Wall clock time and date at job start Tue Mar 31 2020 07:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47343 * 2 1 4 4 H 1.08997 * 109.51050 * 55.10065 * 3 2 1 5 5 C 1.53706 * 109.44341 * 175.38877 * 3 2 1 6 6 N 1.47153 * 108.15825 * 172.37077 * 5 3 2 7 7 S 1.65606 * 120.97959 * 129.43305 * 6 5 3 8 8 O 1.42094 * 104.27817 * 153.64819 * 7 6 5 9 9 O 1.42106 * 104.27580 * 25.79050 * 7 6 5 10 10 C 1.81396 * 104.45103 * 269.72035 * 7 6 5 11 11 C 1.52997 * 109.47360 * 179.97438 * 10 7 6 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 7 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47432 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46890 * 120.00210 * 16 14 12 19 19 H 1.48501 * 109.47062 * 240.00257 * 16 14 12 20 20 C 1.47152 * 118.04149 * 309.16299 * 6 5 3 21 21 C 1.53295 * 108.38588 * 50.78078 * 20 6 5 22 22 H 1.08997 * 109.51256 * 187.72762 * 21 20 6 23 23 C 1.53007 * 109.51009 * 67.62311 * 21 20 6 24 24 O 1.42964 * 109.22261 * 307.70250 * 21 20 6 25 25 H 1.09003 * 109.47222 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47153 * 299.99685 * 1 2 3 27 27 H 1.09002 * 109.47222 * 59.99933 * 1 2 3 28 28 H 1.09006 * 109.46878 * 239.99856 * 2 1 3 29 29 H 1.09002 * 109.47222 * 120.00067 * 2 1 3 30 30 H 1.09002 * 109.83675 * 52.69737 * 5 3 2 31 31 H 1.08988 * 109.74965 * 292.00059 * 5 3 2 32 32 H 1.09002 * 109.47134 * 59.99751 * 10 7 6 33 33 H 1.08998 * 109.46953 * 300.00489 * 10 7 6 34 34 H 1.09002 * 109.47153 * 59.99820 * 11 10 7 35 35 H 1.09001 * 109.46832 * 300.00011 * 11 10 7 36 36 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 37 37 H 1.08996 * 109.68560 * 170.51009 * 20 6 5 38 38 H 1.09004 * 109.67991 * 291.02510 * 20 6 5 39 39 H 1.08996 * 109.46563 * 60.00143 * 23 21 20 40 40 H 1.09001 * 109.46614 * 180.02562 * 23 21 20 41 41 H 1.08993 * 109.46999 * 300.00290 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6072 1.9817 0.8426 5 6 3.5727 1.4433 0.1165 6 7 4.0462 2.8239 -0.0708 7 16 5.0895 3.5213 1.0098 8 8 5.7813 4.5004 0.2470 9 8 5.7792 2.4226 1.5899 10 6 4.0105 4.3136 2.2339 11 6 4.8667 5.0008 3.2996 12 6 3.9703 5.6596 4.3162 13 1 2.8972 5.5943 4.2128 14 6 4.5201 6.3448 5.3789 15 7 5.8268 6.4238 5.5050 16 14 3.4090 7.1607 6.6394 17 1 1.9890 6.9261 6.2732 18 1 3.6755 6.5835 7.9815 19 1 3.6790 8.6207 6.6659 20 6 3.5700 3.5645 -1.2499 21 6 2.0417 3.4585 -1.3027 22 1 1.6795 3.8820 -2.2395 23 6 1.4352 4.2263 -0.1264 24 8 1.6622 2.0825 -1.2213 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.0024 0.8004 -0.6518 31 1 3.8672 1.0848 1.1027 32 1 3.3806 3.5593 2.7053 33 1 3.3821 5.0541 1.7391 34 1 5.4970 5.7551 2.8284 35 1 5.4948 4.2599 3.7943 36 1 6.2135 6.9062 6.2524 37 1 3.8629 4.6113 -1.1689 38 1 4.0000 3.1320 -2.1533 39 1 1.7287 5.2743 -0.1867 40 1 0.3485 4.1501 -0.1644 41 1 1.7964 3.8011 0.8099 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111354301.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:25 Heat of formation + Delta-G solvation = -131.302553 kcal Electronic energy + Delta-G solvation = -22892.411114 eV Core-core repulsion = 19513.172304 eV Total energy + Delta-G solvation = -3379.238810 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.89851 -36.74381 -35.54402 -34.92847 -34.39630 -33.93789 -31.36829 -31.10681 -28.55006 -26.13237 -25.52774 -24.01833 -22.08308 -21.57758 -19.93671 -18.62409 -17.69166 -16.85430 -16.60876 -16.00329 -15.76038 -15.36721 -14.77862 -14.63320 -14.59214 -14.30149 -13.82252 -13.70378 -13.42271 -12.58052 -12.45312 -12.31749 -12.22934 -12.01122 -11.88389 -11.78342 -11.66866 -11.41022 -11.31021 -11.28091 -11.12614 -11.08700 -10.97322 -10.55764 -10.44502 -10.26546 -10.22571 -9.72705 -9.23706 -8.66831 -8.54083 -6.15843 -4.21570 0.66944 2.90488 3.22703 3.30175 3.33242 3.58006 4.23597 4.34957 4.37605 4.57031 4.65049 4.76930 4.91361 4.92535 5.08312 5.09783 5.19489 5.20257 5.25891 5.43103 5.51662 5.54733 5.59942 5.66393 5.73138 5.75614 5.78971 5.80999 5.95010 6.07664 6.13021 6.17772 6.43781 6.52982 7.09524 7.25502 7.31236 7.77099 8.13484 8.81963 9.43489 10.95223 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.018110 B = 0.004905 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.709646 B = 5706.533594 C = 6301.974454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C 0.071 3.929 4 H 0.071 0.929 5 C 0.095 3.905 6 N -1.008 6.008 7 S 2.588 3.412 8 O -0.962 6.962 9 O -0.962 6.962 10 C -0.590 4.590 11 C 0.029 3.971 12 C -0.519 4.519 13 H 0.062 0.938 14 C 0.058 3.942 15 N -0.890 5.890 16 Si 0.899 3.101 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.094 3.906 21 C 0.076 3.924 22 H 0.112 0.888 23 C -0.195 4.195 24 O -0.368 6.368 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.033 0.967 35 H 0.033 0.967 36 H 0.265 0.735 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.202 -9.635 -13.192 19.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C 0.012 3.988 4 H 0.088 0.912 5 C -0.031 4.031 6 N -0.844 5.844 7 S 2.687 3.313 8 O -0.952 6.952 9 O -0.953 6.953 10 C -0.724 4.724 11 C -0.010 4.010 12 C -0.559 4.559 13 H 0.080 0.920 14 C -0.144 4.144 15 N -0.528 5.528 16 Si 0.727 3.273 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.031 4.031 21 C 0.017 3.983 22 H 0.129 0.871 23 C -0.252 4.252 24 O -0.287 6.287 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.116 0.884 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.075 0.925 37 H 0.117 0.883 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.175 -9.720 -13.327 18.875 hybrid contribution -0.977 0.820 1.164 1.727 sum -10.152 -8.900 -12.163 18.172 Atomic orbital electron populations 1.21698 0.95077 1.01450 1.02347 1.21524 0.96878 0.93950 1.03036 1.22664 0.93409 0.94376 0.88388 0.91164 1.22141 0.94522 0.82729 1.03705 1.58083 1.66444 1.22111 1.37800 1.05842 0.75730 0.74593 0.75154 1.93535 1.70593 1.62189 1.68910 1.93537 1.70692 1.52275 1.78756 1.30558 1.14886 1.12028 1.14883 1.18966 0.94536 0.95863 0.91656 1.21019 0.92870 1.33785 1.08199 0.92010 1.25065 0.95178 0.96191 0.98009 1.69963 1.10005 1.41844 1.30983 0.86422 0.80617 0.79185 0.81111 1.19658 1.20770 1.20769 1.22057 0.94563 0.97779 0.88749 1.22559 0.93433 0.82524 0.99816 0.87081 1.22550 1.01920 1.01282 0.99467 1.87964 1.79624 1.23192 1.37913 0.92812 0.92826 0.91982 0.90951 0.90227 0.90553 0.88379 0.86339 0.86181 0.94867 0.94872 0.92550 0.88296 0.90581 0.90898 0.91484 0.91401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.81 37.16 0.36 -0.87 16 2 C -0.12 -1.01 5.65 -26.73 -0.15 -1.17 16 3 C 0.07 0.76 2.40 -26.36 -0.06 0.69 16 4 H 0.07 0.76 6.25 -51.93 -0.32 0.44 16 5 C 0.09 1.14 5.82 -3.32 -0.02 1.13 16 6 N -1.01 -14.01 2.79 -112.83 -0.31 -14.32 16 7 S 2.59 47.03 5.42 -107.50 -0.58 46.45 16 8 O -0.96 -19.95 16.81 -57.54 -0.97 -20.91 16 9 O -0.96 -20.00 16.80 -57.54 -0.97 -20.97 16 10 C -0.59 -11.14 5.33 37.16 0.20 -10.94 16 11 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 12 C -0.52 -14.14 9.11 -34.44 -0.31 -14.46 16 13 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 16 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 C 0.09 1.11 5.88 -3.53 -0.02 1.09 16 21 C 0.08 0.78 3.93 -26.57 -0.10 0.67 16 22 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 23 C -0.19 -2.04 8.58 37.16 0.32 -1.73 16 24 O -0.37 -4.13 9.76 -35.23 -0.34 -4.47 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.45 8.14 -51.92 -0.42 0.02 16 27 H 0.06 0.56 7.82 -51.93 -0.41 0.15 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.10 1.18 7.22 -51.94 -0.37 0.80 16 32 H 0.12 2.00 8.14 -51.92 -0.42 1.58 16 33 H 0.12 2.03 7.50 -51.93 -0.39 1.64 16 34 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.10 1.16 7.22 -51.93 -0.37 0.79 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.78 4.86 -51.93 -0.25 0.53 16 LS Contribution 337.31 15.07 5.08 5.08 Total: -1.00 -33.78 337.31 -9.14 -42.92 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -6.74 Total: -0.76 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: -0.03 Total: -23.46 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.42 Total: -39.84 kcal Atomic # 8 Polarization: -44.08 SS G_CDS: -2.28 Total: -46.36 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 47.03 SS G_CDS: -0.58 Total: 46.45 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.78 -9.14 -42.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111354301.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.386 kcal (2) G-P(sol) polarization free energy of solvation -33.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds