Wall clock time and date at job start Tue Mar 31 2020 07:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47256 * 2 1 4 4 H 1.08998 * 109.68112 * 62.61045 * 3 2 1 5 5 C 1.53295 * 109.67976 * 302.05516 * 3 2 1 6 6 O 1.42963 * 109.22478 * 187.97372 * 5 3 2 7 7 C 1.42961 * 114.16524 * 62.57899 * 6 5 3 8 8 C 1.53716 * 109.14980 * 297.29366 * 7 6 5 9 9 N 1.47148 * 108.16135 * 52.53517 * 8 7 6 10 10 S 1.65597 * 120.98076 * 129.43382 * 9 8 7 11 11 O 1.42102 * 104.27701 * 143.56185 * 10 9 8 12 12 O 1.42101 * 104.28094 * 15.70441 * 10 9 8 13 13 C 1.81407 * 104.44880 * 259.63188 * 10 9 8 14 14 C 1.53001 * 109.46799 * 179.97438 * 13 10 9 15 15 C 1.53001 * 109.46827 * 180.02562 * 14 13 10 16 16 C 1.50706 * 109.47137 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99537 * 359.97438 * 16 15 14 18 18 C 1.37870 * 119.99886 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00369 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99966 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46792 * 359.97438 * 20 18 16 22 22 H 1.48490 * 109.47181 * 120.00086 * 20 18 16 23 23 H 1.48502 * 109.46860 * 240.00260 * 20 18 16 24 24 H 1.09000 * 109.46972 * 305.20842 * 1 2 3 25 25 H 1.09002 * 109.47125 * 65.20564 * 1 2 3 26 26 H 1.08999 * 109.47305 * 185.20450 * 1 2 3 27 27 H 1.08995 * 109.47504 * 239.99649 * 2 1 3 28 28 H 1.09003 * 109.47123 * 119.99559 * 2 1 3 29 29 H 1.09000 * 109.51472 * 307.90232 * 5 3 2 30 30 H 1.08999 * 109.51125 * 68.05365 * 5 3 2 31 31 H 1.09005 * 109.51196 * 57.34685 * 7 6 5 32 32 H 1.09004 * 109.51456 * 177.49168 * 7 6 5 33 33 H 1.08995 * 109.83174 * 292.85323 * 8 7 6 34 34 H 1.08998 * 109.74507 * 172.16378 * 8 7 6 35 35 H 1.08998 * 109.46895 * 60.00566 * 13 10 9 36 36 H 1.08995 * 109.47164 * 300.00011 * 13 10 9 37 37 H 1.08996 * 109.47469 * 60.00098 * 14 13 10 38 38 H 1.09003 * 109.47139 * 299.99746 * 14 13 10 39 39 H 1.08995 * 109.47012 * 299.99966 * 15 14 13 40 40 H 1.09004 * 109.46948 * 60.00038 * 15 14 13 41 41 H 0.96999 * 120.00363 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.7172 1.9460 0.9113 5 6 1.4898 2.1846 -1.2233 6 8 2.1154 3.4667 -1.3168 7 6 3.5302 3.4145 -1.5155 8 6 4.1852 2.7362 -0.3015 9 7 3.5096 1.4486 -0.0757 10 16 4.3777 0.0489 0.0952 11 8 3.6570 -0.6939 1.0690 12 8 5.7059 0.4884 0.3444 13 6 4.2667 -0.7536 -1.5279 14 6 5.0398 -2.0737 -1.4981 15 6 4.9467 -2.7502 -2.8672 16 6 5.7076 -4.0507 -2.8377 17 1 6.2079 -4.3632 -1.9330 18 6 5.7650 -4.8415 -3.9656 19 7 5.1562 -4.4608 -5.0674 20 14 6.7076 -6.4539 -3.9288 21 1 7.2984 -6.6512 -2.5808 22 1 5.7827 -7.5750 -4.2334 23 1 7.7915 -6.4168 -4.9432 24 1 -0.3633 0.5925 0.8397 25 1 -0.3633 0.4310 -0.9329 26 1 -0.3634 -1.0234 0.0932 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.7025 1.6091 -2.1243 30 1 0.4125 2.3121 -1.1177 31 1 3.7503 2.8435 -2.4176 32 1 3.9208 4.4267 -1.6202 33 1 4.0747 3.3683 0.5795 34 1 5.2430 2.5656 -0.5013 35 1 4.6953 -0.0991 -2.2868 36 1 3.2212 -0.9497 -1.7655 37 1 4.6117 -2.7284 -0.7390 38 1 6.0853 -1.8771 -1.2607 39 1 3.9013 -2.9466 -3.1050 40 1 5.3751 -2.0953 -3.6260 41 1 5.1969 -5.0170 -5.8610 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000115593929.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:44 Heat of formation + Delta-G solvation = -144.264686 kcal Electronic energy + Delta-G solvation = -22693.180103 eV Core-core repulsion = 19313.379213 eV Total energy + Delta-G solvation = -3379.800890 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.52087 -38.56547 -37.20539 -36.54810 -36.43172 -34.60364 -34.16235 -30.66048 -29.73575 -27.73645 -26.00761 -25.63427 -22.99300 -22.82124 -21.69440 -20.05976 -18.79068 -18.41809 -17.76572 -17.42356 -17.14246 -16.53764 -16.27165 -16.20723 -15.91807 -15.77417 -15.59988 -14.62359 -14.39952 -14.12506 -14.01112 -13.75047 -13.57354 -13.27715 -13.17886 -13.05355 -13.03618 -12.82623 -12.68075 -12.48976 -12.33989 -12.25001 -12.11074 -11.85194 -11.52761 -11.47299 -11.34988 -11.15542 -10.81502 -10.60021 -9.81223 -8.24679 -6.35843 -0.86586 1.38656 1.39545 1.50751 1.52755 2.38382 2.67533 2.88376 3.03933 3.09195 3.39155 3.62437 3.74819 3.79237 3.97597 4.03947 4.17674 4.26415 4.35533 4.37614 4.48631 4.53917 4.61299 4.68220 4.77734 4.82662 4.89910 4.94938 5.00602 5.10059 5.20754 5.30188 5.42414 5.44280 5.54134 5.59181 5.76793 6.15405 6.17107 6.79714 7.33902 8.87059 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.021553 B = 0.004108 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.789746 B = 6814.946343 C = 6957.584169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.202 4.202 3 C 0.127 3.873 4 H 0.094 0.906 5 C 0.048 3.952 6 O -0.390 6.390 7 C 0.044 3.956 8 C 0.078 3.922 9 N -1.001 6.001 10 S 2.619 3.381 11 O -0.973 6.973 12 O -0.987 6.987 13 C -0.613 4.613 14 C -0.104 4.104 15 C 0.032 3.968 16 C -0.552 4.552 17 H 0.060 0.940 18 C 0.004 3.996 19 N -0.930 5.930 20 Si 0.962 3.038 21 H -0.264 1.264 22 H -0.276 1.276 23 H -0.277 1.277 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.113 0.887 29 H 0.059 0.941 30 H 0.127 0.873 31 H 0.060 0.940 32 H 0.130 0.870 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.142 0.858 36 H 0.144 0.856 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.003 0.997 40 H 0.002 0.998 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.633 16.430 8.257 20.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.240 4.240 3 C 0.022 3.978 4 H 0.112 0.888 5 C -0.030 4.030 6 O -0.308 6.308 7 C -0.034 4.034 8 C -0.047 4.047 9 N -0.840 5.840 10 S 2.718 3.282 11 O -0.963 6.963 12 O -0.977 6.977 13 C -0.743 4.743 14 C -0.143 4.143 15 C -0.006 4.006 16 C -0.590 4.590 17 H 0.078 0.922 18 C -0.194 4.194 19 N -0.570 5.570 20 Si 0.787 3.213 21 H -0.188 1.188 22 H -0.202 1.202 23 H -0.202 1.202 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.131 0.869 29 H 0.078 0.922 30 H 0.145 0.855 31 H 0.078 0.922 32 H 0.147 0.853 33 H 0.107 0.893 34 H 0.122 0.878 35 H 0.160 0.840 36 H 0.162 0.838 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.022 0.978 40 H 0.020 0.980 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.303 16.307 8.924 20.359 hybrid contribution 0.507 -1.254 -1.000 1.682 sum -7.796 15.053 7.924 18.713 Atomic orbital electron populations 1.21681 0.92014 1.03002 1.03235 1.22945 1.00546 0.95015 1.05488 1.21831 0.77575 0.97571 1.00838 0.88791 1.23241 0.99102 0.84401 0.96214 1.87934 1.20851 1.28548 1.93449 1.23234 0.80969 1.03321 0.95897 1.22442 0.97864 0.83804 1.00566 1.57848 1.15801 1.21412 1.88972 1.04650 0.72558 0.73575 0.77460 1.93464 1.71784 1.73016 1.58040 1.93501 1.38551 1.80567 1.85122 1.30763 1.11013 1.09337 1.23227 1.21303 0.98952 0.92897 1.01126 1.18951 0.95968 0.94286 0.91382 1.21753 1.33091 1.06212 0.97936 0.92182 1.25915 0.96480 1.01966 0.95035 1.70071 1.44645 1.39719 1.02543 0.85436 0.78423 0.78908 0.78553 1.18783 1.20154 1.20214 0.90981 0.91018 0.92008 0.91697 0.86891 0.92242 0.85516 0.92160 0.85251 0.89266 0.87808 0.84016 0.83765 0.91412 0.91692 0.97812 0.97957 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.36 71.98 0.67 -1.52 16 2 C -0.20 -4.26 4.22 30.59 0.13 -4.13 16 3 C 0.13 2.48 3.18 44.97 0.14 2.62 16 4 H 0.09 1.70 8.14 -2.39 -0.02 1.69 16 5 C 0.05 0.80 5.62 72.08 0.41 1.21 16 6 O -0.39 -7.29 10.74 -148.98 -1.60 -8.89 16 7 C 0.04 0.69 7.00 72.22 0.51 1.20 16 8 C 0.08 1.46 6.59 86.50 0.57 2.03 16 9 N -1.00 -22.66 3.26 -488.63 -1.59 -24.25 16 10 S 2.62 77.32 4.85 -56.49 -0.27 77.04 16 11 O -0.97 -32.55 14.19 -127.65 -1.81 -34.36 16 12 O -0.99 -34.29 16.49 -127.65 -2.11 -36.39 16 13 C -0.61 -18.76 5.95 71.98 0.43 -18.33 16 14 C -0.10 -4.21 5.16 30.60 0.16 -4.05 16 15 C 0.03 1.66 4.97 29.85 0.15 1.81 16 16 C -0.55 -31.27 9.11 25.60 0.23 -31.04 16 17 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 18 C 0.00 0.25 5.46 84.65 0.46 0.71 16 19 N -0.93 -55.43 13.29 21.44 0.28 -55.14 16 20 Si 0.96 43.93 29.54 68.60 2.03 45.96 16 21 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 24 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.07 0.88 6.90 -2.39 -0.02 0.86 16 26 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.06 1.41 5.14 -2.39 -0.01 1.40 16 28 H 0.11 2.95 5.19 -5.36 -0.03 2.93 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.13 1.55 7.01 -2.39 -0.02 1.53 16 31 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.13 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.10 1.96 6.93 -2.39 -0.02 1.94 16 35 H 0.14 3.86 8.14 -2.39 -0.02 3.84 16 36 H 0.14 3.96 5.64 -2.39 -0.01 3.94 16 37 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 38 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 40 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 41 H 0.27 14.78 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -71.76 330.85 -0.22 -71.98 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 0.99 Total: 13.55 kcal Atomic # 6 Polarization: -53.35 SS G_CDS: 3.86 Total: -49.50 kcal Atomic # 7 Polarization: -78.09 SS G_CDS: -1.31 Total: -79.39 kcal Atomic # 8 Polarization: -74.12 SS G_CDS: -5.52 Total: -79.64 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: 77.32 SS G_CDS: -0.27 Total: 77.04 kcal Total: -71.76 -0.22 -71.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115593929.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.282 kcal (2) G-P(sol) polarization free energy of solvation -71.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds