Wall clock time and date at job start Tue Mar 31 2020 06:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21288 * 120.00068 * 2 1 4 4 N 1.34780 * 120.00155 * 180.02562 * 2 1 3 5 5 C 1.39954 * 119.99843 * 185.52190 * 4 2 1 6 6 C 1.38620 * 120.00084 * 24.85130 * 5 4 2 7 7 C 1.39508 * 119.77349 * 180.25371 * 6 5 4 8 8 C 1.47741 * 120.11565 * 179.72833 * 7 6 5 9 9 O 1.21467 * 120.00406 * 359.72190 * 8 7 6 10 10 O 1.34718 * 120.00145 * 179.72550 * 8 7 6 11 11 C 1.45194 * 117.00225 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.47289 * 29.99898 * 11 10 8 13 13 C 1.53001 * 109.47239 * 270.00322 * 11 10 8 14 14 C 1.50699 * 109.47384 * 150.00008 * 11 10 8 15 15 H 1.08006 * 119.99543 * 0.02562 * 14 11 10 16 16 C 1.37874 * 120.00156 * 180.02562 * 14 11 10 17 17 N 1.31512 * 119.99963 * 359.97438 * 16 14 11 18 18 Si 1.86806 * 119.99856 * 180.02562 * 16 14 11 19 19 H 1.48493 * 109.46955 * 59.99965 * 18 16 14 20 20 H 1.48504 * 109.46930 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46939 * 299.99677 * 18 16 14 22 22 C 1.39666 * 119.76918 * 359.45253 * 7 6 5 23 23 C 1.37965 * 119.98878 * 0.27242 * 22 7 6 24 24 C 1.38262 * 120.22636 * 0.02562 * 23 22 7 25 25 C 1.50701 * 119.88299 * 179.97438 * 24 23 22 26 26 H 1.08997 * 109.46813 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47028 * 299.99669 * 1 2 3 28 28 H 1.09000 * 109.47176 * 59.99848 * 1 2 3 29 29 H 0.96995 * 119.99427 * 5.51630 * 4 2 1 30 30 H 1.07998 * 120.11525 * 359.97438 * 6 5 4 31 31 H 1.09000 * 109.47076 * 180.02562 * 13 11 10 32 32 H 1.09001 * 109.47386 * 59.99692 * 13 11 10 33 33 H 1.09005 * 109.46943 * 299.99982 * 13 11 10 34 34 H 0.97007 * 119.99582 * 179.97438 * 17 16 14 35 35 H 1.07997 * 120.00616 * 180.29582 * 22 7 6 36 36 H 1.08001 * 119.88701 * 180.02562 * 23 22 7 37 37 H 1.09002 * 109.47016 * 89.99622 * 25 24 23 38 38 H 1.08999 * 109.47779 * 210.00449 * 25 24 23 39 39 H 1.09004 * 109.47176 * 330.00091 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.5757 -1.1700 0.1161 6 6 4.2221 -0.1078 0.7289 7 6 5.6129 -0.1130 0.8379 8 6 6.3100 1.0179 1.4842 9 8 5.6726 1.9568 1.9174 10 8 7.6527 1.0079 1.5932 11 6 8.2702 2.1523 2.2391 12 1 7.5834 2.5677 2.9765 13 6 8.5956 3.2165 1.1891 14 6 9.5402 1.7178 2.9242 15 1 9.8523 0.6848 2.8783 16 6 10.3037 2.6388 3.6095 17 7 9.9240 3.8967 3.6649 18 14 11.8784 2.1002 4.4581 19 1 12.8141 1.5354 3.4529 20 1 12.5098 3.2707 5.1188 21 1 11.5631 1.0667 5.4767 22 6 6.3435 -1.1938 0.3390 23 6 5.6898 -2.2485 -0.2640 24 6 4.3119 -2.2402 -0.3774 25 6 3.6058 -3.3961 -1.0380 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6993 -2.0052 -0.0817 30 1 3.6513 0.7230 1.1167 31 1 9.0596 4.0754 1.6739 32 1 7.6770 3.5308 0.6935 33 1 9.2824 2.8011 0.4515 34 1 10.4610 4.5446 4.1474 35 1 7.4200 -1.2040 0.4256 36 1 6.2564 -3.0836 -0.6489 37 1 3.3580 -4.1471 -0.2879 38 1 2.6911 -3.0403 -1.5120 39 1 4.2579 -3.8371 -1.7920 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113692284.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:30 Heat of formation + Delta-G solvation = -101.234696 kcal Electronic energy + Delta-G solvation = -22702.011798 eV Core-core repulsion = 19188.632877 eV Total energy + Delta-G solvation = -3513.378921 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.85284 -39.44579 -38.32040 -35.63526 -34.97414 -33.21792 -32.70570 -31.13372 -29.57056 -28.88794 -27.40208 -25.26428 -23.53392 -22.73503 -21.23890 -20.63373 -19.78932 -17.97257 -17.22983 -16.57275 -16.25857 -15.89625 -15.55704 -14.97109 -14.90000 -14.74962 -14.33650 -14.09440 -13.96372 -13.54976 -13.02475 -12.92836 -12.68173 -12.60778 -12.27898 -12.09163 -11.76842 -11.65310 -11.48440 -11.16072 -11.01611 -10.80493 -10.61058 -10.33982 -10.23661 -9.90322 -9.62792 -9.46932 -8.85740 -8.75798 -8.44191 -8.12517 -6.13559 -4.20587 0.87595 1.33803 2.36726 2.79871 3.13890 3.29492 3.32479 3.35002 3.69604 4.04003 4.35998 4.45245 4.67577 4.71270 4.77930 5.03838 5.05742 5.19075 5.25165 5.27865 5.39391 5.45699 5.57912 5.60141 5.71479 5.99940 6.15533 6.34000 6.41634 6.59465 6.72174 6.95003 6.97568 6.99069 7.14094 7.22810 7.64312 7.78735 7.87602 7.99063 8.19215 8.69323 8.93475 9.44437 10.93940 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.024707 B = 0.003563 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.017350 B = 7856.692121 C = 8682.359989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.502 3.498 3 O -0.513 6.513 4 N -0.669 5.669 5 C 0.127 3.873 6 C -0.070 4.070 7 C -0.095 4.095 8 C 0.495 3.505 9 O -0.512 6.512 10 O -0.351 6.351 11 C 0.216 3.784 12 H 0.047 0.953 13 C -0.155 4.155 14 C -0.521 4.521 15 H 0.069 0.931 16 C 0.062 3.938 17 N -0.889 5.889 18 Si 0.913 3.087 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.075 4.075 23 C -0.115 4.115 24 C -0.096 4.096 25 C -0.115 4.115 26 H 0.077 0.923 27 H 0.100 0.900 28 H 0.098 0.902 29 H 0.410 0.590 30 H 0.159 0.841 31 H 0.099 0.901 32 H 0.017 0.983 33 H 0.037 0.963 34 H 0.267 0.733 35 H 0.143 0.857 36 H 0.133 0.867 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.904 -15.610 -9.524 24.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.291 3.709 3 O -0.387 6.387 4 N -0.315 5.315 5 C 0.033 3.967 6 C -0.090 4.090 7 C -0.097 4.097 8 C 0.338 3.662 9 O -0.402 6.402 10 O -0.267 6.267 11 C 0.163 3.837 12 H 0.065 0.935 13 C -0.213 4.213 14 C -0.559 4.559 15 H 0.087 0.913 16 C -0.140 4.140 17 N -0.527 5.527 18 Si 0.740 3.260 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.094 4.094 23 C -0.133 4.133 24 C -0.099 4.099 25 C -0.172 4.172 26 H 0.096 0.904 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.247 0.753 30 H 0.176 0.824 31 H 0.118 0.882 32 H 0.036 0.964 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.161 0.839 36 H 0.150 0.850 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.633 -14.324 -9.287 23.835 hybrid contribution 0.570 -0.464 0.441 0.857 sum -16.063 -14.788 -8.846 23.557 Atomic orbital electron populations 1.21855 0.90627 1.04389 1.05875 1.21093 0.90995 0.83237 0.75625 1.90808 1.70033 1.31225 1.46669 1.43644 1.05176 1.09924 1.72773 1.17357 0.82709 0.96304 1.00280 1.21475 0.93255 0.98662 0.95636 1.19296 0.92957 0.94949 1.02527 1.20962 0.82914 0.85347 0.76933 1.90777 1.67873 1.35813 1.45773 1.86524 1.18657 1.49492 1.72035 1.20652 0.92337 0.79971 0.90716 0.93505 1.22166 0.98662 1.01837 0.98630 1.20987 1.05978 0.96229 1.32675 0.91321 1.24891 0.98378 0.94694 0.96039 1.69901 1.39003 1.01943 1.41843 0.86322 0.82168 0.78023 0.79531 1.19945 1.21058 1.19992 1.21563 1.01275 0.91773 0.94819 1.20807 0.92755 0.99002 1.00741 1.19770 0.94044 0.96185 0.99881 1.20763 1.00334 0.95728 1.00338 0.90439 0.88149 0.88348 0.75345 0.82397 0.88220 0.96427 0.94409 0.92358 0.83874 0.84954 0.90847 0.91877 0.90725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 10.39 36.01 0.37 -0.59 16 2 C 0.50 5.57 7.74 -10.98 -0.09 5.49 16 3 O -0.51 -8.63 14.26 5.55 0.08 -8.55 16 4 N -0.67 -6.43 4.97 -9.89 -0.05 -6.48 16 5 C 0.13 1.68 6.40 -83.74 -0.54 1.15 16 6 C -0.07 -1.23 8.26 -38.97 -0.32 -1.55 16 7 C -0.10 -1.80 5.87 -105.01 -0.62 -2.42 16 8 C 0.49 11.71 7.87 34.61 0.27 11.98 16 9 O -0.51 -13.58 15.60 -19.24 -0.30 -13.88 16 10 O -0.35 -8.87 9.11 -40.54 -0.37 -9.24 16 11 C 0.22 6.08 2.56 -27.88 -0.07 6.01 16 12 H 0.05 1.46 7.16 -51.93 -0.37 1.08 16 13 C -0.16 -4.15 9.33 37.16 0.35 -3.80 16 14 C -0.52 -15.02 8.90 -34.44 -0.31 -15.33 16 15 H 0.07 1.93 7.81 -52.48 -0.41 1.52 16 16 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 17 N -0.89 -25.94 11.32 55.43 0.63 -25.31 16 18 Si 0.91 21.46 29.54 -169.99 -5.02 16.44 16 19 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 C -0.08 -1.17 9.61 -39.15 -0.38 -1.54 16 23 C -0.11 -1.36 9.67 -39.67 -0.38 -1.74 16 24 C -0.10 -1.05 5.90 -104.35 -0.62 -1.67 16 25 C -0.11 -0.75 9.44 36.01 0.34 -0.41 16 26 H 0.08 0.20 7.92 -51.93 -0.41 -0.21 16 27 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.41 2.21 7.22 -40.82 -0.29 1.91 16 30 H 0.16 3.15 5.38 -52.49 -0.28 2.87 16 31 H 0.10 2.81 6.07 -51.93 -0.32 2.49 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.27 7.31 8.31 -40.82 -0.34 6.98 16 35 H 0.14 2.19 7.61 -52.49 -0.40 1.79 16 36 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.33 6.97 -51.93 -0.36 -0.03 16 39 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 LS Contribution 334.68 15.07 5.04 5.04 Total: -1.00 -35.97 334.68 -7.00 -42.97 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -4.94 Total: 1.79 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -2.08 Total: -2.78 kcal Atomic # 7 Polarization: -32.37 SS G_CDS: 0.58 Total: -31.79 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -0.59 Total: -31.67 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.97 -7.00 -42.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113692284.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.267 kcal (2) G-P(sol) polarization free energy of solvation -35.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds