Wall clock time and date at job start Tue Mar 31 2020 06:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 110.80592 * 2 1 4 4 C 1.34777 * 119.99983 * 303.62453 * 3 2 1 5 5 O 1.21587 * 119.99818 * 0.02562 * 4 3 2 6 6 C 1.47536 * 120.00203 * 180.02562 * 4 3 2 7 7 C 1.39672 * 120.19400 * 0.02562 * 6 4 3 8 8 C 1.37826 * 119.91385 * 180.02562 * 7 6 4 9 9 C 1.38573 * 120.32940 * 0.02562 * 8 7 6 10 10 C 1.38022 * 120.39696 * 0.02562 * 9 8 7 11 11 C 1.38836 * 120.07415 * 359.68328 * 10 9 8 12 12 O 1.35521 * 120.16051 * 180.28899 * 11 10 9 13 13 C 1.34810 * 117.00082 * 354.40252 * 12 11 10 14 14 H 1.07998 * 120.00157 * 5.04664 * 13 12 11 15 15 C 1.38705 * 119.99709 * 185.04861 * 13 12 11 16 16 N 1.31520 * 119.99653 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 120.00104 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46997 * 89.99935 * 17 15 13 19 19 H 1.48499 * 109.47446 * 209.99829 * 17 15 13 20 20 H 1.48498 * 109.47207 * 330.00422 * 17 15 13 21 21 C 1.54810 * 110.90794 * 123.62786 * 2 1 3 22 22 C 1.54096 * 104.19193 * 139.11006 * 21 2 1 23 23 O 1.43748 * 107.41695 * 1.95760 * 22 21 2 24 24 C 1.44572 * 106.87000 * 333.66515 * 23 22 21 25 25 H 1.09001 * 109.47263 * 296.37176 * 1 2 3 26 26 H 1.09003 * 109.46784 * 56.37393 * 1 2 3 27 27 H 1.09002 * 109.47284 * 176.36811 * 1 2 3 28 28 H 0.97001 * 120.00001 * 123.62926 * 3 2 1 29 29 H 1.07994 * 120.04142 * 0.02721 * 7 6 4 30 30 H 1.08003 * 119.83177 * 180.02562 * 8 7 6 31 31 H 1.07993 * 119.79961 * 180.02562 * 9 8 7 32 32 H 1.08001 * 119.95964 * 179.97438 * 10 9 8 33 33 H 0.96995 * 120.00023 * 180.02562 * 16 15 13 34 34 H 1.09002 * 110.48685 * 20.43378 * 21 2 1 35 35 H 1.09001 * 110.49033 * 257.79355 * 21 2 1 36 36 H 1.09007 * 109.87884 * 121.45029 * 22 21 2 37 37 H 1.08999 * 109.88332 * 242.45757 * 22 21 2 38 38 H 1.08996 * 110.50742 * 281.38366 * 24 23 22 39 39 H 1.09000 * 110.77145 * 158.50876 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0503 1.3694 0.0000 4 6 1.6855 2.2290 -0.9719 5 8 0.9241 1.8679 -1.8484 6 6 2.2100 3.6079 -0.9723 7 6 3.0852 4.0269 0.0323 8 6 3.5713 5.3166 0.0267 9 6 3.1956 6.2016 -0.9712 10 6 2.3306 5.8019 -1.9698 11 6 1.8357 4.5049 -1.9836 12 8 0.9909 4.1089 -2.9665 13 6 0.5777 5.0530 -3.8356 14 1 0.9829 6.0525 -3.7801 15 6 -0.3677 4.7405 -4.8012 16 7 -0.7704 5.6614 -5.6495 17 14 -1.0680 3.0115 -4.8978 18 1 -2.2765 2.9183 -4.0398 19 1 -1.4340 2.7034 -6.3036 20 1 -0.0502 2.0382 -4.4266 21 6 2.0824 -0.8009 1.2041 22 6 3.2723 -1.5874 0.6208 23 8 3.3962 -1.2169 -0.7625 24 6 2.0838 -0.8023 -1.2050 25 1 -0.3634 0.4565 0.9207 26 1 -0.3633 0.5691 -0.8557 27 1 -0.3634 -1.0256 -0.0651 28 1 2.6575 1.6576 0.6995 29 1 3.3808 3.3411 0.8125 30 1 4.2483 5.6390 0.8039 31 1 3.5819 7.2100 -0.9676 32 1 2.0421 6.4977 -2.7439 33 1 -1.4318 5.4431 -6.3245 34 1 1.3248 -1.4842 1.5878 35 1 2.4203 -0.1247 1.9895 36 1 4.1857 -1.3294 1.1569 37 1 3.0847 -2.6580 0.7025 38 1 1.4574 -1.6707 -1.4085 39 1 2.1564 -0.1673 -2.0880 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127598438.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:58 Heat of formation + Delta-G solvation = -96.891539 kcal Electronic energy + Delta-G solvation = -23816.206417 eV Core-core repulsion = 20303.015829 eV Total energy + Delta-G solvation = -3513.190588 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.72606 -40.77953 -39.28079 -38.13932 -35.82098 -34.51834 -33.25499 -31.47022 -30.79913 -30.51166 -27.38266 -27.25575 -25.06930 -23.72660 -23.06845 -21.86301 -20.80329 -19.77385 -19.48871 -18.13818 -17.63346 -16.89779 -16.72997 -16.47957 -16.03695 -15.96011 -15.82933 -15.48165 -15.28380 -15.08083 -14.46220 -14.22415 -14.20089 -14.02648 -13.77596 -13.30475 -13.09112 -12.87268 -12.74667 -12.58431 -12.53435 -12.38780 -12.32640 -12.02539 -11.73697 -11.49004 -10.97212 -10.75483 -10.50626 -10.06040 -9.80963 -9.14495 -8.58079 -6.26694 0.06239 0.64980 1.24301 1.29253 1.57609 2.03718 2.18560 2.29028 2.75680 2.95510 3.02952 3.17217 3.34948 3.76360 3.91483 3.98445 4.01716 4.18027 4.24987 4.27895 4.45701 4.48432 4.61610 4.69261 4.73783 4.75950 4.82243 4.86621 4.97141 5.04227 5.07101 5.26696 5.32685 5.47776 5.60530 5.62041 5.69259 5.83309 5.88462 6.15717 6.67127 6.79182 7.42919 7.58907 8.52461 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.014586 B = 0.006270 C = 0.004692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.184768 B = 4464.914546 C = 5965.590971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.142 3.858 3 N -0.703 5.703 4 C 0.557 3.443 5 O -0.560 6.560 6 C -0.234 4.234 7 C -0.031 4.031 8 C -0.190 4.190 9 C -0.044 4.044 10 C -0.252 4.252 11 C 0.161 3.839 12 O -0.207 6.207 13 C -0.402 4.402 14 H 0.090 0.910 15 C 0.025 3.975 16 N -0.912 5.912 17 Si 0.957 3.043 18 H -0.275 1.275 19 H -0.268 1.268 20 H -0.264 1.264 21 C -0.141 4.141 22 C 0.037 3.963 23 O -0.400 6.400 24 C 0.040 3.960 25 H 0.072 0.928 26 H 0.044 0.956 27 H 0.086 0.914 28 H 0.412 0.588 29 H 0.165 0.835 30 H 0.166 0.834 31 H 0.150 0.850 32 H 0.114 0.886 33 H 0.285 0.715 34 H 0.114 0.886 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.590 -11.352 19.580 24.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.055 3.945 3 N -0.358 5.358 4 C 0.347 3.653 5 O -0.440 6.440 6 C -0.238 4.238 7 C -0.050 4.050 8 C -0.208 4.208 9 C -0.062 4.062 10 C -0.271 4.271 11 C 0.108 3.892 12 O -0.111 6.111 13 C -0.478 4.478 14 H 0.107 0.893 15 C -0.175 4.175 16 N -0.552 5.552 17 Si 0.781 3.219 18 H -0.201 1.201 19 H -0.193 1.193 20 H -0.189 1.189 21 C -0.179 4.179 22 C -0.039 4.039 23 O -0.320 6.320 24 C -0.037 4.037 25 H 0.091 0.909 26 H 0.063 0.937 27 H 0.105 0.895 28 H 0.250 0.750 29 H 0.182 0.818 30 H 0.184 0.816 31 H 0.168 0.832 32 H 0.132 0.868 33 H 0.095 0.905 34 H 0.132 0.868 35 H 0.126 0.874 36 H 0.119 0.881 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.005 -11.807 18.592 23.434 hybrid contribution -0.573 0.196 -0.694 0.921 sum 7.432 -11.610 17.898 22.592 Atomic orbital electron populations 1.22072 0.93223 1.03431 1.02872 1.21833 0.94675 0.81783 0.96172 1.45663 1.50237 1.10922 1.29007 1.18315 0.80285 0.85333 0.81359 1.90799 1.36641 1.78537 1.37989 1.19341 1.10179 0.94090 1.00201 1.21351 0.91811 0.97070 0.94729 1.21229 1.04893 0.93325 1.01327 1.21435 0.92487 1.00640 0.91625 1.21330 1.05685 0.95962 1.04102 1.19767 0.89014 0.93242 0.87219 1.83762 1.55488 1.36521 1.35377 1.20878 1.23700 0.92699 1.10527 0.89255 1.25051 0.95816 1.02222 0.94409 1.69686 1.31765 1.34992 1.18779 0.85379 0.79160 0.80217 0.77096 1.20090 1.19321 1.18870 1.23269 0.98771 0.99514 0.96330 1.23449 0.99683 0.99526 0.81266 1.88928 1.29342 1.86541 1.27166 1.23916 0.84517 0.97640 0.97652 0.90902 0.93725 0.89499 0.74965 0.81808 0.81618 0.83230 0.86823 0.90495 0.86757 0.87353 0.88085 0.90675 0.90174 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.01 8.47 71.98 0.61 -3.40 16 2 C 0.14 3.39 0.93 4.91 0.00 3.40 16 3 N -0.70 -19.01 5.13 -420.18 -2.16 -21.17 16 4 C 0.56 21.96 7.13 86.70 0.62 22.58 16 5 O -0.56 -27.74 11.97 16.91 0.20 -27.54 16 6 C -0.23 -9.19 5.89 -19.99 -0.12 -9.31 16 7 C -0.03 -0.85 9.54 22.52 0.21 -0.63 16 8 C -0.19 -4.73 10.02 22.25 0.22 -4.50 16 9 C -0.04 -1.35 10.03 22.30 0.22 -1.13 16 10 C -0.25 -10.83 9.16 22.36 0.20 -10.63 16 11 C 0.16 7.83 6.66 22.91 0.15 7.98 16 12 O -0.21 -12.11 6.67 0.88 0.01 -12.10 16 13 C -0.40 -24.73 9.95 67.93 0.68 -24.05 16 14 H 0.09 5.58 5.44 -2.91 -0.02 5.57 16 15 C 0.03 1.54 5.49 84.85 0.47 2.00 16 16 N -0.91 -56.26 13.96 21.62 0.30 -55.96 16 17 Si 0.96 51.11 28.62 68.60 1.96 53.07 16 18 H -0.28 -14.43 7.11 99.48 0.71 -13.72 16 19 H -0.27 -13.19 7.11 99.48 0.71 -12.48 16 20 H -0.26 -15.09 7.11 99.48 0.71 -14.39 16 21 C -0.14 -1.87 6.28 31.58 0.20 -1.67 16 22 C 0.04 0.57 7.69 72.35 0.56 1.13 16 23 O -0.40 -10.73 11.54 -148.98 -1.72 -12.44 16 24 C 0.04 1.16 6.62 72.67 0.48 1.65 16 25 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.04 1.59 5.93 -2.39 -0.01 1.58 16 27 H 0.09 1.72 8.09 -2.39 -0.02 1.70 16 28 H 0.41 7.84 6.33 -92.71 -0.59 7.25 16 29 H 0.16 2.75 6.40 -2.91 -0.02 2.74 16 30 H 0.17 2.58 8.06 -2.91 -0.02 2.56 16 31 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 32 H 0.11 5.37 5.64 -2.91 -0.02 5.35 16 33 H 0.29 16.21 8.31 -92.71 -0.77 15.44 16 34 H 0.11 1.03 7.86 -2.39 -0.02 1.02 16 35 H 0.11 0.94 7.77 -2.39 -0.02 0.92 16 36 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.08 2.02 8.01 -2.39 -0.02 2.00 16 39 H 0.06 2.32 6.84 -2.39 -0.02 2.30 16 Total: -1.00 -81.30 320.22 3.61 -77.69 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.50 Total: 15.03 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: 4.51 Total: -16.58 kcal Atomic # 7 Polarization: -75.27 SS G_CDS: -1.85 Total: -77.13 kcal Atomic # 8 Polarization: -50.58 SS G_CDS: -1.51 Total: -52.09 kcal Atomic # 14 Polarization: 51.11 SS G_CDS: 1.96 Total: 53.07 kcal Total: -81.30 3.61 -77.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127598438.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.202 kcal (2) G-P(sol) polarization free energy of solvation -81.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds