Wall clock time and date at job start Tue Mar 31 2020 06:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21291 * 119.99864 * 2 1 4 4 N 1.34773 * 120.00092 * 179.97438 * 2 1 3 5 5 C 1.39962 * 119.99749 * 184.50925 * 4 2 1 6 6 C 1.38621 * 119.99736 * 325.26131 * 5 4 2 7 7 C 1.39514 * 119.77153 * 179.72443 * 6 5 4 8 8 C 1.47738 * 120.11605 * 180.24757 * 7 6 5 9 9 O 1.21468 * 120.00133 * 0.30847 * 8 7 6 10 10 O 1.34710 * 120.00197 * 180.30007 * 8 7 6 11 11 C 1.45199 * 117.00482 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.46659 * 329.99529 * 11 10 8 13 13 C 1.52996 * 109.47524 * 89.99439 * 11 10 8 14 14 C 1.50699 * 109.46975 * 210.00370 * 11 10 8 15 15 H 1.08000 * 120.00388 * 359.97438 * 14 11 10 16 16 C 1.37883 * 119.99821 * 180.02562 * 14 11 10 17 17 N 1.31512 * 119.99758 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 119.99871 * 179.97438 * 16 14 11 19 19 H 1.48494 * 109.47292 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47012 * 119.99707 * 18 16 14 21 21 H 1.48499 * 109.46837 * 239.99514 * 18 16 14 22 22 C 1.39662 * 119.76591 * 0.55432 * 7 6 5 23 23 C 1.37974 * 119.99307 * 359.71581 * 22 7 6 24 24 C 1.38263 * 120.22488 * 0.02562 * 23 22 7 25 25 C 1.50694 * 119.87953 * 179.97438 * 24 23 22 26 26 H 1.08995 * 109.47146 * 269.99599 * 1 2 3 27 27 H 1.08999 * 109.47228 * 30.00026 * 1 2 3 28 28 H 1.08998 * 109.47009 * 149.99995 * 1 2 3 29 29 H 0.96999 * 120.00280 * 4.51012 * 4 2 1 30 30 H 1.08001 * 120.11529 * 359.97438 * 6 5 4 31 31 H 1.08995 * 109.47505 * 300.00425 * 13 11 10 32 32 H 1.09001 * 109.47079 * 60.00346 * 13 11 10 33 33 H 1.09004 * 109.47216 * 180.02562 * 13 11 10 34 34 H 0.97001 * 119.99941 * 180.02562 * 17 16 14 35 35 H 1.08005 * 120.00844 * 179.70501 * 22 7 6 36 36 H 1.07998 * 119.88131 * 179.97438 * 23 22 7 37 37 H 1.08992 * 109.47530 * 270.02191 * 25 24 23 38 38 H 1.09010 * 109.47225 * 30.02425 * 25 24 23 39 39 H 1.09008 * 109.47043 * 150.01918 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5773 -1.1689 0.0958 6 6 4.3139 -0.1574 -0.5006 7 6 5.7053 -0.1606 -0.3978 8 6 6.4975 0.9166 -1.0259 9 8 5.9373 1.8103 -1.6284 10 8 7.8412 0.9080 -0.9303 11 6 8.5548 1.9981 -1.5712 12 1 7.9889 2.3437 -2.4363 13 6 8.7237 3.1503 -0.5788 14 6 9.9111 1.5167 -2.0178 15 1 10.2075 0.4939 -1.8377 16 6 10.7743 2.3824 -2.6555 17 7 10.4137 3.6280 -2.8744 18 14 12.4559 1.7858 -3.2086 19 1 12.6174 0.3549 -2.8462 20 1 12.5766 1.9408 -4.6805 21 1 13.5107 2.5879 -2.5382 22 6 6.3469 -1.1893 0.2955 23 6 5.6045 -2.1943 0.8807 24 6 4.2253 -2.1879 0.7832 25 6 3.4222 -3.2898 1.4248 26 1 -0.3633 -0.0001 1.0276 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6982 -2.0060 -0.0652 30 1 3.8123 0.6327 -1.0397 31 1 7.7426 3.4984 -0.2558 32 1 9.2895 2.8046 0.2863 33 1 9.2590 3.9688 -1.0601 34 1 11.0208 4.2369 -3.3234 35 1 7.4241 -1.1983 0.3735 36 1 6.1025 -2.9891 1.4161 37 1 3.2877 -4.1036 0.7124 38 1 3.9503 -3.6599 2.3037 39 1 2.4476 -2.9029 1.7228 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113692282.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:28 Heat of formation + Delta-G solvation = -103.420585 kcal Electronic energy + Delta-G solvation = -22687.389332 eV Core-core repulsion = 19173.915623 eV Total energy + Delta-G solvation = -3513.473708 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.80345 -39.44985 -38.32108 -35.63687 -34.94975 -33.22311 -32.71244 -31.11112 -29.57422 -28.90342 -27.39040 -25.27080 -23.50274 -22.73747 -21.22193 -20.65839 -19.77656 -17.97047 -17.21782 -16.59179 -16.27842 -15.85774 -15.58832 -14.97287 -14.90750 -14.75365 -14.35336 -14.08982 -13.91317 -13.56671 -13.00563 -12.92111 -12.67772 -12.59850 -12.28078 -12.08220 -11.76764 -11.67299 -11.46382 -11.15556 -11.04625 -10.79250 -10.49843 -10.31038 -10.24480 -9.95953 -9.63451 -9.47899 -8.84623 -8.76545 -8.45395 -8.20776 -6.14314 -4.21084 0.86982 1.33754 2.36366 2.81502 3.11333 3.26360 3.32610 3.37643 3.69796 4.02016 4.36122 4.47363 4.67809 4.72025 4.83383 5.02094 5.05262 5.18560 5.25005 5.28651 5.40401 5.45272 5.57484 5.62099 5.71476 5.98962 6.18154 6.33590 6.40565 6.57619 6.71725 6.93928 6.96976 6.98572 7.13642 7.22291 7.64224 7.78216 7.90166 7.98619 8.18657 8.68864 8.93352 9.44033 10.93301 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.025339 B = 0.003535 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.742832 B = 7918.349629 C = 8735.150095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.503 3.497 3 O -0.515 6.515 4 N -0.672 5.672 5 C 0.122 3.878 6 C -0.059 4.059 7 C -0.099 4.099 8 C 0.495 3.505 9 O -0.512 6.512 10 O -0.351 6.351 11 C 0.215 3.785 12 H 0.047 0.953 13 C -0.155 4.155 14 C -0.519 4.519 15 H 0.070 0.930 16 C 0.061 3.939 17 N -0.889 5.889 18 Si 0.912 3.088 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.281 1.281 22 C -0.071 4.071 23 C -0.118 4.118 24 C -0.090 4.090 25 C -0.115 4.115 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.081 0.919 29 H 0.410 0.590 30 H 0.153 0.847 31 H 0.017 0.983 32 H 0.037 0.963 33 H 0.099 0.901 34 H 0.265 0.735 35 H 0.144 0.856 36 H 0.133 0.867 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.164 -14.986 8.455 25.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.291 3.709 3 O -0.389 6.389 4 N -0.318 5.318 5 C 0.029 3.971 6 C -0.079 4.079 7 C -0.101 4.101 8 C 0.339 3.661 9 O -0.403 6.403 10 O -0.267 6.267 11 C 0.163 3.837 12 H 0.065 0.935 13 C -0.213 4.213 14 C -0.557 4.557 15 H 0.088 0.912 16 C -0.141 4.141 17 N -0.527 5.527 18 Si 0.739 3.261 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.207 1.207 22 C -0.090 4.090 23 C -0.136 4.136 24 C -0.092 4.092 25 C -0.172 4.172 26 H 0.115 0.885 27 H 0.116 0.884 28 H 0.100 0.900 29 H 0.246 0.754 30 H 0.170 0.830 31 H 0.036 0.964 32 H 0.056 0.944 33 H 0.118 0.882 34 H 0.075 0.925 35 H 0.162 0.838 36 H 0.151 0.849 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.848 -13.726 8.191 23.960 hybrid contribution 0.630 -0.457 -0.388 0.870 sum -17.218 -14.183 7.803 23.633 Atomic orbital electron populations 1.21877 0.90660 1.05284 1.05045 1.21082 0.90950 0.83271 0.75588 1.90829 1.70206 1.31153 1.46753 1.43545 1.04914 1.09844 1.73532 1.17313 0.82581 0.97326 0.99896 1.21377 0.92071 0.98224 0.96268 1.19298 0.92678 0.96024 1.02072 1.20957 0.83143 0.84242 0.77795 1.90777 1.72510 1.36826 1.40174 1.86522 1.17116 1.52512 1.70552 1.20665 0.90418 0.81200 0.91453 0.93499 1.22163 0.98728 1.01246 0.99162 1.21064 0.98263 0.98231 1.38153 0.91215 1.24899 0.99008 0.94734 0.95425 1.69918 1.36655 1.04406 1.41689 0.86214 0.82634 0.78971 0.78282 1.19469 1.20775 1.20740 1.21580 1.01359 0.91980 0.94040 1.20825 0.92267 0.99321 1.01233 1.19850 0.94518 0.96897 0.97944 1.20770 0.99480 0.96258 1.00671 0.88519 0.88391 0.89992 0.75399 0.82955 0.96428 0.94400 0.88213 0.92471 0.83836 0.84936 0.90853 0.90798 0.91748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 10.31 36.01 0.37 -0.59 16 2 C 0.50 5.57 7.78 -10.99 -0.09 5.48 16 3 O -0.52 -8.69 14.51 5.55 0.08 -8.60 16 4 N -0.67 -6.41 4.75 -9.89 -0.05 -6.46 16 5 C 0.12 1.60 6.28 -83.74 -0.53 1.08 16 6 C -0.06 -1.03 8.24 -38.96 -0.32 -1.35 16 7 C -0.10 -1.86 5.87 -105.01 -0.62 -2.48 16 8 C 0.49 11.68 7.87 34.61 0.27 11.95 16 9 O -0.51 -13.56 15.60 -19.24 -0.30 -13.86 16 10 O -0.35 -8.85 9.11 -40.52 -0.37 -9.22 16 11 C 0.21 6.05 2.56 -27.89 -0.07 5.98 16 12 H 0.05 1.45 7.16 -51.93 -0.37 1.08 16 13 C -0.16 -4.15 9.33 37.16 0.35 -3.80 16 14 C -0.52 -14.95 8.90 -34.44 -0.31 -15.26 16 15 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 16 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 17 N -0.89 -25.89 11.32 55.43 0.63 -25.27 16 18 Si 0.91 21.43 29.54 -169.99 -5.02 16.41 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 C -0.07 -1.09 9.61 -39.15 -0.38 -1.46 16 23 C -0.12 -1.39 9.67 -39.67 -0.38 -1.77 16 24 C -0.09 -0.98 5.90 -104.35 -0.62 -1.59 16 25 C -0.12 -0.75 9.46 36.00 0.34 -0.41 16 26 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.41 2.19 7.82 -40.82 -0.32 1.87 16 30 H 0.15 3.02 5.79 -52.49 -0.30 2.72 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.10 2.81 6.07 -51.93 -0.32 2.49 16 34 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.14 2.18 7.61 -52.48 -0.40 1.78 16 36 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.42 8.08 -51.92 -0.42 0.00 16 39 H 0.06 0.35 7.15 -51.92 -0.37 -0.02 16 LS Contribution 335.95 15.07 5.06 5.06 Total: -1.00 -36.00 335.95 -7.04 -43.04 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -5.00 Total: 1.50 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -2.07 Total: -2.60 kcal Atomic # 7 Polarization: -32.30 SS G_CDS: 0.58 Total: -31.72 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -0.59 Total: -31.68 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -36.00 -7.04 -43.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113692282.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.384 kcal (2) G-P(sol) polarization free energy of solvation -35.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds