Wall clock time and date at job start Tue Mar 31 2020 06:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46689 * 2 1 4 4 C 1.52993 * 109.47277 * 120.00152 * 2 1 3 5 5 C 1.50701 * 109.47470 * 299.99976 * 4 2 1 6 6 O 1.21284 * 119.99714 * 0.02562 * 5 4 2 7 7 N 1.34768 * 120.00508 * 180.02562 * 5 4 2 8 8 C 1.39236 * 120.00528 * 184.29432 * 7 5 4 9 9 C 1.39480 * 119.82715 * 324.70481 * 8 7 5 10 10 C 1.36381 * 120.16549 * 180.29896 * 9 8 7 11 11 C 1.40869 * 119.82848 * 359.47804 * 10 9 8 12 12 C 1.41154 * 120.16334 * 180.25024 * 11 10 9 13 13 H 1.07993 * 120.00018 * 215.01626 * 12 11 10 14 14 C 1.39908 * 119.99870 * 35.01821 * 12 11 10 15 15 N 1.30873 * 120.00086 * 355.54709 * 14 12 11 16 16 Si 1.86795 * 119.99875 * 175.54325 * 14 12 11 17 17 H 1.48503 * 109.47041 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47373 * 119.99926 * 16 14 12 19 19 H 1.48499 * 109.47238 * 240.00241 * 16 14 12 20 20 C 1.40869 * 119.67126 * 0.51736 * 11 10 9 21 21 C 1.36377 * 119.82778 * 359.73663 * 20 11 10 22 22 C 1.50701 * 109.46851 * 240.00507 * 2 1 3 23 23 O 1.20832 * 119.99861 * 239.99607 * 22 2 1 24 24 O 1.34230 * 120.00524 * 59.99707 * 22 2 1 25 25 H 1.08996 * 109.47181 * 299.99442 * 1 2 3 26 26 H 1.08997 * 109.47422 * 60.00053 * 1 2 3 27 27 H 1.09005 * 109.47224 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46890 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47611 * 299.99860 * 3 2 1 30 30 H 1.08997 * 109.47299 * 60.00651 * 3 2 1 31 31 H 1.09005 * 109.46900 * 180.02562 * 4 2 1 32 32 H 1.08996 * 109.47295 * 60.00041 * 4 2 1 33 33 H 0.97005 * 120.00034 * 4.28252 * 7 5 4 34 34 H 1.08000 * 119.92230 * 0.02562 * 9 8 7 35 35 H 1.08003 * 120.08522 * 179.70111 * 10 9 8 36 36 H 0.96996 * 119.99711 * 180.02562 * 15 14 12 37 37 H 1.08003 * 120.08620 * 179.70804 * 20 11 10 38 38 H 1.07996 * 119.91582 * 179.97438 * 21 20 11 39 39 H 0.96692 * 117.00343 * 180.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5378 -0.0109 2.4797 6 8 0.8401 0.9749 2.3685 7 7 1.8638 -0.4711 3.7037 8 6 1.3278 0.1305 4.8393 9 6 1.1069 1.5076 4.8561 10 6 0.5879 2.1050 5.9669 11 6 0.2645 1.3258 7.0950 12 6 -0.2779 1.9360 8.2465 13 1 -0.0228 1.5618 9.2269 14 6 -1.1461 3.0255 8.1177 15 7 -1.3870 3.5342 6.9362 16 14 -1.9615 3.7541 9.6321 17 1 -1.5277 3.0030 10.8376 18 1 -1.5685 5.1796 9.7685 19 1 -3.4370 3.6584 9.4943 20 6 0.4904 -0.0644 7.0704 21 6 1.0149 -0.6467 5.9543 22 6 2.0323 -0.7103 -1.2305 23 8 2.7270 -1.6927 -1.1198 24 8 1.7080 -0.2517 -2.4497 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 3.1301 -0.7208 1.2493 32 1 1.6767 -1.7489 1.2492 33 1 2.4718 -1.2216 3.7937 34 1 1.3516 2.1031 3.9890 35 1 0.4220 3.1721 5.9802 36 1 -1.9886 4.2898 6.8470 37 1 0.2493 -0.6675 7.9333 38 1 1.1890 -1.7124 5.9340 39 1 2.0534 -0.7408 -3.2089 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078880425.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:36 Heat of formation + Delta-G solvation = -111.982775 kcal Electronic energy + Delta-G solvation = -22857.258533 eV Core-core repulsion = 19343.413540 eV Total energy + Delta-G solvation = -3513.844993 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.93816 -39.69978 -37.54876 -36.35335 -35.47178 -34.29405 -32.94062 -29.69197 -29.36688 -27.89681 -27.33764 -24.87393 -24.34405 -21.69250 -21.17147 -20.11008 -19.26913 -18.04603 -17.30372 -17.07766 -16.57474 -15.90484 -15.58562 -15.28875 -14.97982 -14.16010 -14.05823 -13.95317 -13.60549 -13.13752 -13.04635 -12.64302 -12.24907 -12.08557 -11.96533 -11.83634 -11.72947 -11.47781 -11.43449 -11.13774 -11.10163 -11.08353 -10.87099 -10.52359 -10.47489 -9.89818 -9.84919 -9.38978 -8.97771 -8.70845 -7.53651 -6.90077 -6.60548 -4.34178 2.03440 2.53197 2.76319 2.97656 3.08138 3.10475 3.15325 3.32226 3.80026 3.98542 4.37292 4.69431 4.73397 4.86684 5.14752 5.23349 5.49378 5.51201 5.65654 5.72982 5.79619 5.85600 5.95637 6.12577 6.28304 6.35141 6.40533 6.42371 6.82699 6.97840 7.03625 7.19059 7.28685 7.62183 7.65728 7.70352 7.96424 8.08748 8.17091 8.32618 8.65835 8.73571 8.92800 9.00190 10.30468 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.033620 B = 0.003242 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.633487 B = 8634.258336 C = 9185.651811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.031 4.031 3 C -0.154 4.154 4 C -0.124 4.124 5 C 0.503 3.497 6 O -0.520 6.520 7 N -0.650 5.650 8 C 0.003 3.997 9 C -0.092 4.092 10 C -0.144 4.144 11 C 0.100 3.900 12 C -0.463 4.463 13 H 0.076 0.924 14 C 0.069 3.931 15 N -0.807 5.807 16 Si 0.914 3.086 17 H -0.263 1.263 18 H -0.274 1.274 19 H -0.275 1.275 20 C -0.204 4.204 21 C -0.113 4.113 22 C 0.490 3.510 23 O -0.520 6.520 24 O -0.511 6.511 25 H 0.107 0.893 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.396 0.604 34 H 0.109 0.891 35 H 0.130 0.870 36 H 0.278 0.722 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.264 -5.579 -12.944 15.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.033 4.033 3 C -0.211 4.211 4 C -0.164 4.164 5 C 0.290 3.710 6 O -0.398 6.398 7 N -0.293 5.293 8 C -0.089 4.089 9 C -0.112 4.112 10 C -0.164 4.164 11 C 0.098 3.902 12 C -0.494 4.494 13 H 0.094 0.906 14 C -0.146 4.146 15 N -0.434 5.434 16 Si 0.740 3.260 17 H -0.186 1.186 18 H -0.200 1.200 19 H -0.200 1.200 20 C -0.224 4.224 21 C -0.133 4.133 22 C 0.332 3.668 23 O -0.409 6.409 24 O -0.322 6.322 25 H 0.125 0.875 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.124 0.876 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.229 0.771 34 H 0.126 0.874 35 H 0.148 0.852 36 H 0.089 0.911 37 H 0.114 0.886 38 H 0.108 0.892 39 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 4.656 -4.749 -12.778 14.405 hybrid contribution 0.106 -0.641 0.033 0.651 sum 4.762 -5.390 -12.745 14.634 Atomic orbital electron populations 1.22154 0.90756 1.02543 1.05675 1.20135 0.98790 0.96728 0.87603 1.22146 1.00421 0.92869 1.05638 1.21561 1.02956 1.00537 0.91391 1.20257 0.81050 0.85358 0.84328 1.90585 1.37753 1.25612 1.85804 1.42985 1.46563 1.34908 1.04816 1.17284 1.11988 0.92338 0.87272 1.20634 1.00294 0.92158 0.98144 1.21304 1.00934 1.00775 0.93433 1.17736 0.88563 0.90447 0.93488 1.19520 1.24025 1.11779 0.94026 0.90620 1.25889 0.96201 0.95436 0.97103 1.69793 1.29870 1.20223 1.23513 0.86162 0.79154 0.79032 0.81700 1.18637 1.19987 1.20005 1.20696 1.09073 0.95025 0.97615 1.20083 1.02279 0.96691 0.94257 1.23635 0.76325 0.81958 0.84851 1.90701 1.36304 1.26471 1.87401 1.84554 1.72129 1.58808 1.16700 0.87494 0.91642 0.92989 0.92977 0.91619 0.87582 0.88386 0.88314 0.77075 0.87352 0.85223 0.91139 0.88568 0.89173 0.73521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 8.11 37.16 0.30 -1.62 16 2 C -0.03 -0.38 0.71 -155.66 -0.11 -0.49 16 3 C -0.15 -1.86 8.11 37.16 0.30 -1.56 16 4 C -0.12 -1.53 4.06 -27.89 -0.11 -1.64 16 5 C 0.50 8.04 7.07 -10.99 -0.08 7.97 16 6 O -0.52 -9.90 8.77 5.55 0.05 -9.85 16 7 N -0.65 -10.77 5.30 -9.74 -0.05 -10.82 16 8 C 0.00 0.07 6.31 -83.57 -0.53 -0.46 16 9 C -0.09 -2.20 8.61 -39.79 -0.34 -2.55 16 10 C -0.14 -3.78 8.61 -39.26 -0.34 -4.12 16 11 C 0.10 2.64 5.55 -106.80 -0.59 2.05 16 12 C -0.46 -12.22 9.02 -37.85 -0.34 -12.56 16 13 H 0.08 1.91 7.85 -52.49 -0.41 1.50 16 14 C 0.07 1.75 5.42 -17.34 -0.09 1.66 16 15 N -0.81 -21.21 10.61 55.55 0.59 -20.62 16 16 Si 0.91 18.95 29.56 -169.99 -5.03 13.92 16 17 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 18 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 19 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 20 C -0.20 -4.85 9.74 -39.26 -0.38 -5.24 16 21 C -0.11 -2.41 9.90 -39.79 -0.39 -2.80 16 22 C 0.49 5.64 6.92 36.01 0.25 5.89 16 23 O -0.52 -7.11 16.74 -18.75 -0.31 -7.42 16 24 O -0.51 -4.54 13.23 -39.26 -0.52 -5.06 16 25 H 0.11 1.62 5.51 -51.93 -0.29 1.34 16 26 H 0.06 0.74 8.11 -51.93 -0.42 0.32 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.72 8.11 -51.93 -0.42 0.30 16 30 H 0.11 1.54 5.51 -51.93 -0.29 1.25 16 31 H 0.10 1.08 8.10 -51.93 -0.42 0.66 16 32 H 0.10 1.12 8.10 -51.93 -0.42 0.70 16 33 H 0.40 5.13 8.82 -40.82 -0.36 4.77 16 34 H 0.11 2.55 6.22 -52.49 -0.33 2.22 16 35 H 0.13 3.56 6.15 -52.48 -0.32 3.24 16 36 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 37 H 0.10 2.14 8.06 -52.48 -0.42 1.71 16 38 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.41 1.78 9.10 45.56 0.41 2.19 16 LS Contribution 325.96 15.07 4.91 4.91 Total: -1.00 -30.78 325.96 -6.91 -37.68 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -4.09 Total: 12.73 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -2.46 Total: -15.46 kcal Atomic # 7 Polarization: -31.99 SS G_CDS: 0.54 Total: -31.45 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.78 Total: -22.34 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.78 -6.91 -37.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078880425.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.298 kcal (2) G-P(sol) polarization free energy of solvation -30.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds