Wall clock time and date at job start Tue Mar 31 2020 07:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47273 * 2 1 4 4 H 1.08994 * 109.68463 * 305.48084 * 3 2 1 5 5 C 1.53298 * 109.67839 * 66.03285 * 3 2 1 6 6 O 1.42957 * 109.22439 * 172.02394 * 5 3 2 7 7 C 1.42968 * 114.16894 * 297.42280 * 6 5 3 8 8 C 1.52873 * 109.29718 * 62.44410 * 7 6 5 9 9 N 1.47149 * 109.68327 * 184.95823 * 3 2 1 10 10 S 1.65603 * 120.98143 * 9.72070 * 9 3 2 11 11 O 1.42103 * 104.27619 * 318.50246 * 10 9 3 12 12 O 1.42099 * 104.27704 * 190.64579 * 10 9 3 13 13 C 1.81402 * 104.44565 * 74.57432 * 10 9 3 14 14 C 1.53002 * 109.46951 * 175.51128 * 13 10 9 15 15 C 1.53000 * 109.47342 * 179.97438 * 14 13 10 16 16 C 1.50694 * 109.47286 * 179.97438 * 15 14 13 17 17 H 1.08007 * 119.99921 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00358 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99728 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 120.00222 * 179.97438 * 18 16 15 21 21 H 1.48509 * 109.47182 * 180.02562 * 20 18 16 22 22 H 1.48501 * 109.47624 * 300.00107 * 20 18 16 23 23 H 1.48502 * 109.47439 * 60.00283 * 20 18 16 24 24 H 1.09007 * 109.46909 * 53.81581 * 1 2 3 25 25 H 1.09000 * 109.47139 * 173.81404 * 1 2 3 26 26 H 1.09003 * 109.47260 * 293.81480 * 1 2 3 27 27 H 1.09004 * 109.46819 * 240.00648 * 2 1 3 28 28 H 1.08996 * 109.47337 * 120.00483 * 2 1 3 29 29 H 1.09000 * 109.51414 * 291.94556 * 5 3 2 30 30 H 1.09007 * 109.51040 * 52.09898 * 5 3 2 31 31 H 1.08993 * 109.51395 * 182.50641 * 7 6 5 32 32 H 1.09006 * 109.50883 * 302.60334 * 7 6 5 33 33 H 1.09004 * 109.61841 * 188.12201 * 8 7 6 34 34 H 1.08997 * 109.52377 * 67.70386 * 8 7 6 35 35 H 1.08999 * 109.47078 * 55.51467 * 13 10 9 36 36 H 1.08992 * 109.47193 * 295.50760 * 13 10 9 37 37 H 1.09006 * 109.46864 * 59.99886 * 14 13 10 38 38 H 1.09007 * 109.47179 * 300.00204 * 14 13 10 39 39 H 1.08999 * 109.46767 * 60.00289 * 15 14 13 40 40 H 1.08995 * 109.46828 * 300.00251 * 15 14 13 41 41 H 0.97003 * 119.99818 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6008 1.9872 -0.8357 5 6 1.6593 2.1246 1.3190 6 8 2.2958 3.4028 1.3887 7 6 3.7243 3.3458 1.3953 8 6 4.2112 2.7251 0.0859 9 7 3.5066 1.4496 -0.1197 10 16 4.3402 0.0619 -0.4687 11 8 3.7029 -0.9365 0.3164 12 8 5.7015 0.4066 -0.2512 13 6 4.0293 -0.2212 -2.2333 14 6 4.8441 -1.4262 -2.7078 15 6 4.5814 -1.6654 -4.1960 16 6 5.3844 -2.8518 -4.6635 17 1 6.0191 -3.3819 -3.9687 18 6 5.3090 -3.2605 -5.9781 19 7 4.5366 -2.6147 -6.8243 20 14 6.3049 -4.7307 -6.5577 21 1 6.0499 -4.9630 -8.0022 22 1 7.7505 -4.4634 -6.3476 23 1 5.9067 -5.9344 -5.7845 24 1 -0.3633 0.6068 -0.8295 25 1 -0.3633 -1.0217 -0.1107 26 1 -0.3634 0.4150 0.9402 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 0.5779 2.2536 1.3633 30 1 1.9878 1.5081 2.1558 31 1 4.1284 4.3532 1.4946 32 1 4.0604 2.7345 2.2330 33 1 5.2849 2.5462 0.1426 34 1 3.9943 3.4016 -0.7407 35 1 4.3232 0.6621 -2.8003 36 1 2.9683 -0.4163 -2.3886 37 1 4.5502 -2.3095 -2.1407 38 1 5.9053 -1.2311 -2.5525 39 1 4.8750 -0.7822 -4.7633 40 1 3.5203 -1.8606 -4.3508 41 1 4.0197 -1.8510 -6.5233 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000115593931.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:46 Heat of formation + Delta-G solvation = -127.103388 kcal Electronic energy + Delta-G solvation = -22573.882589 eV Core-core repulsion = 19194.825869 eV Total energy + Delta-G solvation = -3379.056720 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.77149 -37.38136 -36.02138 -35.57876 -34.98476 -33.74396 -32.31803 -30.03325 -27.65044 -26.93720 -25.17857 -23.46656 -22.20177 -21.62806 -20.79691 -18.93718 -17.53154 -17.06520 -16.92026 -16.21701 -16.09739 -15.54160 -15.28304 -15.11237 -14.66722 -14.32921 -13.76888 -13.70998 -13.39748 -13.33411 -12.90239 -12.46828 -12.18595 -12.10267 -12.02617 -11.95396 -11.68174 -11.56703 -11.45200 -11.42589 -10.90100 -10.83565 -10.71123 -10.62223 -10.24495 -10.15335 -10.12394 -9.80029 -9.01720 -8.59996 -8.39300 -6.43130 -4.13188 0.28678 2.53198 3.42131 3.43789 3.53190 3.62467 3.82686 4.16077 4.23031 4.44213 4.50160 4.69011 4.79007 4.82004 4.94668 5.00009 5.09269 5.13585 5.15438 5.26974 5.32849 5.34838 5.46944 5.48613 5.63254 5.69587 5.83878 5.87871 5.92739 6.08245 6.21653 6.29287 6.35796 6.67073 6.82164 7.23040 7.34978 8.10383 8.38543 8.80344 9.59173 10.97510 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.027292 B = 0.003842 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.700633 B = 7285.213983 C = 7685.666496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.161 4.161 3 C 0.121 3.879 4 H 0.084 0.916 5 C 0.056 3.944 6 O -0.380 6.380 7 C 0.051 3.949 8 C 0.080 3.920 9 N -1.005 6.005 10 S 2.599 3.401 11 O -0.954 6.954 12 O -0.961 6.961 13 C -0.613 4.613 14 C -0.097 4.097 15 C 0.018 3.982 16 C -0.608 4.608 17 H 0.052 0.948 18 C 0.016 3.984 19 N -0.911 5.911 20 Si 1.070 2.930 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.287 1.287 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.112 0.888 29 H 0.105 0.895 30 H 0.059 0.941 31 H 0.106 0.894 32 H 0.056 0.944 33 H 0.109 0.891 34 H 0.076 0.924 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.011 0.989 40 H 0.011 0.989 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.688 11.968 16.138 21.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.199 4.199 3 C 0.015 3.985 4 H 0.102 0.898 5 C -0.022 4.022 6 O -0.298 6.298 7 C -0.028 4.028 8 C -0.045 4.045 9 N -0.843 5.843 10 S 2.697 3.303 11 O -0.945 6.945 12 O -0.951 6.951 13 C -0.744 4.744 14 C -0.137 4.137 15 C -0.021 4.021 16 C -0.646 4.646 17 H 0.070 0.930 18 C -0.188 4.188 19 N -0.547 5.547 20 Si 0.897 3.103 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.213 1.213 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.130 0.870 29 H 0.123 0.877 30 H 0.077 0.923 31 H 0.124 0.876 32 H 0.074 0.926 33 H 0.127 0.873 34 H 0.094 0.906 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.030 0.970 40 H 0.030 0.970 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.919 10.729 15.461 19.728 hybrid contribution -0.515 0.990 0.596 1.265 sum -6.434 11.720 16.056 20.894 Atomic orbital electron populations 1.21762 0.94339 1.02703 1.01877 1.22500 0.97529 0.93952 1.05968 1.21788 0.79243 0.98011 0.99477 0.89834 1.23017 0.98290 0.84940 0.95964 1.87938 1.18804 1.28444 1.94601 1.22853 0.81548 1.02004 0.96361 1.22085 0.98514 0.85017 0.98883 1.58037 1.15202 1.24496 1.86548 1.05441 0.73405 0.73056 0.78363 1.93598 1.75549 1.58663 1.66644 1.93529 1.33585 1.82514 1.85512 1.30686 1.10796 1.09622 1.23303 1.21362 0.97939 0.92399 1.01990 1.19180 0.96913 0.97265 0.88693 1.22061 1.29474 1.15186 0.97882 0.93007 1.25893 0.97513 1.02128 0.93240 1.70802 1.26145 1.20335 1.37416 0.83535 0.75566 0.74919 0.76247 1.20693 1.21314 1.21310 0.92441 0.91669 0.92369 0.91308 0.86958 0.87676 0.92276 0.87597 0.92604 0.87328 0.90575 0.85442 0.85438 0.91530 0.91334 0.97041 0.97035 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.55 37.16 0.35 -0.92 16 2 C -0.16 -1.78 3.82 -26.73 -0.10 -1.88 16 3 C 0.12 1.26 3.16 -67.42 -0.21 1.04 16 4 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 5 C 0.06 0.53 5.86 37.31 0.22 0.75 16 6 O -0.38 -3.99 10.74 -35.23 -0.38 -4.37 16 7 C 0.05 0.46 6.97 37.09 0.26 0.72 16 8 C 0.08 0.82 6.67 -3.75 -0.03 0.79 16 9 N -1.00 -11.94 3.26 -106.27 -0.35 -12.29 16 10 S 2.60 38.81 4.86 -107.50 -0.52 38.29 16 11 O -0.95 -15.80 13.81 -57.54 -0.79 -16.59 16 12 O -0.96 -16.78 16.31 -57.54 -0.94 -17.72 16 13 C -0.61 -9.61 5.94 37.16 0.22 -9.39 16 14 C -0.10 -2.00 5.16 -26.73 -0.14 -2.14 16 15 C 0.02 0.45 4.28 -27.89 -0.12 0.33 16 16 C -0.61 -17.38 9.11 -34.44 -0.31 -17.69 16 17 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 18 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 19 N -0.91 -27.77 13.65 55.43 0.76 -27.01 16 20 Si 1.07 25.27 29.90 -169.99 -5.08 20.18 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.40 7.12 -51.93 -0.37 0.03 16 27 H 0.07 0.83 4.92 -51.93 -0.26 0.57 16 28 H 0.11 1.40 6.30 -51.93 -0.33 1.08 16 29 H 0.11 0.77 7.18 -51.93 -0.37 0.40 16 30 H 0.06 0.57 8.13 -51.93 -0.42 0.14 16 31 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.11 1.13 6.62 -51.93 -0.34 0.79 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.13 1.81 8.14 -51.92 -0.42 1.39 16 36 H 0.13 1.80 6.44 -51.93 -0.33 1.47 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 38 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.01 0.30 8.01 -51.93 -0.42 -0.12 16 40 H 0.01 0.30 8.01 -51.93 -0.42 -0.12 16 41 H 0.27 8.08 7.22 -40.82 -0.29 7.78 16 LS Contribution 330.80 15.07 4.99 4.99 Total: -1.00 -34.57 330.80 -8.84 -43.41 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -6.56 Total: -0.87 kcal Atomic # 6 Polarization: -28.06 SS G_CDS: 0.04 Total: -28.01 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.41 Total: -39.30 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -2.11 Total: -38.69 kcal Atomic # 14 Polarization: 25.27 SS G_CDS: -5.08 Total: 20.18 kcal Atomic # 16 Polarization: 38.81 SS G_CDS: -0.52 Total: 38.29 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.57 -8.84 -43.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115593931.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.698 kcal (2) G-P(sol) polarization free energy of solvation -34.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds