Wall clock time and date at job start Tue Mar 31 2020 06:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 109.46629 * 2 1 4 4 C 1.38379 * 119.84686 * 269.72665 * 3 2 1 5 5 C 1.37940 * 120.15265 * 179.72801 * 4 3 2 6 6 C 1.39644 * 119.84195 * 0.56876 * 5 4 3 7 7 C 1.47734 * 120.14788 * 179.68145 * 6 5 4 8 8 O 1.21596 * 119.99672 * 147.78655 * 7 6 5 9 9 N 1.34774 * 119.99922 * 327.78806 * 7 6 5 10 10 C 1.36869 * 120.00220 * 3.69784 * 9 7 6 11 11 H 1.08000 * 120.00110 * 319.33480 * 10 9 7 12 12 C 1.39046 * 120.00008 * 139.32962 * 10 9 7 13 13 N 1.31370 * 120.00053 * 161.49071 * 12 10 9 14 14 Si 1.86798 * 120.00118 * 341.49502 * 12 10 9 15 15 H 1.48505 * 109.47160 * 95.26423 * 14 12 10 16 16 H 1.48506 * 109.47358 * 215.26035 * 14 12 10 17 17 H 1.48496 * 109.47194 * 335.26375 * 14 12 10 18 18 C 1.46501 * 119.99712 * 183.69725 * 9 7 6 19 19 C 1.50696 * 109.47190 * 90.00017 * 18 9 7 20 20 O 1.20827 * 119.99799 * 359.97438 * 19 18 9 21 21 O 1.34228 * 120.00221 * 180.02562 * 19 18 9 22 22 C 1.45202 * 117.00286 * 180.02562 * 21 19 18 23 23 C 1.39646 * 119.70068 * 359.70650 * 6 5 4 24 24 C 1.37934 * 119.84848 * 359.97438 * 23 6 5 25 25 H 1.08996 * 109.47312 * 60.00412 * 1 2 3 26 26 H 1.09000 * 109.47123 * 299.99990 * 1 2 3 27 27 H 1.09008 * 109.46714 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47312 * 119.99587 * 2 1 3 29 29 H 1.09000 * 109.47123 * 240.00010 * 2 1 3 30 30 H 1.08003 * 119.92406 * 0.02562 * 4 3 2 31 31 H 1.07997 * 120.07893 * 180.24958 * 5 4 3 32 32 H 0.96996 * 119.99670 * 180.02562 * 13 12 10 33 33 H 1.08997 * 109.47010 * 210.00263 * 18 9 7 34 34 H 1.09002 * 109.47020 * 330.00039 * 18 9 7 35 35 H 1.09002 * 109.46933 * 299.99882 * 22 21 19 36 36 H 1.08999 * 109.47273 * 59.99567 * 22 21 19 37 37 H 1.08998 * 109.47216 * 179.97438 * 22 21 19 38 38 H 1.08003 * 120.07284 * 179.97438 * 23 6 5 39 39 H 1.07994 * 119.92678 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2672 2.0682 -1.2002 5 6 2.7215 3.3706 -1.2076 6 6 2.9558 4.0317 -0.0001 7 6 3.4491 5.4243 -0.0001 8 8 3.1230 6.1848 0.8908 9 7 4.2606 5.8516 -0.9877 10 6 4.5668 5.0194 -2.0303 11 1 4.7695 3.9748 -1.8458 12 6 4.6167 5.5188 -3.3270 13 7 5.2471 4.8492 -4.2650 14 14 3.7874 7.1421 -3.7353 15 1 4.7841 8.2402 -3.6586 16 1 3.2249 7.0791 -5.1082 17 1 2.6939 7.3974 -2.7636 18 6 4.8150 7.2070 -0.9452 19 6 6.1323 7.1883 -0.2136 20 8 6.5636 6.1493 0.2275 21 8 6.8260 8.3258 -0.0511 22 6 8.0869 8.2327 0.6630 23 6 2.7220 3.3704 1.2074 24 6 2.2614 2.0703 1.2002 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 2.0898 1.5542 -2.1334 31 1 2.9006 3.8761 -2.1450 32 1 5.2823 5.1978 -5.1694 33 1 4.9690 7.5686 -1.9618 34 1 4.1204 7.8675 -0.4261 35 1 7.9076 7.8528 1.6688 36 1 8.7558 7.5550 0.1326 37 1 8.5440 9.2204 0.7234 38 1 2.9015 3.8759 2.1449 39 1 2.0798 1.5578 2.1333 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120740989.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:24 Heat of formation + Delta-G solvation = -80.416386 kcal Electronic energy + Delta-G solvation = -23487.614890 eV Core-core repulsion = 19975.138719 eV Total energy + Delta-G solvation = -3512.476171 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.14487 -39.32492 -37.92839 -35.94764 -35.00902 -33.73145 -32.15841 -30.45982 -29.71732 -28.41776 -26.55585 -25.27083 -23.76748 -22.06778 -21.24564 -20.60212 -19.28177 -17.95270 -17.30427 -16.72711 -15.94647 -15.61072 -15.43403 -15.22571 -14.72607 -14.54796 -13.91719 -13.50806 -13.39642 -13.22265 -13.16061 -12.85514 -12.81987 -12.51979 -12.42491 -11.96869 -11.88554 -11.60200 -11.36851 -11.11590 -11.01194 -10.74692 -10.57377 -10.38755 -10.33911 -10.13004 -9.90414 -9.40843 -8.83114 -8.34518 -8.07174 -7.99350 -6.61943 -4.25898 1.59743 2.04180 2.81166 2.91675 2.98555 3.12429 3.15958 3.69529 3.94331 4.17522 4.45881 4.83105 5.02595 5.12423 5.34347 5.41400 5.42760 5.46996 5.54652 5.55190 5.61330 5.70229 5.75227 5.76621 5.90363 5.92341 5.95954 6.09914 6.26772 6.33499 6.53129 6.68449 6.81127 6.95724 7.05431 7.13788 7.22516 7.58378 7.86165 8.11533 8.35637 8.73612 9.09526 9.41615 10.45956 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.016498 B = 0.005587 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.788218 B = 5010.729496 C = 5998.698727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.076 4.076 4 C -0.138 4.138 5 C -0.060 4.060 6 C -0.107 4.107 7 C 0.538 3.462 8 O -0.587 6.587 9 N -0.444 5.444 10 C -0.344 4.344 11 H 0.115 0.885 12 C 0.065 3.935 13 N -0.848 5.848 14 Si 0.860 3.140 15 H -0.268 1.268 16 H -0.279 1.279 17 H -0.254 1.254 18 C 0.107 3.893 19 C 0.449 3.551 20 O -0.487 6.487 21 O -0.369 6.369 22 C 0.037 3.963 23 C -0.073 4.073 24 C -0.141 4.141 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.119 0.881 31 H 0.167 0.833 32 H 0.279 0.721 33 H 0.106 0.894 34 H 0.115 0.885 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.095 0.905 38 H 0.121 0.879 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.201 -1.724 4.416 5.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 C -0.076 4.076 4 C -0.156 4.156 5 C -0.078 4.078 6 C -0.110 4.110 7 C 0.329 3.671 8 O -0.472 6.472 9 N -0.164 5.164 10 C -0.471 4.471 11 H 0.133 0.867 12 C -0.144 4.144 13 N -0.482 5.482 14 Si 0.686 3.314 15 H -0.194 1.194 16 H -0.205 1.205 17 H -0.177 1.177 18 C -0.018 4.018 19 C 0.289 3.711 20 O -0.372 6.372 21 O -0.286 6.286 22 C -0.058 4.058 23 C -0.092 4.092 24 C -0.159 4.159 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.137 0.863 31 H 0.184 0.816 32 H 0.089 0.911 33 H 0.123 0.877 34 H 0.133 0.867 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.113 0.887 38 H 0.139 0.861 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.117 -1.684 4.777 5.947 hybrid contribution 0.196 0.725 -0.355 0.831 sum -2.921 -0.959 4.422 5.386 Atomic orbital electron populations 1.21740 0.95054 1.01165 1.02291 1.20527 0.95908 0.93207 1.02459 1.19967 0.98460 0.95706 0.93499 1.21025 1.01979 0.95611 0.97026 1.22423 0.91633 0.93719 1.00047 1.19744 1.02901 0.94281 0.94028 1.18311 0.78804 0.87629 0.82344 1.90637 1.61036 1.56702 1.38822 1.43210 1.39872 1.11447 1.21855 1.19247 1.49367 0.94795 0.83727 0.86729 1.25390 0.95303 0.98158 0.95543 1.69713 1.35661 1.39560 1.03242 0.87140 0.81408 0.83535 0.79291 1.19449 1.20471 1.17721 1.21381 0.89969 0.89723 1.00733 1.24700 0.87113 0.81511 0.77794 1.90628 1.68675 1.32371 1.45529 1.86519 1.34189 1.37301 1.70609 1.23141 0.83383 1.02901 0.96341 1.21109 0.96727 0.94035 0.97322 1.20736 1.03160 0.94923 0.97125 0.92472 0.92660 0.92834 0.91447 0.91177 0.86302 0.81586 0.91084 0.87701 0.86723 0.92327 0.92168 0.88689 0.86059 0.86605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.89 37.16 0.37 -1.18 16 2 C -0.08 -1.01 6.06 -27.88 -0.17 -1.18 16 3 C -0.08 -1.19 5.14 -104.52 -0.54 -1.73 16 4 C -0.14 -2.40 9.68 -39.64 -0.38 -2.79 16 5 C -0.06 -1.23 7.75 -39.17 -0.30 -1.53 16 6 C -0.11 -2.33 5.52 -104.97 -0.58 -2.91 16 7 C 0.54 13.09 7.40 -12.38 -0.09 13.00 16 8 O -0.59 -15.05 16.32 5.28 0.09 -14.96 16 9 N -0.44 -10.80 1.62 -117.21 -0.19 -10.99 16 10 C -0.34 -8.71 6.58 -15.00 -0.10 -8.81 16 11 H 0.12 3.12 6.38 -52.49 -0.33 2.78 16 12 C 0.06 1.61 5.32 -17.45 -0.09 1.52 16 13 N -0.85 -22.15 13.95 55.50 0.77 -21.38 16 14 Si 0.86 18.69 24.92 -169.99 -4.24 14.45 16 15 H -0.27 -5.57 6.73 56.52 0.38 -5.18 16 16 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 17 H -0.25 -5.51 7.11 56.52 0.40 -5.10 16 18 C 0.11 2.38 4.80 -5.19 -0.02 2.35 16 19 C 0.45 9.93 8.02 36.00 0.29 10.22 16 20 O -0.49 -12.13 16.18 -18.75 -0.30 -12.43 16 21 O -0.37 -6.88 10.57 -39.25 -0.41 -7.29 16 22 C 0.04 0.53 10.56 101.05 1.07 1.59 16 23 C -0.07 -1.40 9.60 -39.17 -0.38 -1.78 16 24 C -0.14 -2.30 9.68 -39.64 -0.38 -2.68 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 28 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 29 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 30 H 0.12 1.82 8.06 -52.48 -0.42 1.40 16 31 H 0.17 3.66 5.40 -52.49 -0.28 3.37 16 32 H 0.28 6.76 8.31 -40.82 -0.34 6.43 16 33 H 0.11 2.27 3.39 -51.93 -0.18 2.10 16 34 H 0.11 2.37 7.37 -51.93 -0.38 1.98 16 35 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 36 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.12 2.28 7.96 -52.48 -0.42 1.87 16 39 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 LS Contribution 330.43 15.07 4.98 4.98 Total: -1.00 -30.19 330.43 -5.59 -35.78 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -4.97 Total: 7.73 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -1.32 Total: 4.10 kcal Atomic # 7 Polarization: -32.95 SS G_CDS: 0.59 Total: -32.37 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: -0.63 Total: -34.68 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -4.24 Total: 14.45 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.19 -5.59 -35.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120740989.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.633 kcal (2) G-P(sol) polarization free energy of solvation -30.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds