Wall clock time and date at job start Tue Mar 31 2020 07:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47343 * 2 1 4 4 H 1.08997 * 109.51050 * 55.10065 * 3 2 1 5 5 C 1.53706 * 109.44341 * 175.38877 * 3 2 1 6 6 N 1.47153 * 108.15825 * 172.37077 * 5 3 2 7 7 S 1.65606 * 120.97959 * 129.43305 * 6 5 3 8 8 O 1.42094 * 104.27817 * 153.64819 * 7 6 5 9 9 O 1.42106 * 104.27580 * 25.79050 * 7 6 5 10 10 C 1.81396 * 104.45103 * 269.72035 * 7 6 5 11 11 C 1.52997 * 109.47360 * 179.97438 * 10 7 6 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 7 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47432 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46890 * 120.00210 * 16 14 12 19 19 H 1.48501 * 109.47062 * 240.00257 * 16 14 12 20 20 C 1.47152 * 118.04149 * 309.16299 * 6 5 3 21 21 C 1.53295 * 108.38588 * 50.78078 * 20 6 5 22 22 H 1.08997 * 109.51256 * 187.72762 * 21 20 6 23 23 C 1.53007 * 109.51009 * 67.62311 * 21 20 6 24 24 O 1.42964 * 109.22261 * 307.70250 * 21 20 6 25 25 H 1.09003 * 109.47222 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47153 * 299.99685 * 1 2 3 27 27 H 1.09002 * 109.47222 * 59.99933 * 1 2 3 28 28 H 1.09006 * 109.46878 * 239.99856 * 2 1 3 29 29 H 1.09002 * 109.47222 * 120.00067 * 2 1 3 30 30 H 1.09002 * 109.83675 * 52.69737 * 5 3 2 31 31 H 1.08988 * 109.74965 * 292.00059 * 5 3 2 32 32 H 1.09002 * 109.47134 * 59.99751 * 10 7 6 33 33 H 1.08998 * 109.46953 * 300.00489 * 10 7 6 34 34 H 1.09002 * 109.47153 * 59.99820 * 11 10 7 35 35 H 1.09001 * 109.46832 * 300.00011 * 11 10 7 36 36 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 37 37 H 1.08996 * 109.68560 * 170.51009 * 20 6 5 38 38 H 1.09004 * 109.67991 * 291.02510 * 20 6 5 39 39 H 1.08996 * 109.46563 * 60.00143 * 23 21 20 40 40 H 1.09001 * 109.46614 * 180.02562 * 23 21 20 41 41 H 1.08993 * 109.46999 * 300.00290 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6072 1.9817 0.8426 5 6 3.5727 1.4433 0.1165 6 7 4.0462 2.8239 -0.0708 7 16 5.0895 3.5213 1.0098 8 8 5.7813 4.5004 0.2470 9 8 5.7792 2.4226 1.5899 10 6 4.0105 4.3136 2.2339 11 6 4.8667 5.0008 3.2996 12 6 3.9703 5.6596 4.3162 13 1 2.8972 5.5943 4.2128 14 6 4.5201 6.3448 5.3789 15 7 5.8268 6.4238 5.5050 16 14 3.4090 7.1607 6.6394 17 1 1.9890 6.9261 6.2732 18 1 3.6755 6.5835 7.9815 19 1 3.6790 8.6207 6.6659 20 6 3.5700 3.5645 -1.2499 21 6 2.0417 3.4585 -1.3027 22 1 1.6795 3.8820 -2.2395 23 6 1.4352 4.2263 -0.1264 24 8 1.6622 2.0825 -1.2213 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.0024 0.8004 -0.6518 31 1 3.8672 1.0848 1.1027 32 1 3.3806 3.5593 2.7053 33 1 3.3821 5.0541 1.7391 34 1 5.4970 5.7551 2.8284 35 1 5.4948 4.2599 3.7943 36 1 6.2135 6.9062 6.2524 37 1 3.8629 4.6113 -1.1689 38 1 4.0000 3.1320 -2.1533 39 1 1.7287 5.2743 -0.1867 40 1 0.3485 4.1501 -0.1644 41 1 1.7964 3.8011 0.8099 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111354301.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:25 Heat of formation + Delta-G solvation = -155.201123 kcal Electronic energy + Delta-G solvation = -22893.447434 eV Core-core repulsion = 19513.172304 eV Total energy + Delta-G solvation = -3380.275130 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.78032 -38.31594 -37.11164 -35.96591 -35.88841 -35.19802 -33.18416 -32.04221 -29.41836 -27.70961 -26.86798 -24.93470 -23.50782 -22.80154 -20.87662 -19.89018 -19.19419 -18.42800 -17.78150 -17.25129 -17.13160 -16.61833 -16.43547 -15.91249 -15.56125 -15.32376 -15.12482 -14.58776 -14.51706 -14.41924 -13.77193 -13.49782 -13.29903 -13.27325 -13.23188 -12.99106 -12.96178 -12.84274 -12.78717 -12.67487 -12.29316 -12.16399 -12.09032 -11.98695 -11.83303 -11.77136 -11.45976 -11.06054 -10.87846 -10.66911 -9.72414 -8.27325 -6.41337 -0.80808 1.40522 1.40767 1.53976 1.61134 2.36890 2.76757 2.79946 3.05377 3.06983 3.56426 3.69940 3.91772 3.99948 4.04183 4.09321 4.12237 4.26075 4.31884 4.40132 4.49461 4.64610 4.69022 4.74575 4.80571 4.88143 4.93732 4.98027 5.15997 5.18984 5.22891 5.23716 5.28807 5.35163 5.49172 5.51821 5.66885 6.04150 6.27493 6.72276 7.29117 8.85219 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.018110 B = 0.004905 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.709646 B = 5706.533594 C = 6301.974454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C 0.072 3.928 4 H 0.070 0.930 5 C 0.087 3.913 6 N -0.999 5.999 7 S 2.608 3.392 8 O -0.991 6.991 9 O -0.992 6.992 10 C -0.585 4.585 11 C 0.023 3.977 12 C -0.536 4.536 13 H 0.076 0.924 14 C -0.003 4.003 15 N -0.934 5.934 16 Si 0.973 3.027 17 H -0.255 1.255 18 H -0.278 1.278 19 H -0.278 1.278 20 C 0.085 3.915 21 C 0.080 3.920 22 H 0.138 0.862 23 C -0.199 4.199 24 O -0.372 6.372 25 H 0.065 0.935 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.006 0.994 35 H 0.006 0.994 36 H 0.267 0.733 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.667 -10.088 -13.853 21.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.153 4.153 3 C 0.013 3.987 4 H 0.087 0.913 5 C -0.038 4.038 6 N -0.838 5.838 7 S 2.707 3.293 8 O -0.981 6.981 9 O -0.982 6.982 10 C -0.718 4.718 11 C -0.016 4.016 12 C -0.575 4.575 13 H 0.094 0.906 14 C -0.201 4.201 15 N -0.574 5.574 16 Si 0.797 3.203 17 H -0.179 1.179 18 H -0.204 1.204 19 H -0.204 1.204 20 C -0.040 4.040 21 C 0.021 3.979 22 H 0.155 0.845 23 C -0.256 4.256 24 O -0.291 6.291 25 H 0.084 0.916 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.114 0.886 32 H 0.158 0.842 33 H 0.159 0.841 34 H 0.024 0.976 35 H 0.024 0.976 36 H 0.076 0.924 37 H 0.116 0.884 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.651 -10.174 -13.990 20.856 hybrid contribution -0.208 0.909 1.280 1.584 sum -11.859 -9.265 -12.710 19.699 Atomic orbital electron populations 1.21670 0.94631 1.02119 1.01873 1.21562 0.97200 0.92728 1.03812 1.22712 0.92070 0.95569 0.88336 0.91253 1.22412 0.95826 0.81476 1.04102 1.57696 1.65953 1.22855 1.37258 1.04916 0.75675 0.73733 0.74943 1.93490 1.71826 1.63324 1.69460 1.93491 1.71953 1.53096 1.79685 1.30431 1.14599 1.12864 1.13872 1.18811 0.94804 0.94950 0.93066 1.21506 0.93807 1.33539 1.08602 0.90595 1.26098 0.96628 0.96922 1.00457 1.70107 1.12203 1.43064 1.32026 0.85276 0.79149 0.77885 0.78007 1.17900 1.20404 1.20387 1.22365 0.95996 0.97639 0.87990 1.22662 0.91977 0.82309 1.00994 0.84463 1.22594 1.02588 1.01495 0.98951 1.87974 1.79496 1.23586 1.38062 0.91619 0.92994 0.92717 0.90536 0.89155 0.89450 0.88557 0.84213 0.84061 0.97579 0.97615 0.92386 0.88370 0.89332 0.90477 0.90520 0.92613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.81 71.98 0.71 -1.38 16 2 C -0.12 -1.74 5.65 30.60 0.17 -1.57 16 3 C 0.07 1.39 2.40 30.83 0.07 1.46 16 4 H 0.07 1.35 6.25 -2.39 -0.01 1.34 16 5 C 0.09 1.96 5.82 86.49 0.50 2.46 16 6 N -1.00 -26.49 2.79 -510.88 -1.42 -27.91 16 7 S 2.61 95.13 5.42 -56.49 -0.31 94.82 16 8 O -0.99 -41.59 16.81 -127.65 -2.15 -43.74 16 9 O -0.99 -41.84 16.80 -127.65 -2.14 -43.98 16 10 C -0.59 -21.98 5.33 71.98 0.38 -21.60 16 11 C 0.02 1.17 4.98 29.85 0.15 1.32 16 12 C -0.54 -29.27 9.11 25.60 0.23 -29.04 16 13 H 0.08 3.82 7.74 -2.91 -0.02 3.80 16 14 C 0.00 -0.15 5.46 84.66 0.46 0.32 16 15 N -0.93 -56.50 13.29 21.45 0.28 -56.22 16 16 Si 0.97 42.81 29.54 68.60 2.03 44.83 16 17 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 18 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 19 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 20 C 0.09 1.84 5.88 86.35 0.51 2.35 16 21 C 0.08 1.42 3.93 30.70 0.12 1.54 16 22 H 0.14 1.76 8.14 -2.39 -0.02 1.74 16 23 C -0.20 -3.70 8.58 71.98 0.62 -3.08 16 24 O -0.37 -7.35 9.76 -148.98 -1.45 -8.81 16 25 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 27 H 0.05 0.86 7.82 -2.39 -0.02 0.84 16 28 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 29 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.10 2.21 7.22 -2.39 -0.02 2.19 16 32 H 0.14 4.59 8.14 -2.39 -0.02 4.57 16 33 H 0.14 4.64 7.50 -2.39 -0.02 4.62 16 34 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 36 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 37 H 0.10 2.16 7.22 -2.39 -0.02 2.14 16 38 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.05 1.16 4.86 -2.39 -0.01 1.15 16 Total: -1.00 -73.19 337.31 -0.24 -73.43 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 1.00 Total: 14.79 kcal Atomic # 6 Polarization: -51.15 SS G_CDS: 3.93 Total: -47.22 kcal Atomic # 7 Polarization: -82.99 SS G_CDS: -1.14 Total: -84.13 kcal Atomic # 8 Polarization: -90.79 SS G_CDS: -5.75 Total: -96.53 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: 95.13 SS G_CDS: -0.31 Total: 94.82 kcal Total: -73.19 -0.24 -73.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111354301.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.771 kcal (2) G-P(sol) polarization free energy of solvation -73.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds