * 10 9 6 35 35 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 36 36 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 37 37 H 0.97002 * 119.99731 * 180.02562 * 15 14 12 38 38 H 1.09005 * 109.68521 * 170.00900 * 20 5 4 39 39 H 1.08996 * 109.68845 * 290.57049 * 20 5 4 40 40 H 1.08997 * 109.58391 * 187.92326 * 21 20 5 41 41 H 1.08995 * 109.41244 * 67.84032 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0422 1.4417 0.0000 4 6 2.0420 -0.7253 1.2498 5 7 3.5011 -0.8763 1.1336 6 16 4.5065 -0.4182 2.3672 7 8 3.7780 0.5876 3.0579 8 8 5.7376 -0.1196 1.7235 9 6 4.6693 -1.9048 3.3941 10 6 5.5856 -1.6058 4.5824 11 6 5.7234 -2.8597 5.4482 12 6 6.6254 -2.5652 6.6190 13 1 7.0568 -1.5819 6.7343 14 6 6.8990 -3.5508 7.5435 15 7 6.3732 -4.7481 7.4034 16 14 8.0176 -3.1859 8.9944 17 1 7.2046 -2.6892 10.1335 18 1 8.7273 -4.4268 9.3966 19 1 9.0100 -2.1516 8.6064 20 6 4.0410 -1.4408 -0.1135 21 6 3.4313 -0.6856 -1.2947 22 8 2.0075 -0.6765 -1.1654 23 1 -0.3633 0.5120 0.8911 24 1 -0.3632 0.5159 -0.8888 25 1 -0.3633 -1.0276 -0.0022 26 1 3.1322 1.4401 -0.0023 27 1 1.6777 1.9567 -0.8888 28 1 1.6815 1.9554 0.8912 29 1 1.5757 -1.7080 1.3209 30 1 1.8031 -0.1405 2.1380 31 1 5.0966 -2.7121 2.7994 32 1 3.6868 -2.2034 3.7595 33 1 6.5682 -1.3069 4.2174 34 1 5.1578 -0.7986 5.1770 35 1 4.7409 -3.1591 5.8132 36 1 6.1513 -3.6667 4.8535 37 1 6.5654 -5.4414 8.0540 38 1 5.1252 -1.3289 -0.1281 39 1 3.7794 -2.4966 -0.1821 40 1 3.7090 -1.1788 -2.2262 41 1 3.8029 0.3390 -1.3004 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068878987.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:48 Heat of formation + Delta-G solvation = -152.851439 kcal Electronic energy + Delta-G solvation = -22325.738429 eV Core-core repulsion = 18945.565190 eV Total energy + Delta-G solvation = -3380.173240 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.83158 -38.34008 -37.13760 -36.50607 -35.86836 -34.62068 -34.19112 -30.06013 -29.66384 -28.28173 -26.83314 -25.60843 -24.06662 -22.37213 -20.77891 -19.85992 -18.91857 -18.59475 -17.81458 -17.31006 -17.08306 -16.51768 -16.30704 -16.06236 -15.79236 -15.50794 -15.34898 -14.51863 -14.27432 -14.10281 -13.61116 -13.55876 -13.35672 -13.27225 -13.23306 -13.04804 -12.96633 -12.88738 -12.77456 -12.65420 -12.65214 -12.45032 -12.18125 -12.17786 -11.79371 -11.42713 -11.28762 -11.23336 -10.98903 -10.59445 -9.76328 -8.24485 -6.35914 -0.86162 1.39438 1.40203 1.51635 1.54721 2.38542 2.71445 2.77396 3.04251 3.09080 3.50370 3.68641 3.79005 3.85169 3.96118 4.02068 4.17556 4.32270 4.34019 4.35958 4.58478 4.61921 4.66483 4.72055 4.79231 4.85661 4.90188 4.93039 5.00192 5.01604 5.06738 5.24124 5.34970 5.42350 5.46928 5.59178 5.76771 6.17053 6.23792 6.79507 7.33651 8.87040 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.035031 B = 0.003373 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.108586 B = 8298.180504 C = 8344.620184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.099 3.901 3 C -0.180 4.180 4 C 0.085 3.915 5 N -1.000 6.000 6 S 2.621 3.379 7 O -0.980 6.980 8 O -0.983 6.983 9 C -0.608 4.608 10 C -0.106 4.106 11 C 0.031 3.969 12 C -0.554 4.554 13 H 0.060 0.940 14 C 0.003 3.997 15 N -0.930 5.930 16 Si 0.964 3.036 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.264 1.264 20 C 0.074 3.926 21 C 0.046 3.954 22 O -0.379 6.379 23 H 0.086 0.914 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.044 0.956 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.003 0.997 36 H 0.003 0.997 37 H 0.265 0.735 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.130 0.870 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.373 7.704 -18.409 22.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.058 3.942 3 C -0.238 4.238 4 C -0.040 4.040 5 N -0.839 5.839 6 S 2.718 3.282 7 O -0.970 6.970 8 O -0.974 6.974 9 C -0.739 4.739 10 C -0.145 4.145 11 C -0.007 4.007 12 C -0.592 4.592 13 H 0.079 0.921 14 C -0.195 4.195 15 N -0.570 5.570 16 Si 0.788 3.212 17 H -0.196 1.196 18 H -0.205 1.205 19 H -0.189 1.189 20 C -0.051 4.051 21 C -0.032 4.032 22 O -0.298 6.298 23 H 0.105 0.895 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.063 0.937 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.113 0.887 30 H 0.120 0.880 31 H 0.161 0.839 32 H 0.162 0.838 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.021 0.979 36 H 0.021 0.979 37 H 0.074 0.926 38 H 0.121 0.879 39 H 0.114 0.886 40 H 0.148 0.852 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.117 8.324 -18.375 23.033 hybrid contribution 0.783 -0.694 1.263 1.640 sum -10.333 7.630 -17.112 21.397 Atomic orbital electron populations 1.21759 0.89867 1.03801 1.03804 1.21915 0.96339 0.91001 0.84928 1.22424 1.01135 0.96598 1.03622 1.22422 0.78539 1.02873 1.00153 1.57670 1.17060 1.80264 1.28886 1.04579 0.72929 0.76651 0.74041 1.93517 1.72481 1.55703 1.75333 1.93515 1.45912 1.83877 1.74069 1.30553 1.10109 1.21420 1.11803 1.21321 0.97847 1.00805 0.94567 1.18961 0.95816 0.92388 0.93562 1.21733 1.29828 0.97983 1.09635 0.92149 1.25945 0.97650 0.94777 1.01159 1.70074 1.45715 1.03720 1.37445 0.85465 0.78869 0.77917 0.78947 1.19649 1.20497 1.18870 1.22305 1.00182 0.99487 0.83078 1.22972 0.81014 1.00462 0.98756 1.87968 1.21345 1.76969 1.43511 0.89488 0.90983 0.90947 0.93701 0.90638 0.90822 0.88709 0.88033 0.83860 0.83844 0.91615 0.91526 0.97873 0.97884 0.92586 0.87907 0.88621 0.85212 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 8.85 71.98 0.64 -1.11 16 2 C 0.10 1.77 1.11 -10.69 -0.01 1.75 16 3 C -0.18 -3.42 8.10 71.98 0.58 -2.84 16 4 C 0.09 1.63 5.34 86.36 0.46 2.09 16 5 N -1.00 -22.00 2.80 -512.36 -1.43 -23.44 16 6 S 2.62 75.98 5.47 -56.49 -0.31 75.67 16 7 O -0.98 -33.00 16.62 -127.65 -2.12 -35.12 16 8 O -0.98 -33.44 16.61 -127.65 -2.12 -35.56 16 9 C -0.61 -18.49 6.18 71.98 0.44 -18.04 16 10 C -0.11 -4.35 5.16 30.59 0.16 -4.19 16 11 C 0.03 1.61 4.97 29.85 0.15 1.75 16 12 C -0.55 -31.59 9.11 25.60 0.23 -31.36 16 13 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 14 C 0.00 0.17 5.46 84.65 0.46 0.63 16 15 N -0.93 -55.75 13.29 21.45 0.28 -55.46 16 16 Si 0.96 44.10 29.54 68.60 2.03 46.13 16 17 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 18 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 20 C 0.07 1.34 6.64 86.21 0.57 1.92 16 21 C 0.05 0.76 6.58 71.94 0.47 1.24 16 22 O -0.38 -7.21 10.23 -148.98 -1.52 -8.73 16 23 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.04 0.99 6.11 -2.39 -0.01 0.97 16 27 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.09 1.47 8.14 -2.39 -0.02 1.46 16 30 H 0.10 2.00 6.88 -2.39 -0.02 1.98 16 31 H 0.14 3.86 8.14 -2.39 -0.02 3.84 16 32 H 0.14 3.86 8.14 -2.39 -0.02 3.84 16 33 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 35 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 37 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 38 H 0.10 1.90 6.87 -2.38 -0.02 1.89 16 39 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.05 0.96 6.25 -2.39 -0.01 0.94 16 Total: -1.00 -72.73 339.52 -0.04 -72.77 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 0.99 Total: 11.90 kcal Atomic # 6 Polarization: -52.32 SS G_CDS: 4.16 Total: -48.15 kcal Atomic # 7 Polarization: -77.75 SS G_CDS: -1.15 Total: -78.90 kcal Atomic # 8 Polarization: -73.66 SS G_CDS: -5.76 Total: -79.42 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: 75.98 SS G_CDS: -0.31 Total: 75.67 kcal Total: -72.73 -0.04 -72.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068878987.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.079 kcal (2) G-P(sol) polarization free energy of solvation -72.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds