Wall clock time and date at job start Tue Mar 31 2020 06:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46689 * 2 1 4 4 C 1.52993 * 109.47277 * 120.00152 * 2 1 3 5 5 C 1.50701 * 109.47470 * 299.99976 * 4 2 1 6 6 O 1.21284 * 119.99714 * 0.02562 * 5 4 2 7 7 N 1.34768 * 120.00508 * 180.02562 * 5 4 2 8 8 C 1.39236 * 120.00528 * 184.29432 * 7 5 4 9 9 C 1.39480 * 119.82715 * 324.70481 * 8 7 5 10 10 C 1.36381 * 120.16549 * 180.29896 * 9 8 7 11 11 C 1.40869 * 119.82848 * 359.47804 * 10 9 8 12 12 C 1.41154 * 120.16334 * 180.25024 * 11 10 9 13 13 H 1.07993 * 120.00018 * 215.01626 * 12 11 10 14 14 C 1.39908 * 119.99870 * 35.01821 * 12 11 10 15 15 N 1.30873 * 120.00086 * 355.54709 * 14 12 11 16 16 Si 1.86795 * 119.99875 * 175.54325 * 14 12 11 17 17 H 1.48503 * 109.47041 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47373 * 119.99926 * 16 14 12 19 19 H 1.48499 * 109.47238 * 240.00241 * 16 14 12 20 20 C 1.40869 * 119.67126 * 0.51736 * 11 10 9 21 21 C 1.36377 * 119.82778 * 359.73663 * 20 11 10 22 22 C 1.50701 * 109.46851 * 240.00507 * 2 1 3 23 23 O 1.20832 * 119.99861 * 239.99607 * 22 2 1 24 24 O 1.34230 * 120.00524 * 59.99707 * 22 2 1 25 25 H 1.08996 * 109.47181 * 299.99442 * 1 2 3 26 26 H 1.08997 * 109.47422 * 60.00053 * 1 2 3 27 27 H 1.09005 * 109.47224 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46890 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47611 * 299.99860 * 3 2 1 30 30 H 1.08997 * 109.47299 * 60.00651 * 3 2 1 31 31 H 1.09005 * 109.46900 * 180.02562 * 4 2 1 32 32 H 1.08996 * 109.47295 * 60.00041 * 4 2 1 33 33 H 0.97005 * 120.00034 * 4.28252 * 7 5 4 34 34 H 1.08000 * 119.92230 * 0.02562 * 9 8 7 35 35 H 1.08003 * 120.08522 * 179.70111 * 10 9 8 36 36 H 0.96996 * 119.99711 * 180.02562 * 15 14 12 37 37 H 1.08003 * 120.08620 * 179.70804 * 20 11 10 38 38 H 1.07996 * 119.91582 * 179.97438 * 21 20 11 39 39 H 0.96692 * 117.00343 * 180.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5378 -0.0109 2.4797 6 8 0.8401 0.9749 2.3685 7 7 1.8638 -0.4711 3.7037 8 6 1.3278 0.1305 4.8393 9 6 1.1069 1.5076 4.8561 10 6 0.5879 2.1050 5.9669 11 6 0.2645 1.3258 7.0950 12 6 -0.2779 1.9360 8.2465 13 1 -0.0228 1.5618 9.2269 14 6 -1.1461 3.0255 8.1177 15 7 -1.3870 3.5342 6.9362 16 14 -1.9615 3.7541 9.6321 17 1 -1.5277 3.0030 10.8376 18 1 -1.5685 5.1796 9.7685 19 1 -3.4370 3.6584 9.4943 20 6 0.4904 -0.0644 7.0704 21 6 1.0149 -0.6467 5.9543 22 6 2.0323 -0.7103 -1.2305 23 8 2.7270 -1.6927 -1.1198 24 8 1.7080 -0.2517 -2.4497 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 3.1301 -0.7208 1.2493 32 1 1.6767 -1.7489 1.2492 33 1 2.4718 -1.2216 3.7937 34 1 1.3516 2.1031 3.9890 35 1 0.4220 3.1721 5.9802 36 1 -1.9886 4.2898 6.8470 37 1 0.2493 -0.6675 7.9333 38 1 1.1890 -1.7124 5.9340 39 1 2.0534 -0.7408 -3.2089 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078880425.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:35 Heat of formation + Delta-G solvation = -131.557600 kcal Electronic energy + Delta-G solvation = -22858.107361 eV Core-core repulsion = 19343.413540 eV Total energy + Delta-G solvation = -3514.693821 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.96629 -40.96796 -39.20604 -37.20437 -36.71637 -35.79745 -34.67120 -31.46879 -31.08752 -29.24616 -28.31796 -26.56188 -25.34576 -23.31930 -22.88579 -21.48085 -20.50248 -19.20312 -18.89909 -18.22619 -18.11647 -17.02251 -16.79625 -16.67503 -16.36660 -15.74431 -15.24689 -15.13508 -14.93820 -14.56355 -14.45062 -14.10064 -13.85674 -13.67042 -13.38441 -13.10785 -12.98204 -12.81774 -12.68328 -12.55283 -12.42722 -12.27537 -12.05153 -12.04328 -11.69019 -11.64286 -11.45059 -11.11768 -10.60525 -10.29007 -9.41008 -8.70341 -8.47694 -6.30261 0.83870 1.15066 1.16582 1.39967 1.44531 1.55288 1.79389 1.90228 2.25022 2.56594 2.84281 3.39249 3.71113 3.76288 3.85355 4.10492 4.35489 4.46672 4.52171 4.56246 4.56951 4.78185 4.84956 4.86646 4.95989 5.04880 5.15882 5.20332 5.35153 5.38297 5.41817 5.53103 5.57101 5.74480 5.90827 6.12879 6.18832 6.39386 6.72992 6.76302 6.97996 6.99181 7.05356 7.44956 8.45316 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.033620 B = 0.003242 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.633487 B = 8634.258336 C = 9185.651811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.035 4.035 3 C -0.150 4.150 4 C -0.113 4.113 5 C 0.503 3.497 6 O -0.550 6.550 7 N -0.646 5.646 8 C 0.024 3.976 9 C -0.105 4.105 10 C -0.167 4.167 11 C 0.065 3.935 12 C -0.497 4.497 13 H 0.076 0.924 14 C 0.023 3.977 15 N -0.845 5.845 16 Si 0.989 3.011 17 H -0.256 1.256 18 H -0.268 1.268 19 H -0.270 1.270 20 C -0.211 4.211 21 C -0.110 4.110 22 C 0.502 3.498 23 O -0.541 6.541 24 O -0.505 6.505 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.418 0.582 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.282 0.718 37 H 0.109 0.891 38 H 0.133 0.867 39 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.921 -7.468 -14.092 17.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.036 4.036 3 C -0.207 4.207 4 C -0.153 4.153 5 C 0.292 3.708 6 O -0.429 6.429 7 N -0.291 5.291 8 C -0.070 4.070 9 C -0.125 4.125 10 C -0.187 4.187 11 C 0.062 3.938 12 C -0.528 4.528 13 H 0.095 0.905 14 C -0.188 4.188 15 N -0.473 5.473 16 Si 0.810 3.190 17 H -0.179 1.179 18 H -0.193 1.193 19 H -0.195 1.195 20 C -0.231 4.231 21 C -0.130 4.130 22 C 0.345 3.655 23 O -0.432 6.432 24 O -0.319 6.319 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.255 0.745 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.092 0.908 37 H 0.127 0.873 38 H 0.151 0.849 39 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 5.345 -6.671 -13.973 16.381 hybrid contribution -0.026 -0.127 0.163 0.208 sum 5.320 -6.798 -13.810 16.286 Atomic orbital electron populations 1.22056 0.91223 1.02777 1.04659 1.20103 0.98452 0.96740 0.88318 1.22057 1.01035 0.92885 1.04711 1.21524 1.03992 1.00637 0.89132 1.20955 0.80089 0.84764 0.85006 1.90613 1.38892 1.27107 1.86294 1.42921 1.47020 1.35435 1.03689 1.17337 1.09550 0.91392 0.88704 1.20685 1.00774 0.93752 0.97310 1.21174 1.02853 0.99887 0.94819 1.18059 0.89899 0.91965 0.93851 1.19772 1.25551 1.13355 0.94162 0.90537 1.26793 0.96361 0.95441 1.00189 1.69904 1.30828 1.20975 1.25631 0.85057 0.77955 0.78257 0.77759 1.17934 1.19254 1.19494 1.20946 1.08929 0.94183 0.99056 1.20439 1.00743 0.98749 0.93038 1.23214 0.75746 0.81274 0.85253 1.90705 1.37329 1.27315 1.87813 1.84495 1.71784 1.58888 1.16707 0.90470 0.90655 0.92098 0.91903 0.90676 0.90344 0.86419 0.86581 0.74495 0.87742 0.87779 0.90795 0.87295 0.84894 0.70943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 8.11 71.98 0.58 -2.94 16 2 C -0.03 -0.76 0.71 -52.93 -0.04 -0.80 16 3 C -0.15 -3.42 8.11 71.98 0.58 -2.84 16 4 C -0.11 -2.47 4.06 29.85 0.12 -2.35 16 5 C 0.50 15.32 7.07 87.66 0.62 15.94 16 6 O -0.55 -21.04 8.77 -3.04 -0.03 -21.06 16 7 N -0.65 -19.94 5.30 -303.12 -1.61 -21.55 16 8 C 0.02 0.98 6.31 38.56 0.24 1.23 16 9 C -0.11 -5.15 8.61 22.14 0.19 -4.96 16 10 C -0.17 -9.19 8.61 22.48 0.19 -9.00 16 11 C 0.06 3.52 5.55 -21.28 -0.12 3.40 16 12 C -0.50 -27.23 9.02 23.39 0.21 -27.02 16 13 H 0.08 3.99 7.85 -2.91 -0.02 3.97 16 14 C 0.02 1.23 5.42 85.24 0.46 1.69 16 15 N -0.85 -46.56 10.61 21.82 0.23 -46.33 16 16 Si 0.99 39.72 29.56 68.60 2.03 41.75 16 17 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 18 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 19 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 20 C -0.21 -10.01 9.74 22.48 0.22 -9.79 16 21 C -0.11 -4.47 9.90 22.13 0.22 -4.25 16 22 C 0.50 10.03 6.92 71.24 0.49 10.52 16 23 O -0.54 -13.04 16.74 21.95 0.37 -12.67 16 24 O -0.51 -7.32 13.23 -51.41 -0.68 -8.00 16 25 H 0.08 2.34 5.51 -2.39 -0.01 2.32 16 26 H 0.07 1.58 8.11 -2.39 -0.02 1.56 16 27 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 28 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.07 1.54 8.11 -2.39 -0.02 1.52 16 30 H 0.08 2.29 5.51 -2.39 -0.01 2.27 16 31 H 0.12 2.18 8.10 -2.38 -0.02 2.16 16 32 H 0.12 2.21 8.10 -2.39 -0.02 2.20 16 33 H 0.42 9.35 8.82 -92.70 -0.82 8.53 16 34 H 0.10 5.11 6.22 -2.91 -0.02 5.09 16 35 H 0.10 6.16 6.15 -2.91 -0.02 6.14 16 36 H 0.28 14.19 8.30 -92.71 -0.77 13.42 16 37 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 38 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 39 H 0.43 2.22 9.10 -74.06 -0.67 1.55 16 Total: -1.00 -69.32 325.96 3.91 -65.41 By element: Atomic # 1 Polarization: 34.00 SS G_CDS: -0.39 Total: 33.61 kcal Atomic # 6 Polarization: -35.14 SS G_CDS: 3.98 Total: -31.16 kcal Atomic # 7 Polarization: -66.50 SS G_CDS: -1.38 Total: -67.87 kcal Atomic # 8 Polarization: -41.40 SS G_CDS: -0.34 Total: -41.73 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Total: -69.32 3.91 -65.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078880425.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.150 kcal (2) G-P(sol) polarization free energy of solvation -69.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds