Wall clock time and date at job start Tue Mar 31 2020 06:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21288 * 120.00068 * 2 1 4 4 N 1.34780 * 120.00155 * 180.02562 * 2 1 3 5 5 C 1.39954 * 119.99843 * 185.52190 * 4 2 1 6 6 C 1.38620 * 120.00084 * 24.85130 * 5 4 2 7 7 C 1.39508 * 119.77349 * 180.25371 * 6 5 4 8 8 C 1.47741 * 120.11565 * 179.72833 * 7 6 5 9 9 O 1.21467 * 120.00406 * 359.72190 * 8 7 6 10 10 O 1.34718 * 120.00145 * 179.72550 * 8 7 6 11 11 C 1.45194 * 117.00225 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.47289 * 29.99898 * 11 10 8 13 13 C 1.53001 * 109.47239 * 270.00322 * 11 10 8 14 14 C 1.50699 * 109.47384 * 150.00008 * 11 10 8 15 15 H 1.08006 * 119.99543 * 0.02562 * 14 11 10 16 16 C 1.37874 * 120.00156 * 180.02562 * 14 11 10 17 17 N 1.31512 * 119.99963 * 359.97438 * 16 14 11 18 18 Si 1.86806 * 119.99856 * 180.02562 * 16 14 11 19 19 H 1.48493 * 109.46955 * 59.99965 * 18 16 14 20 20 H 1.48504 * 109.46930 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46939 * 299.99677 * 18 16 14 22 22 C 1.39666 * 119.76918 * 359.45253 * 7 6 5 23 23 C 1.37965 * 119.98878 * 0.27242 * 22 7 6 24 24 C 1.38262 * 120.22636 * 0.02562 * 23 22 7 25 25 C 1.50701 * 119.88299 * 179.97438 * 24 23 22 26 26 H 1.08997 * 109.46813 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47028 * 299.99669 * 1 2 3 28 28 H 1.09000 * 109.47176 * 59.99848 * 1 2 3 29 29 H 0.96995 * 119.99427 * 5.51630 * 4 2 1 30 30 H 1.07998 * 120.11525 * 359.97438 * 6 5 4 31 31 H 1.09000 * 109.47076 * 180.02562 * 13 11 10 32 32 H 1.09001 * 109.47386 * 59.99692 * 13 11 10 33 33 H 1.09005 * 109.46943 * 299.99982 * 13 11 10 34 34 H 0.97007 * 119.99582 * 179.97438 * 17 16 14 35 35 H 1.07997 * 120.00616 * 180.29582 * 22 7 6 36 36 H 1.08001 * 119.88701 * 180.02562 * 23 22 7 37 37 H 1.09002 * 109.47016 * 89.99622 * 25 24 23 38 38 H 1.08999 * 109.47779 * 210.00449 * 25 24 23 39 39 H 1.09004 * 109.47176 * 330.00091 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.5757 -1.1700 0.1161 6 6 4.2221 -0.1078 0.7289 7 6 5.6129 -0.1130 0.8379 8 6 6.3100 1.0179 1.4842 9 8 5.6726 1.9568 1.9174 10 8 7.6527 1.0079 1.5932 11 6 8.2702 2.1523 2.2391 12 1 7.5834 2.5677 2.9765 13 6 8.5956 3.2165 1.1891 14 6 9.5402 1.7178 2.9242 15 1 9.8523 0.6848 2.8783 16 6 10.3037 2.6388 3.6095 17 7 9.9240 3.8967 3.6649 18 14 11.8784 2.1002 4.4581 19 1 12.8141 1.5354 3.4529 20 1 12.5098 3.2707 5.1188 21 1 11.5631 1.0667 5.4767 22 6 6.3435 -1.1938 0.3390 23 6 5.6898 -2.2485 -0.2640 24 6 4.3119 -2.2402 -0.3774 25 6 3.6058 -3.3961 -1.0380 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6993 -2.0052 -0.0817 30 1 3.6513 0.7230 1.1167 31 1 9.0596 4.0754 1.6739 32 1 7.6770 3.5308 0.6935 33 1 9.2824 2.8011 0.4515 34 1 10.4610 4.5446 4.1474 35 1 7.4200 -1.2040 0.4256 36 1 6.2564 -3.0836 -0.6489 37 1 3.3580 -4.1471 -0.2879 38 1 2.6911 -3.0403 -1.5120 39 1 4.2579 -3.8371 -1.7920 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113692284.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:30 Heat of formation + Delta-G solvation = -125.569396 kcal Electronic energy + Delta-G solvation = -22703.067029 eV Core-core repulsion = 19188.632877 eV Total energy + Delta-G solvation = -3514.434153 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.95198 -41.15967 -39.52666 -37.64236 -36.07260 -35.35131 -33.76311 -32.04163 -31.66871 -29.71915 -28.46358 -27.49802 -24.86588 -23.97443 -22.89859 -21.60853 -21.45925 -19.54393 -18.63250 -18.26503 -17.78141 -17.22265 -16.87204 -16.76564 -16.46587 -16.09395 -15.64656 -15.15268 -14.84386 -14.74446 -14.52356 -14.33707 -13.99677 -13.46764 -13.31135 -13.23467 -13.19446 -13.07120 -12.91679 -12.84094 -12.71744 -12.47495 -12.41137 -12.18127 -11.75212 -11.65257 -11.49593 -11.05925 -10.92595 -10.63221 -9.89395 -9.17443 -8.30898 -6.49281 -0.38834 0.20370 1.36072 1.40415 1.45887 1.53658 1.66840 1.82122 2.08954 2.40047 2.72420 2.99468 3.66957 3.70944 3.85233 3.92323 4.13784 4.21768 4.37069 4.45511 4.50166 4.62626 4.70885 4.71955 4.75264 4.80190 4.88696 4.99324 5.07361 5.15759 5.21912 5.31682 5.35123 5.40342 5.43372 5.54956 5.83458 5.87543 5.99525 6.37767 6.55385 6.86166 7.08645 7.22103 8.77413 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.024707 B = 0.003563 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.017350 B = 7856.692121 C = 8682.359989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.494 3.506 3 O -0.580 6.580 4 N -0.651 5.651 5 C 0.125 3.875 6 C -0.093 4.093 7 C -0.133 4.133 8 C 0.488 3.512 9 O -0.557 6.557 10 O -0.351 6.351 11 C 0.216 3.784 12 H 0.003 0.997 13 C -0.142 4.142 14 C -0.550 4.550 15 H 0.072 0.928 16 C 0.014 3.986 17 N -0.920 5.920 18 Si 0.990 3.010 19 H -0.260 1.260 20 H -0.277 1.277 21 H -0.267 1.267 22 C -0.079 4.079 23 C -0.102 4.102 24 C -0.069 4.069 25 C -0.115 4.115 26 H 0.120 0.880 27 H 0.102 0.898 28 H 0.108 0.892 29 H 0.434 0.566 30 H 0.122 0.878 31 H 0.084 0.916 32 H 0.016 0.984 33 H 0.050 0.950 34 H 0.272 0.728 35 H 0.140 0.860 36 H 0.178 0.822 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.527 -19.954 -10.998 28.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.285 3.715 3 O -0.459 6.459 4 N -0.299 5.299 5 C 0.030 3.970 6 C -0.113 4.113 7 C -0.135 4.135 8 C 0.335 3.665 9 O -0.451 6.451 10 O -0.267 6.267 11 C 0.163 3.837 12 H 0.021 0.979 13 C -0.200 4.200 14 C -0.587 4.587 15 H 0.090 0.910 16 C -0.186 4.186 17 N -0.557 5.557 18 Si 0.812 3.188 19 H -0.185 1.185 20 H -0.202 1.202 21 H -0.192 1.192 22 C -0.098 4.098 23 C -0.120 4.120 24 C -0.071 4.071 25 C -0.171 4.171 26 H 0.138 0.862 27 H 0.120 0.880 28 H 0.127 0.873 29 H 0.276 0.724 30 H 0.140 0.860 31 H 0.103 0.897 32 H 0.035 0.965 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.158 0.842 36 H 0.195 0.805 37 H 0.119 0.881 38 H 0.099 0.901 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.304 -18.735 -10.785 27.691 hybrid contribution 0.607 0.799 0.834 1.304 sum -16.697 -17.937 -9.952 26.449 Atomic orbital electron populations 1.21909 0.85945 1.07401 1.06349 1.22199 0.93155 0.82417 0.73724 1.90804 1.71757 1.33731 1.49654 1.43592 1.03740 1.10936 1.71611 1.17460 0.84593 0.95536 0.99372 1.21284 0.92653 0.99691 0.97690 1.19079 0.93522 0.94932 1.05933 1.21990 0.82058 0.86352 0.76058 1.90732 1.68256 1.38011 1.48058 1.86510 1.20001 1.48282 1.71950 1.20421 0.91679 0.81156 0.90450 0.97940 1.21997 0.98652 1.00987 0.98331 1.21257 1.06502 0.96774 1.34157 0.90978 1.25943 1.02019 0.94476 0.96141 1.70035 1.40443 1.03171 1.42069 0.85132 0.77235 0.77915 0.78494 1.18472 1.20160 1.19162 1.21638 1.01144 0.91867 0.95167 1.21290 0.93473 0.98505 0.98766 1.20370 0.93836 0.96148 0.96786 1.20963 1.00943 0.94040 1.01199 0.86152 0.87997 0.87349 0.72396 0.85996 0.89702 0.96524 0.93128 0.91884 0.84230 0.80498 0.88128 0.90084 0.88719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 10.39 71.24 0.74 -0.68 16 2 C 0.49 10.73 7.74 87.66 0.68 11.41 16 3 O -0.58 -20.90 14.26 -3.06 -0.04 -20.94 16 4 N -0.65 -11.09 4.97 -303.60 -1.51 -12.60 16 5 C 0.13 3.16 6.40 38.11 0.24 3.41 16 6 C -0.09 -3.45 8.26 22.67 0.19 -3.27 16 7 C -0.13 -5.36 5.87 -20.11 -0.12 -5.48 16 8 C 0.49 25.26 7.87 70.33 0.55 25.81 16 9 O -0.56 -32.82 15.60 19.94 0.31 -32.51 16 10 O -0.35 -19.03 9.11 -56.28 -0.51 -19.55 16 11 C 0.22 13.00 2.56 29.85 0.08 13.07 16 12 H 0.00 0.19 7.16 -2.39 -0.02 0.17 16 13 C -0.14 -8.03 9.33 71.98 0.67 -7.35 16 14 C -0.55 -32.83 8.90 25.60 0.23 -32.60 16 15 H 0.07 4.14 7.81 -2.91 -0.02 4.12 16 16 C 0.01 0.79 5.30 84.65 0.45 1.23 16 17 N -0.92 -55.26 11.32 21.45 0.24 -55.01 16 18 Si 0.99 44.10 29.54 68.60 2.03 46.12 16 19 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 20 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 22 C -0.08 -2.44 9.61 22.55 0.22 -2.23 16 23 C -0.10 -2.08 9.67 22.21 0.21 -1.87 16 24 C -0.07 -1.24 5.90 -19.69 -0.12 -1.36 16 25 C -0.12 -0.77 9.44 71.24 0.67 -0.10 16 26 H 0.12 0.05 7.92 -2.39 -0.02 0.03 16 27 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.43 2.76 7.22 -92.71 -0.67 2.09 16 30 H 0.12 5.45 5.38 -2.91 -0.02 5.44 16 31 H 0.08 5.04 6.07 -2.39 -0.01 5.02 16 32 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.05 2.65 8.14 -2.38 -0.02 2.63 16 34 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 35 H 0.14 4.32 7.61 -2.91 -0.02 4.29 16 36 H 0.18 2.09 8.06 -2.91 -0.02 2.06 16 37 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.08 0.33 6.97 -2.39 -0.02 0.31 16 39 H 0.09 0.41 8.08 -2.39 -0.02 0.39 16 Total: -1.00 -88.44 334.68 5.62 -82.82 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 0.41 Total: 11.67 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: 4.70 Total: 0.00 kcal Atomic # 7 Polarization: -66.35 SS G_CDS: -1.27 Total: -67.62 kcal Atomic # 8 Polarization: -72.75 SS G_CDS: -0.25 Total: -73.00 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -88.44 5.62 -82.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113692284.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.751 kcal (2) G-P(sol) polarization free energy of solvation -88.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds