Wall clock time and date at job start Tue Mar 31 2020 07:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47256 * 2 1 4 4 H 1.08998 * 109.68112 * 62.61045 * 3 2 1 5 5 C 1.53295 * 109.67976 * 302.05516 * 3 2 1 6 6 O 1.42963 * 109.22478 * 187.97372 * 5 3 2 7 7 C 1.42961 * 114.16524 * 62.57899 * 6 5 3 8 8 C 1.53716 * 109.14980 * 297.29366 * 7 6 5 9 9 N 1.47148 * 108.16135 * 52.53517 * 8 7 6 10 10 S 1.65597 * 120.98076 * 129.43382 * 9 8 7 11 11 O 1.42102 * 104.27701 * 143.56185 * 10 9 8 12 12 O 1.42101 * 104.28094 * 15.70441 * 10 9 8 13 13 C 1.81407 * 104.44880 * 259.63188 * 10 9 8 14 14 C 1.53001 * 109.46799 * 179.97438 * 13 10 9 15 15 C 1.53001 * 109.46827 * 180.02562 * 14 13 10 16 16 C 1.50706 * 109.47137 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99537 * 359.97438 * 16 15 14 18 18 C 1.37870 * 119.99886 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00369 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99966 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46792 * 359.97438 * 20 18 16 22 22 H 1.48490 * 109.47181 * 120.00086 * 20 18 16 23 23 H 1.48502 * 109.46860 * 240.00260 * 20 18 16 24 24 H 1.09000 * 109.46972 * 305.20842 * 1 2 3 25 25 H 1.09002 * 109.47125 * 65.20564 * 1 2 3 26 26 H 1.08999 * 109.47305 * 185.20450 * 1 2 3 27 27 H 1.08995 * 109.47504 * 239.99649 * 2 1 3 28 28 H 1.09003 * 109.47123 * 119.99559 * 2 1 3 29 29 H 1.09000 * 109.51472 * 307.90232 * 5 3 2 30 30 H 1.08999 * 109.51125 * 68.05365 * 5 3 2 31 31 H 1.09005 * 109.51196 * 57.34685 * 7 6 5 32 32 H 1.09004 * 109.51456 * 177.49168 * 7 6 5 33 33 H 1.08995 * 109.83174 * 292.85323 * 8 7 6 34 34 H 1.08998 * 109.74507 * 172.16378 * 8 7 6 35 35 H 1.08998 * 109.46895 * 60.00566 * 13 10 9 36 36 H 1.08995 * 109.47164 * 300.00011 * 13 10 9 37 37 H 1.08996 * 109.47469 * 60.00098 * 14 13 10 38 38 H 1.09003 * 109.47139 * 299.99746 * 14 13 10 39 39 H 1.08995 * 109.47012 * 299.99966 * 15 14 13 40 40 H 1.09004 * 109.46948 * 60.00038 * 15 14 13 41 41 H 0.96999 * 120.00363 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.7172 1.9460 0.9113 5 6 1.4898 2.1846 -1.2233 6 8 2.1154 3.4667 -1.3168 7 6 3.5302 3.4145 -1.5155 8 6 4.1852 2.7362 -0.3015 9 7 3.5096 1.4486 -0.0757 10 16 4.3777 0.0489 0.0952 11 8 3.6570 -0.6939 1.0690 12 8 5.7059 0.4884 0.3444 13 6 4.2667 -0.7536 -1.5279 14 6 5.0398 -2.0737 -1.4981 15 6 4.9467 -2.7502 -2.8672 16 6 5.7076 -4.0507 -2.8377 17 1 6.2079 -4.3632 -1.9330 18 6 5.7650 -4.8415 -3.9656 19 7 5.1562 -4.4608 -5.0674 20 14 6.7076 -6.4539 -3.9288 21 1 7.2984 -6.6512 -2.5808 22 1 5.7827 -7.5750 -4.2334 23 1 7.7915 -6.4168 -4.9432 24 1 -0.3633 0.5925 0.8397 25 1 -0.3633 0.4310 -0.9329 26 1 -0.3634 -1.0234 0.0932 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.7025 1.6091 -2.1243 30 1 0.4125 2.3121 -1.1177 31 1 3.7503 2.8435 -2.4176 32 1 3.9208 4.4267 -1.6202 33 1 4.0747 3.3683 0.5795 34 1 5.2430 2.5656 -0.5013 35 1 4.6953 -0.0991 -2.2868 36 1 3.2212 -0.9497 -1.7655 37 1 4.6117 -2.7284 -0.7390 38 1 6.0853 -1.8771 -1.2607 39 1 3.9013 -2.9466 -3.1050 40 1 5.3751 -2.0953 -3.6260 41 1 5.1969 -5.0170 -5.8610 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000115593929.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:44 Heat of formation + Delta-G solvation = -120.411011 kcal Electronic energy + Delta-G solvation = -22692.145730 eV Core-core repulsion = 19313.379213 eV Total energy + Delta-G solvation = -3378.766517 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.71372 -37.33967 -35.97426 -35.51647 -34.75813 -33.70454 -32.22681 -29.90761 -27.90987 -26.89444 -25.19203 -23.81694 -22.20134 -21.51692 -20.30449 -18.94779 -17.56444 -16.84300 -16.62762 -16.39724 -15.79809 -15.45679 -15.10898 -15.03714 -14.93642 -14.50011 -14.27605 -13.60829 -13.20828 -12.88548 -12.67013 -12.35802 -12.28722 -12.06188 -11.97499 -11.92731 -11.68275 -11.51247 -11.45832 -11.27891 -10.98118 -10.91403 -10.69232 -10.62289 -10.41073 -10.06012 -9.98420 -9.45289 -9.20029 -8.87865 -8.44406 -6.08975 -4.12210 0.34767 2.57923 3.27201 3.34890 3.39698 3.58938 3.87839 4.19174 4.29189 4.39892 4.50204 4.70649 4.78726 4.91378 5.01845 5.05409 5.12366 5.14309 5.24461 5.27601 5.32134 5.38032 5.50999 5.54717 5.67643 5.77869 5.88585 5.96450 6.02321 6.19533 6.32995 6.39903 6.42278 6.81931 6.87900 7.52852 7.62128 7.88877 8.29055 8.94223 9.52911 11.02282 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.021553 B = 0.004108 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.789746 B = 6814.946343 C = 6957.584169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.198 4.198 3 C 0.129 3.871 4 H 0.086 0.914 5 C 0.049 3.951 6 O -0.379 6.379 7 C 0.045 3.955 8 C 0.086 3.914 9 N -1.005 6.005 10 S 2.598 3.402 11 O -0.954 6.954 12 O -0.961 6.961 13 C -0.613 4.613 14 C -0.105 4.105 15 C 0.031 3.969 16 C -0.526 4.526 17 H 0.059 0.941 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.894 3.106 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.135 0.865 29 H 0.059 0.941 30 H 0.106 0.894 31 H 0.058 0.942 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.020 0.980 40 H 0.020 0.980 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.130 15.634 7.992 19.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.236 4.236 3 C 0.023 3.977 4 H 0.104 0.896 5 C -0.029 4.029 6 O -0.297 6.297 7 C -0.033 4.033 8 C -0.040 4.040 9 N -0.843 5.843 10 S 2.697 3.303 11 O -0.944 6.944 12 O -0.951 6.951 13 C -0.744 4.744 14 C -0.144 4.144 15 C -0.007 4.007 16 C -0.564 4.564 17 H 0.077 0.923 18 C -0.143 4.143 19 N -0.534 5.534 20 Si 0.721 3.279 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.153 0.847 29 H 0.077 0.923 30 H 0.124 0.876 31 H 0.077 0.923 32 H 0.123 0.877 33 H 0.096 0.904 34 H 0.122 0.878 35 H 0.145 0.855 36 H 0.148 0.852 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.805 15.517 8.657 19.407 hybrid contribution 0.391 -1.073 -0.927 1.471 sum -7.414 14.443 7.730 17.981 Atomic orbital electron populations 1.21666 0.93944 1.02697 1.01773 1.22973 0.98704 0.94949 1.06929 1.21667 0.78734 0.97672 0.99669 0.89622 1.23141 0.98000 0.84823 0.96983 1.87940 1.20167 1.28108 1.93500 1.23090 0.81621 1.01968 0.96640 1.22194 0.97799 0.84681 0.99306 1.58068 1.15113 1.21908 1.89196 1.05481 0.73207 0.73366 0.78271 1.93464 1.71572 1.71915 1.57453 1.93540 1.36716 1.79966 1.84901 1.30791 1.10687 1.11331 1.21613 1.21506 0.98024 0.90769 1.04124 1.19064 0.97674 0.94955 0.89043 1.21284 1.32659 1.04813 0.97677 0.92302 1.25015 0.95595 0.98267 0.95452 1.69963 1.43429 1.38190 1.01850 0.86503 0.79721 0.83431 0.78208 1.19575 1.20906 1.20917 0.92275 0.92630 0.91669 0.91116 0.84697 0.92286 0.87643 0.92323 0.87705 0.90391 0.87773 0.85505 0.85221 0.91519 0.91614 0.96125 0.96149 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.36 37.16 0.35 -0.89 16 2 C -0.20 -2.19 4.22 -26.73 -0.11 -2.31 16 3 C 0.13 1.37 3.18 -67.42 -0.21 1.15 16 4 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 5 C 0.05 0.47 5.62 37.31 0.21 0.67 16 6 O -0.38 -4.05 10.74 -35.23 -0.38 -4.42 16 7 C 0.05 0.41 7.00 37.53 0.26 0.67 16 8 C 0.09 0.88 6.59 -3.32 -0.02 0.86 16 9 N -1.01 -12.07 3.26 -105.80 -0.34 -12.41 16 10 S 2.60 38.94 4.85 -107.50 -0.52 38.42 16 11 O -0.95 -16.00 14.19 -57.54 -0.82 -16.82 16 12 O -0.96 -16.87 16.49 -57.54 -0.95 -17.81 16 13 C -0.61 -9.45 5.95 37.16 0.22 -9.23 16 14 C -0.10 -2.10 5.16 -26.73 -0.14 -2.24 16 15 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 16 C -0.53 -14.70 9.11 -34.44 -0.31 -15.01 16 17 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.90 -26.39 13.29 55.43 0.74 -25.66 16 20 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.41 6.90 -51.93 -0.36 0.05 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.80 5.14 -51.93 -0.27 0.53 16 28 H 0.14 1.78 5.19 -52.12 -0.27 1.51 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.11 0.81 7.01 -51.93 -0.36 0.45 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.10 1.05 6.93 -51.93 -0.36 0.69 16 35 H 0.13 1.76 8.14 -51.93 -0.42 1.34 16 36 H 0.13 1.80 5.64 -51.93 -0.29 1.51 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 330.85 15.07 4.99 4.99 Total: -1.00 -33.63 330.85 -8.83 -42.46 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -6.53 Total: -1.00 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: 0.01 Total: -24.14 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.39 Total: -38.07 kcal Atomic # 8 Polarization: -36.92 SS G_CDS: -2.14 Total: -39.06 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 38.94 SS G_CDS: -0.52 Total: 38.42 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.63 -8.83 -42.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115593929.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.954 kcal (2) G-P(sol) polarization free energy of solvation -33.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds