Wall clock time and date at job start Tue Mar 31 2020 06:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21291 * 119.99864 * 2 1 4 4 N 1.34773 * 120.00092 * 179.97438 * 2 1 3 5 5 C 1.39962 * 119.99749 * 184.50925 * 4 2 1 6 6 C 1.38621 * 119.99736 * 325.26131 * 5 4 2 7 7 C 1.39514 * 119.77153 * 179.72443 * 6 5 4 8 8 C 1.47738 * 120.11605 * 180.24757 * 7 6 5 9 9 O 1.21468 * 120.00133 * 0.30847 * 8 7 6 10 10 O 1.34710 * 120.00197 * 180.30007 * 8 7 6 11 11 C 1.45199 * 117.00482 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.46659 * 329.99529 * 11 10 8 13 13 C 1.52996 * 109.47524 * 89.99439 * 11 10 8 14 14 C 1.50699 * 109.46975 * 210.00370 * 11 10 8 15 15 H 1.08000 * 120.00388 * 359.97438 * 14 11 10 16 16 C 1.37883 * 119.99821 * 180.02562 * 14 11 10 17 17 N 1.31512 * 119.99758 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 119.99871 * 179.97438 * 16 14 11 19 19 H 1.48494 * 109.47292 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47012 * 119.99707 * 18 16 14 21 21 H 1.48499 * 109.46837 * 239.99514 * 18 16 14 22 22 C 1.39662 * 119.76591 * 0.55432 * 7 6 5 23 23 C 1.37974 * 119.99307 * 359.71581 * 22 7 6 24 24 C 1.38263 * 120.22488 * 0.02562 * 23 22 7 25 25 C 1.50694 * 119.87953 * 179.97438 * 24 23 22 26 26 H 1.08995 * 109.47146 * 269.99599 * 1 2 3 27 27 H 1.08999 * 109.47228 * 30.00026 * 1 2 3 28 28 H 1.08998 * 109.47009 * 149.99995 * 1 2 3 29 29 H 0.96999 * 120.00280 * 4.51012 * 4 2 1 30 30 H 1.08001 * 120.11529 * 359.97438 * 6 5 4 31 31 H 1.08995 * 109.47505 * 300.00425 * 13 11 10 32 32 H 1.09001 * 109.47079 * 60.00346 * 13 11 10 33 33 H 1.09004 * 109.47216 * 180.02562 * 13 11 10 34 34 H 0.97001 * 119.99941 * 180.02562 * 17 16 14 35 35 H 1.08005 * 120.00844 * 179.70501 * 22 7 6 36 36 H 1.07998 * 119.88131 * 179.97438 * 23 22 7 37 37 H 1.08992 * 109.47530 * 270.02191 * 25 24 23 38 38 H 1.09010 * 109.47225 * 30.02425 * 25 24 23 39 39 H 1.09008 * 109.47043 * 150.01918 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5773 -1.1689 0.0958 6 6 4.3139 -0.1574 -0.5006 7 6 5.7053 -0.1606 -0.3978 8 6 6.4975 0.9166 -1.0259 9 8 5.9373 1.8103 -1.6284 10 8 7.8412 0.9080 -0.9303 11 6 8.5548 1.9981 -1.5712 12 1 7.9889 2.3437 -2.4363 13 6 8.7237 3.1503 -0.5788 14 6 9.9111 1.5167 -2.0178 15 1 10.2075 0.4939 -1.8377 16 6 10.7743 2.3824 -2.6555 17 7 10.4137 3.6280 -2.8744 18 14 12.4559 1.7858 -3.2086 19 1 12.6174 0.3549 -2.8462 20 1 12.5766 1.9408 -4.6805 21 1 13.5107 2.5879 -2.5382 22 6 6.3469 -1.1893 0.2955 23 6 5.6045 -2.1943 0.8807 24 6 4.2253 -2.1879 0.7832 25 6 3.4222 -3.2898 1.4248 26 1 -0.3633 -0.0001 1.0276 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6982 -2.0060 -0.0652 30 1 3.8123 0.6327 -1.0397 31 1 7.7426 3.4984 -0.2558 32 1 9.2895 2.8046 0.2863 33 1 9.2590 3.9688 -1.0601 34 1 11.0208 4.2369 -3.3234 35 1 7.4241 -1.1983 0.3735 36 1 6.1025 -2.9891 1.4161 37 1 3.2877 -4.1036 0.7124 38 1 3.9503 -3.6599 2.3037 39 1 2.4476 -2.9029 1.7228 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113692282.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:27 Heat of formation + Delta-G solvation = -127.756007 kcal Electronic energy + Delta-G solvation = -22688.444595 eV Core-core repulsion = 19173.915623 eV Total energy + Delta-G solvation = -3514.528971 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.91431 -41.14601 -39.52661 -37.64391 -36.04240 -35.35243 -33.76962 -32.02166 -31.66581 -29.72908 -28.44824 -27.50251 -24.85074 -23.95486 -22.89157 -21.63224 -21.43336 -19.53510 -18.63743 -18.25087 -17.79385 -17.20793 -16.86578 -16.77408 -16.49525 -16.07920 -15.66097 -15.13256 -14.83834 -14.68559 -14.56167 -14.33704 -14.00544 -13.47791 -13.31441 -13.22909 -13.15905 -13.07338 -12.89872 -12.84525 -12.73864 -12.46969 -12.41295 -12.15134 -11.69777 -11.63077 -11.44395 -11.04329 -10.97087 -10.64555 -9.89795 -9.25576 -8.31413 -6.49462 -0.39158 0.20446 1.37862 1.40620 1.42653 1.56342 1.64450 1.82405 2.10995 2.39875 2.70287 2.99116 3.67574 3.73589 3.84160 3.92120 4.12363 4.23430 4.37744 4.45649 4.51389 4.64742 4.71452 4.72484 4.75048 4.79286 4.89093 4.99683 5.08779 5.16802 5.22720 5.32282 5.33579 5.40773 5.43576 5.54812 5.83365 5.87329 5.99236 6.38447 6.55623 6.85910 7.11720 7.21956 8.77363 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.025339 B = 0.003535 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.742832 B = 7918.349629 C = 8735.150095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.495 3.505 3 O -0.584 6.584 4 N -0.653 5.653 5 C 0.121 3.879 6 C -0.081 4.081 7 C -0.136 4.136 8 C 0.488 3.512 9 O -0.558 6.558 10 O -0.351 6.351 11 C 0.216 3.784 12 H 0.003 0.997 13 C -0.142 4.142 14 C -0.547 4.547 15 H 0.072 0.928 16 C 0.013 3.987 17 N -0.920 5.920 18 Si 0.991 3.009 19 H -0.260 1.260 20 H -0.275 1.275 21 H -0.270 1.270 22 C -0.074 4.074 23 C -0.106 4.106 24 C -0.062 4.062 25 C -0.115 4.115 26 H 0.120 0.880 27 H 0.090 0.910 28 H 0.120 0.880 29 H 0.434 0.566 30 H 0.115 0.885 31 H 0.015 0.985 32 H 0.050 0.950 33 H 0.084 0.916 34 H 0.272 0.728 35 H 0.140 0.860 36 H 0.178 0.822 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.024 -19.203 10.219 28.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.286 3.714 3 O -0.463 6.463 4 N -0.302 5.302 5 C 0.026 3.974 6 C -0.101 4.101 7 C -0.138 4.138 8 C 0.336 3.664 9 O -0.451 6.451 10 O -0.267 6.267 11 C 0.163 3.837 12 H 0.021 0.979 13 C -0.200 4.200 14 C -0.585 4.585 15 H 0.090 0.910 16 C -0.186 4.186 17 N -0.557 5.557 18 Si 0.813 3.187 19 H -0.184 1.184 20 H -0.201 1.201 21 H -0.195 1.195 22 C -0.093 4.093 23 C -0.123 4.123 24 C -0.065 4.065 25 C -0.171 4.171 26 H 0.138 0.862 27 H 0.109 0.891 28 H 0.139 0.861 29 H 0.275 0.725 30 H 0.133 0.867 31 H 0.035 0.965 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.158 0.842 36 H 0.195 0.805 37 H 0.119 0.881 38 H 0.112 0.888 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -18.758 -18.009 9.972 27.850 hybrid contribution 0.732 0.773 -0.891 1.389 sum -18.026 -17.236 9.081 26.541 Atomic orbital electron populations 1.21923 0.85911 1.06843 1.06949 1.22198 0.93123 0.82421 0.73667 1.90825 1.71928 1.33695 1.49867 1.43494 1.03431 1.10864 1.72409 1.17424 0.84211 0.96531 0.99233 1.21187 0.91754 0.99308 0.97892 1.19081 0.92808 0.96473 1.05427 1.21985 0.82463 0.85003 0.76988 1.90732 1.72838 1.39044 1.42500 1.86509 1.18369 1.51468 1.70388 1.20432 0.90279 0.82455 0.90581 0.97924 1.21996 0.98556 1.00370 0.99059 1.21312 0.98696 0.98713 1.39732 0.90992 1.25948 1.03321 0.94642 0.94732 1.70045 1.38353 1.05660 1.41679 0.85026 0.76854 0.78949 0.77887 1.18363 1.20090 1.19481 1.21655 1.01546 0.92072 0.94046 1.21307 0.92648 0.98652 0.99741 1.20436 0.94644 0.96437 0.94955 1.20966 0.99586 0.94966 1.01608 0.86189 0.89114 0.86139 0.72452 0.86685 0.96542 0.93102 0.89706 0.91899 0.84167 0.80479 0.88096 0.88813 0.90065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 10.31 71.24 0.73 -0.65 16 2 C 0.49 10.68 7.78 87.66 0.68 11.36 16 3 O -0.58 -21.05 14.51 -3.06 -0.04 -21.09 16 4 N -0.65 -11.07 4.75 -303.60 -1.44 -12.51 16 5 C 0.12 3.03 6.28 38.11 0.24 3.27 16 6 C -0.08 -3.00 8.24 22.67 0.19 -2.82 16 7 C -0.14 -5.47 5.87 -20.11 -0.12 -5.59 16 8 C 0.49 25.20 7.87 70.33 0.55 25.75 16 9 O -0.56 -32.78 15.60 19.94 0.31 -32.47 16 10 O -0.35 -18.99 9.11 -56.19 -0.51 -19.50 16 11 C 0.22 12.95 2.56 29.85 0.08 13.03 16 12 H 0.00 0.20 7.16 -2.39 -0.02 0.18 16 13 C -0.14 -8.02 9.33 71.98 0.67 -7.35 16 14 C -0.55 -32.63 8.90 25.60 0.23 -32.41 16 15 H 0.07 4.15 7.81 -2.91 -0.02 4.13 16 16 C 0.01 0.74 5.30 84.66 0.45 1.19 16 17 N -0.92 -55.17 11.32 21.45 0.24 -54.93 16 18 Si 0.99 44.10 29.54 68.60 2.03 46.13 16 19 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 20 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 21 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 22 C -0.07 -2.28 9.61 22.55 0.22 -2.06 16 23 C -0.11 -2.13 9.67 22.21 0.21 -1.92 16 24 C -0.06 -1.12 5.90 -19.69 -0.12 -1.24 16 25 C -0.12 -0.78 9.46 71.23 0.67 -0.10 16 26 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.43 2.79 7.82 -92.71 -0.73 2.07 16 30 H 0.12 5.13 5.79 -2.91 -0.02 5.11 16 31 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.05 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.08 5.03 6.07 -2.38 -0.01 5.02 16 34 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 35 H 0.14 4.30 7.61 -2.91 -0.02 4.28 16 36 H 0.18 2.07 8.06 -2.91 -0.02 2.04 16 37 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.09 0.41 8.08 -2.38 -0.02 0.39 16 39 H 0.08 0.36 7.15 -2.38 -0.02 0.34 16 Total: -1.00 -88.57 335.95 5.63 -82.94 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: 0.36 Total: 10.98 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 4.69 Total: 0.46 kcal Atomic # 7 Polarization: -66.24 SS G_CDS: -1.20 Total: -67.44 kcal Atomic # 8 Polarization: -72.82 SS G_CDS: -0.25 Total: -73.06 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -88.57 5.63 -82.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113692282.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.818 kcal (2) G-P(sol) polarization free energy of solvation -88.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds