Wall clock time and date at job start Tue Mar 31 2020 06:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 109.46629 * 2 1 4 4 C 1.38379 * 119.84686 * 269.72665 * 3 2 1 5 5 C 1.37940 * 120.15265 * 179.72801 * 4 3 2 6 6 C 1.39644 * 119.84195 * 0.56876 * 5 4 3 7 7 C 1.47734 * 120.14788 * 179.68145 * 6 5 4 8 8 O 1.21596 * 119.99672 * 147.78655 * 7 6 5 9 9 N 1.34774 * 119.99922 * 327.78806 * 7 6 5 10 10 C 1.36869 * 120.00220 * 3.69784 * 9 7 6 11 11 H 1.08000 * 120.00110 * 319.33480 * 10 9 7 12 12 C 1.39046 * 120.00008 * 139.32962 * 10 9 7 13 13 N 1.31370 * 120.00053 * 161.49071 * 12 10 9 14 14 Si 1.86798 * 120.00118 * 341.49502 * 12 10 9 15 15 H 1.48505 * 109.47160 * 95.26423 * 14 12 10 16 16 H 1.48506 * 109.47358 * 215.26035 * 14 12 10 17 17 H 1.48496 * 109.47194 * 335.26375 * 14 12 10 18 18 C 1.46501 * 119.99712 * 183.69725 * 9 7 6 19 19 C 1.50696 * 109.47190 * 90.00017 * 18 9 7 20 20 O 1.20827 * 119.99799 * 359.97438 * 19 18 9 21 21 O 1.34228 * 120.00221 * 180.02562 * 19 18 9 22 22 C 1.45202 * 117.00286 * 180.02562 * 21 19 18 23 23 C 1.39646 * 119.70068 * 359.70650 * 6 5 4 24 24 C 1.37934 * 119.84848 * 359.97438 * 23 6 5 25 25 H 1.08996 * 109.47312 * 60.00412 * 1 2 3 26 26 H 1.09000 * 109.47123 * 299.99990 * 1 2 3 27 27 H 1.09008 * 109.46714 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47312 * 119.99587 * 2 1 3 29 29 H 1.09000 * 109.47123 * 240.00010 * 2 1 3 30 30 H 1.08003 * 119.92406 * 0.02562 * 4 3 2 31 31 H 1.07997 * 120.07893 * 180.24958 * 5 4 3 32 32 H 0.96996 * 119.99670 * 180.02562 * 13 12 10 33 33 H 1.08997 * 109.47010 * 210.00263 * 18 9 7 34 34 H 1.09002 * 109.47020 * 330.00039 * 18 9 7 35 35 H 1.09002 * 109.46933 * 299.99882 * 22 21 19 36 36 H 1.08999 * 109.47273 * 59.99567 * 22 21 19 37 37 H 1.08998 * 109.47216 * 179.97438 * 22 21 19 38 38 H 1.08003 * 120.07284 * 179.97438 * 23 6 5 39 39 H 1.07994 * 119.92678 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2672 2.0682 -1.2002 5 6 2.7215 3.3706 -1.2076 6 6 2.9558 4.0317 -0.0001 7 6 3.4491 5.4243 -0.0001 8 8 3.1230 6.1848 0.8908 9 7 4.2606 5.8516 -0.9877 10 6 4.5668 5.0194 -2.0303 11 1 4.7695 3.9748 -1.8458 12 6 4.6167 5.5188 -3.3270 13 7 5.2471 4.8492 -4.2650 14 14 3.7874 7.1421 -3.7353 15 1 4.7841 8.2402 -3.6586 16 1 3.2249 7.0791 -5.1082 17 1 2.6939 7.3974 -2.7636 18 6 4.8150 7.2070 -0.9452 19 6 6.1323 7.1883 -0.2136 20 8 6.5636 6.1493 0.2275 21 8 6.8260 8.3258 -0.0511 22 6 8.0869 8.2327 0.6630 23 6 2.7220 3.3704 1.2074 24 6 2.2614 2.0703 1.2002 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 2.0898 1.5542 -2.1334 31 1 2.9006 3.8761 -2.1450 32 1 5.2823 5.1978 -5.1694 33 1 4.9690 7.5686 -1.9618 34 1 4.1204 7.8675 -0.4261 35 1 7.9076 7.8528 1.6688 36 1 8.7558 7.5550 0.1326 37 1 8.5440 9.2204 0.7234 38 1 2.9015 3.8759 2.1449 39 1 2.0798 1.5578 2.1333 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120740989.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:23 Heat of formation + Delta-G solvation = -97.545823 kcal Electronic energy + Delta-G solvation = -23488.357678 eV Core-core repulsion = 19975.138719 eV Total energy + Delta-G solvation = -3513.218959 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.87330 -40.94220 -39.47184 -37.63861 -36.88082 -34.92962 -34.08874 -31.92805 -31.17572 -29.83278 -27.95950 -27.12258 -25.04333 -23.52805 -22.73552 -22.06702 -21.02550 -19.71485 -19.02351 -18.44508 -17.54037 -17.22103 -17.18753 -16.65311 -16.24536 -16.11157 -15.50617 -15.08811 -14.75605 -14.67730 -14.48087 -14.44376 -14.32343 -13.99812 -13.92980 -13.54428 -13.22067 -13.02051 -12.93875 -12.64121 -12.37080 -12.09215 -11.96320 -11.86189 -11.84686 -11.73494 -11.56673 -11.23630 -10.68264 -9.99900 -9.70558 -9.51704 -8.54394 -6.22460 0.09251 0.59424 1.06693 1.17232 1.31392 1.39574 1.45049 1.99957 2.12146 2.43250 2.78774 3.09559 3.77746 3.87932 3.88590 4.00491 4.02784 4.20084 4.21437 4.27334 4.28022 4.38822 4.56738 4.61508 4.63665 4.72794 4.79035 5.09796 5.13951 5.15038 5.19875 5.24003 5.26985 5.45307 5.53879 5.68868 5.76160 5.96484 6.08856 6.17179 6.66338 6.81404 7.17395 7.52549 8.56977 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.016498 B = 0.005587 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.788218 B = 5010.729496 C = 5998.698727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.082 4.082 3 C -0.062 4.062 4 C -0.142 4.142 5 C -0.073 4.073 6 C -0.144 4.144 7 C 0.528 3.472 8 O -0.610 6.610 9 N -0.451 5.451 10 C -0.342 4.342 11 H 0.084 0.916 12 C 0.032 3.968 13 N -0.885 5.885 14 Si 0.909 3.091 15 H -0.247 1.247 16 H -0.271 1.271 17 H -0.256 1.256 18 C 0.098 3.902 19 C 0.452 3.548 20 O -0.524 6.524 21 O -0.363 6.363 22 C 0.028 3.972 23 C -0.083 4.083 24 C -0.133 4.133 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.138 0.862 31 H 0.142 0.858 32 H 0.284 0.716 33 H 0.112 0.888 34 H 0.129 0.871 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.143 0.857 38 H 0.119 0.881 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.888 -2.155 4.967 6.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 C -0.062 4.062 4 C -0.160 4.160 5 C -0.092 4.092 6 C -0.147 4.147 7 C 0.321 3.679 8 O -0.497 6.497 9 N -0.171 5.171 10 C -0.469 4.469 11 H 0.102 0.898 12 C -0.174 4.174 13 N -0.520 5.520 14 Si 0.732 3.268 15 H -0.172 1.172 16 H -0.197 1.197 17 H -0.180 1.180 18 C -0.026 4.026 19 C 0.294 3.706 20 O -0.412 6.412 21 O -0.279 6.279 22 C -0.065 4.065 23 C -0.102 4.102 24 C -0.151 4.151 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.095 0.905 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.156 0.844 31 H 0.160 0.840 32 H 0.095 0.905 33 H 0.130 0.870 34 H 0.147 0.853 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.161 0.839 38 H 0.137 0.863 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.787 -2.091 5.321 6.858 hybrid contribution 0.447 0.785 -0.445 1.007 sum -3.340 -1.306 4.876 6.053 Atomic orbital electron populations 1.21729 0.93735 1.02639 1.01938 1.20633 0.96855 0.90408 1.04016 1.20434 0.95997 0.97437 0.92380 1.21260 1.01387 0.94399 0.98909 1.22189 0.93205 0.95156 0.98615 1.19790 1.05589 0.93725 0.95601 1.18841 0.78459 0.88691 0.81918 1.90585 1.62002 1.57584 1.39495 1.43253 1.40123 1.12044 1.21702 1.18939 1.49390 0.93984 0.84564 0.89807 1.25885 0.95319 1.01197 0.94976 1.69773 1.36986 1.41449 1.03807 0.86359 0.80784 0.80492 0.79140 1.17238 1.19677 1.18018 1.21507 0.90683 0.88961 1.01472 1.24577 0.87164 0.81791 0.77114 1.90609 1.69590 1.33792 1.47184 1.86487 1.35609 1.35202 1.70645 1.23577 0.81412 1.05829 0.95717 1.21246 0.97283 0.95436 0.96256 1.21124 1.01326 0.93595 0.99020 0.93225 0.92700 0.90493 0.89436 0.90185 0.84415 0.84012 0.90542 0.87026 0.85339 0.92269 0.92464 0.83946 0.86299 0.82933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.89 71.98 0.71 -1.83 16 2 C -0.08 -1.67 6.06 29.85 0.18 -1.49 16 3 C -0.06 -1.81 5.14 -19.80 -0.10 -1.92 16 4 C -0.14 -4.86 9.68 22.23 0.22 -4.65 16 5 C -0.07 -3.12 7.75 22.54 0.17 -2.94 16 6 C -0.14 -6.55 5.52 -20.09 -0.11 -6.66 16 7 C 0.53 26.75 7.40 86.75 0.64 27.39 16 8 O -0.61 -32.23 16.32 -4.02 -0.07 -32.30 16 9 N -0.45 -22.69 1.62 -643.01 -1.04 -23.73 16 10 C -0.34 -18.03 6.58 84.10 0.55 -17.47 16 11 H 0.08 4.87 6.38 -2.91 -0.02 4.85 16 12 C 0.03 1.63 5.32 84.96 0.45 2.08 16 13 N -0.88 -47.34 13.95 21.68 0.30 -47.04 16 14 Si 0.91 38.44 24.92 68.60 1.71 40.15 16 15 H -0.25 -9.59 6.73 99.48 0.67 -8.92 16 16 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 17 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 18 C 0.10 4.41 4.80 85.63 0.41 4.82 16 19 C 0.45 20.13 8.02 71.23 0.57 20.71 16 20 O -0.52 -26.71 16.18 21.96 0.36 -26.35 16 21 O -0.36 -13.12 10.57 -51.40 -0.54 -13.66 16 22 C 0.03 0.75 10.56 113.37 1.20 1.94 16 23 C -0.08 -3.23 9.60 22.54 0.22 -3.01 16 24 C -0.13 -4.07 9.68 22.23 0.22 -3.85 16 25 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.09 1.50 8.08 -2.39 -0.02 1.48 16 29 H 0.08 1.53 8.08 -2.39 -0.02 1.51 16 30 H 0.14 4.11 8.06 -2.91 -0.02 4.08 16 31 H 0.14 6.66 5.40 -2.91 -0.02 6.64 16 32 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 33 H 0.11 4.78 3.39 -2.39 -0.01 4.77 16 34 H 0.13 5.32 7.37 -2.39 -0.02 5.31 16 35 H 0.06 1.61 8.13 -2.39 -0.02 1.59 16 36 H 0.06 1.60 8.13 -2.39 -0.02 1.58 16 37 H 0.14 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.12 4.56 7.96 -2.91 -0.02 4.54 16 39 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -67.90 330.43 7.08 -60.83 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: 1.03 Total: 28.99 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 5.33 Total: 13.11 kcal Atomic # 7 Polarization: -70.03 SS G_CDS: -0.74 Total: -70.77 kcal Atomic # 8 Polarization: -72.06 SS G_CDS: -0.25 Total: -72.31 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 1.71 Total: 40.15 kcal Total: -67.90 7.08 -60.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120740989.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.720 kcal (2) G-P(sol) polarization free energy of solvation -67.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds