Wall clock time and date at job start Tue Mar 31 2020 07:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47273 * 2 1 4 4 H 1.08994 * 109.68463 * 305.48084 * 3 2 1 5 5 C 1.53298 * 109.67839 * 66.03285 * 3 2 1 6 6 O 1.42957 * 109.22439 * 172.02394 * 5 3 2 7 7 C 1.42968 * 114.16894 * 297.42280 * 6 5 3 8 8 C 1.52873 * 109.29718 * 62.44410 * 7 6 5 9 9 N 1.47149 * 109.68327 * 184.95823 * 3 2 1 10 10 S 1.65603 * 120.98143 * 9.72070 * 9 3 2 11 11 O 1.42103 * 104.27619 * 318.50246 * 10 9 3 12 12 O 1.42099 * 104.27704 * 190.64579 * 10 9 3 13 13 C 1.81402 * 104.44565 * 74.57432 * 10 9 3 14 14 C 1.53002 * 109.46951 * 175.51128 * 13 10 9 15 15 C 1.53000 * 109.47342 * 179.97438 * 14 13 10 16 16 C 1.50694 * 109.47286 * 179.97438 * 15 14 13 17 17 H 1.08007 * 119.99921 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00358 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99728 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 120.00222 * 179.97438 * 18 16 15 21 21 H 1.48509 * 109.47182 * 180.02562 * 20 18 16 22 22 H 1.48501 * 109.47624 * 300.00107 * 20 18 16 23 23 H 1.48502 * 109.47439 * 60.00283 * 20 18 16 24 24 H 1.09007 * 109.46909 * 53.81581 * 1 2 3 25 25 H 1.09000 * 109.47139 * 173.81404 * 1 2 3 26 26 H 1.09003 * 109.47260 * 293.81480 * 1 2 3 27 27 H 1.09004 * 109.46819 * 240.00648 * 2 1 3 28 28 H 1.08996 * 109.47337 * 120.00483 * 2 1 3 29 29 H 1.09000 * 109.51414 * 291.94556 * 5 3 2 30 30 H 1.09007 * 109.51040 * 52.09898 * 5 3 2 31 31 H 1.08993 * 109.51395 * 182.50641 * 7 6 5 32 32 H 1.09006 * 109.50883 * 302.60334 * 7 6 5 33 33 H 1.09004 * 109.61841 * 188.12201 * 8 7 6 34 34 H 1.08997 * 109.52377 * 67.70386 * 8 7 6 35 35 H 1.08999 * 109.47078 * 55.51467 * 13 10 9 36 36 H 1.08992 * 109.47193 * 295.50760 * 13 10 9 37 37 H 1.09006 * 109.46864 * 59.99886 * 14 13 10 38 38 H 1.09007 * 109.47179 * 300.00204 * 14 13 10 39 39 H 1.08999 * 109.46767 * 60.00289 * 15 14 13 40 40 H 1.08995 * 109.46828 * 300.00251 * 15 14 13 41 41 H 0.97003 * 119.99818 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6008 1.9872 -0.8357 5 6 1.6593 2.1246 1.3190 6 8 2.2958 3.4028 1.3887 7 6 3.7243 3.3458 1.3953 8 6 4.2112 2.7251 0.0859 9 7 3.5066 1.4496 -0.1197 10 16 4.3402 0.0619 -0.4687 11 8 3.7029 -0.9365 0.3164 12 8 5.7015 0.4066 -0.2512 13 6 4.0293 -0.2212 -2.2333 14 6 4.8441 -1.4262 -2.7078 15 6 4.5814 -1.6654 -4.1960 16 6 5.3844 -2.8518 -4.6635 17 1 6.0191 -3.3819 -3.9687 18 6 5.3090 -3.2605 -5.9781 19 7 4.5366 -2.6147 -6.8243 20 14 6.3049 -4.7307 -6.5577 21 1 6.0499 -4.9630 -8.0022 22 1 7.7505 -4.4634 -6.3476 23 1 5.9067 -5.9344 -5.7845 24 1 -0.3633 0.6068 -0.8295 25 1 -0.3633 -1.0217 -0.1107 26 1 -0.3634 0.4150 0.9402 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 0.5779 2.2536 1.3633 30 1 1.9878 1.5081 2.1558 31 1 4.1284 4.3532 1.4946 32 1 4.0604 2.7345 2.2330 33 1 5.2849 2.5462 0.1426 34 1 3.9943 3.4016 -0.7407 35 1 4.3232 0.6621 -2.8003 36 1 2.9683 -0.4163 -2.3886 37 1 4.5502 -2.3095 -2.1407 38 1 5.9053 -1.2311 -2.5525 39 1 4.8750 -0.7822 -4.7633 40 1 3.5203 -1.8606 -4.3508 41 1 4.0197 -1.8510 -6.5233 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000115593931.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:46 Heat of formation + Delta-G solvation = -151.766205 kcal Electronic energy + Delta-G solvation = -22574.952049 eV Core-core repulsion = 19194.825869 eV Total energy + Delta-G solvation = -3380.126180 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.56771 -38.60168 -37.24845 -36.84082 -36.50355 -34.62827 -34.24355 -30.77595 -29.42305 -27.83649 -25.96988 -25.43905 -22.99283 -22.93551 -22.15133 -20.07180 -19.10395 -18.43722 -17.94908 -17.42762 -17.11759 -16.60997 -16.24238 -15.94243 -15.71598 -15.70169 -15.56241 -15.26282 -14.53894 -14.21533 -13.96912 -13.82595 -13.68338 -13.32443 -13.27045 -13.22415 -13.10733 -12.64789 -12.59320 -12.44815 -12.29568 -12.21987 -11.96246 -11.93193 -11.70383 -11.50222 -11.35497 -11.11657 -10.72800 -10.58827 -9.86562 -8.74013 -6.45375 -0.92556 1.46516 1.51530 1.59349 1.79143 2.53026 2.61937 2.83483 3.01796 3.11003 3.32433 3.58923 3.65911 3.68780 3.93811 4.06422 4.09602 4.18818 4.28472 4.36649 4.38708 4.44628 4.54161 4.62365 4.70170 4.75063 4.80934 4.81744 4.91403 5.05120 5.10834 5.20604 5.25379 5.31206 5.37673 5.51512 5.91444 6.09981 6.12339 6.51691 7.35969 8.67300 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.027292 B = 0.003842 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.700633 B = 7285.213983 C = 7685.666496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.165 4.165 3 C 0.118 3.882 4 H 0.100 0.900 5 C 0.055 3.945 6 O -0.388 6.388 7 C 0.049 3.951 8 C 0.072 3.928 9 N -1.000 6.000 10 S 2.621 3.379 11 O -0.972 6.972 12 O -0.987 6.987 13 C -0.614 4.614 14 C -0.097 4.097 15 C 0.016 3.984 16 C -0.630 4.630 17 H 0.052 0.948 18 C -0.036 4.036 19 N -0.934 5.934 20 Si 1.116 2.884 21 H -0.281 1.281 22 H -0.269 1.269 23 H -0.268 1.268 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.076 0.924 27 H 0.054 0.946 28 H 0.095 0.905 29 H 0.130 0.870 30 H 0.054 0.946 31 H 0.133 0.867 32 H 0.052 0.948 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.065 0.935 38 H 0.065 0.935 39 H -0.001 1.001 40 H 0.000 1.000 41 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.160 12.785 16.988 22.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.204 4.204 3 C 0.013 3.987 4 H 0.118 0.882 5 C -0.023 4.023 6 O -0.307 6.307 7 C -0.029 4.029 8 C -0.053 4.053 9 N -0.840 5.840 10 S 2.719 3.281 11 O -0.962 6.962 12 O -0.977 6.977 13 C -0.744 4.744 14 C -0.136 4.136 15 C -0.023 4.023 16 C -0.668 4.668 17 H 0.070 0.930 18 C -0.233 4.233 19 N -0.571 5.571 20 Si 0.937 3.063 21 H -0.206 1.206 22 H -0.194 1.194 23 H -0.194 1.194 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.095 0.905 27 H 0.073 0.927 28 H 0.113 0.887 29 H 0.148 0.852 30 H 0.073 0.927 31 H 0.151 0.849 32 H 0.071 0.929 33 H 0.122 0.878 34 H 0.112 0.888 35 H 0.160 0.840 36 H 0.160 0.840 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.017 0.983 40 H 0.018 0.982 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.391 11.551 16.321 20.991 hybrid contribution -0.410 0.806 0.384 0.983 sum -6.801 12.358 16.705 21.864 Atomic orbital electron populations 1.21768 0.92336 1.02927 1.03433 1.22486 0.99396 0.94114 1.04403 1.22002 0.78000 0.97849 1.00891 0.88226 1.23131 0.99665 0.84514 0.94969 1.87933 1.19378 1.28838 1.94503 1.23000 0.81094 1.03411 0.95397 1.22342 0.98237 0.84283 1.00389 1.57811 1.16029 1.24200 1.85958 1.04586 0.72730 0.73347 0.77437 1.93589 1.75731 1.60142 1.66743 1.93490 1.35491 1.83133 1.85629 1.30664 1.10911 1.08015 1.24807 1.21173 0.98762 0.94771 0.98939 1.19120 0.95629 0.95731 0.91781 1.22547 1.29729 1.16212 0.98304 0.93012 1.27438 0.97773 1.04335 0.93782 1.70928 1.27435 1.20826 1.37946 0.82954 0.75091 0.72298 0.75992 1.20606 1.19413 1.19356 0.91303 0.92114 0.90470 0.92738 0.88697 0.85245 0.92733 0.84914 0.92946 0.87801 0.88807 0.83982 0.83953 0.91585 0.91634 0.98290 0.98175 0.93376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.55 71.98 0.69 -1.53 16 2 C -0.17 -3.45 3.82 30.59 0.12 -3.34 16 3 C 0.12 2.21 3.16 44.97 0.14 2.35 16 4 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 5 C 0.06 0.91 5.86 72.08 0.42 1.33 16 6 O -0.39 -7.10 10.74 -148.98 -1.60 -8.70 16 7 C 0.05 0.78 6.97 71.94 0.50 1.28 16 8 C 0.07 1.33 6.67 86.21 0.58 1.91 16 9 N -1.00 -22.26 3.26 -490.13 -1.60 -23.86 16 10 S 2.62 77.01 4.86 -56.49 -0.27 76.74 16 11 O -0.97 -32.08 13.81 -127.65 -1.76 -33.84 16 12 O -0.99 -34.18 16.31 -127.65 -2.08 -36.26 16 13 C -0.61 -19.04 5.94 71.98 0.43 -18.61 16 14 C -0.10 -4.04 5.16 30.59 0.16 -3.88 16 15 C 0.02 0.81 4.28 29.85 0.13 0.93 16 16 C -0.63 -36.46 9.11 25.60 0.23 -36.22 16 17 H 0.05 2.92 7.74 -2.91 -0.02 2.89 16 18 C -0.04 -2.07 5.46 84.65 0.46 -1.60 16 19 N -0.93 -57.72 13.65 21.45 0.29 -57.42 16 20 Si 1.12 50.36 29.90 68.60 2.05 52.41 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 23 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 24 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 25 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.08 0.86 7.12 -2.39 -0.02 0.84 16 27 H 0.05 1.27 4.92 -2.38 -0.01 1.26 16 28 H 0.09 2.33 6.30 -2.39 -0.02 2.31 16 29 H 0.13 1.46 7.18 -2.39 -0.02 1.45 16 30 H 0.05 0.95 8.13 -2.38 -0.02 0.93 16 31 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.10 2.04 6.62 -2.38 -0.02 2.02 16 34 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.14 3.94 8.14 -2.39 -0.02 3.92 16 36 H 0.14 3.95 6.44 -2.39 -0.02 3.94 16 37 H 0.07 2.69 8.14 -2.38 -0.02 2.67 16 38 H 0.06 2.71 8.14 -2.38 -0.02 2.69 16 39 H 0.00 -0.06 8.01 -2.39 -0.02 -0.08 16 40 H 0.00 0.00 8.01 -2.39 -0.02 -0.02 16 41 H 0.26 15.91 7.22 -92.71 -0.67 15.24 16 Total: -1.00 -74.27 330.80 -0.01 -74.28 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 1.10 Total: 14.05 kcal Atomic # 6 Polarization: -61.24 SS G_CDS: 3.85 Total: -57.39 kcal Atomic # 7 Polarization: -79.98 SS G_CDS: -1.30 Total: -81.28 kcal Atomic # 8 Polarization: -73.36 SS G_CDS: -5.44 Total: -78.81 kcal Atomic # 14 Polarization: 50.36 SS G_CDS: 2.05 Total: 52.41 kcal Atomic # 16 Polarization: 77.01 SS G_CDS: -0.27 Total: 76.74 kcal Total: -74.27 -0.01 -74.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115593931.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.486 kcal (2) G-P(sol) polarization free energy of solvation -74.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds