Wall clock time and date at job start Tue Mar 31 2020 06:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47335 * 2 1 4 4 C 1.37958 * 120.07737 * 266.23659 * 3 2 1 5 5 C 1.38354 * 120.15474 * 179.74283 * 4 3 2 6 6 C 1.38400 * 120.30155 * 0.28284 * 5 4 3 7 7 C 1.37914 * 120.15486 * 359.97438 * 6 5 4 8 8 C 1.39629 * 120.07964 * 86.51241 * 3 2 1 9 9 C 1.47726 * 120.14683 * 0.02562 * 8 3 2 10 10 O 1.21592 * 120.00027 * 52.76328 * 9 8 3 11 11 N 1.34777 * 119.99627 * 232.75987 * 9 8 3 12 12 C 1.36873 * 120.00427 * 4.35280 * 11 9 8 13 13 H 1.07999 * 119.99787 * 21.05646 * 12 11 9 14 14 C 1.39048 * 120.00238 * 201.05627 * 12 11 9 15 15 N 1.31366 * 119.99942 * 5.12894 * 14 12 11 16 16 Si 1.86800 * 119.99893 * 185.12922 * 14 12 11 17 17 H 1.48495 * 109.47013 * 90.00160 * 16 14 12 18 18 H 1.48504 * 109.46856 * 210.00119 * 16 14 12 19 19 H 1.48500 * 109.47091 * 329.99667 * 16 14 12 20 20 C 1.46502 * 119.99631 * 184.35490 * 11 9 8 21 21 C 1.50707 * 109.47187 * 83.87306 * 20 11 9 22 22 O 1.20826 * 119.99912 * 359.97438 * 21 20 11 23 23 O 1.34229 * 120.00109 * 179.97438 * 21 20 11 24 24 C 1.45196 * 117.00102 * 180.02562 * 23 21 20 25 25 H 1.08994 * 109.47312 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47310 * 300.00287 * 1 2 3 27 27 H 1.09007 * 109.46635 * 60.00491 * 1 2 3 28 28 H 1.08998 * 109.47310 * 239.99713 * 2 1 3 29 29 H 1.09005 * 109.46962 * 119.99941 * 2 1 3 30 30 H 1.08005 * 119.92523 * 0.02562 * 4 3 2 31 31 H 1.08000 * 119.84954 * 180.25535 * 5 4 3 32 32 H 1.08003 * 119.92277 * 179.97438 * 6 5 4 33 33 H 1.07998 * 120.07816 * 179.97438 * 7 6 5 34 34 H 0.96992 * 119.99836 * 179.97438 * 15 14 12 35 35 H 1.09005 * 109.47185 * 203.86988 * 20 11 9 36 36 H 1.08997 * 109.47556 * 323.87337 * 20 11 9 37 37 H 1.08999 * 109.47240 * 180.02562 * 24 23 21 38 38 H 1.09002 * 109.46947 * 299.99955 * 24 23 21 39 39 H 1.09001 * 109.47412 * 59.99897 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3367 2.0465 -1.1912 5 6 2.7930 3.3526 -1.1935 6 6 2.9530 4.0385 -0.0020 7 6 2.6575 3.4234 1.1965 8 6 2.1964 2.1051 1.2060 9 6 1.8788 1.4393 2.4859 10 8 2.3711 0.3587 2.7477 11 7 1.0435 2.0297 3.3635 12 6 0.4199 3.2022 3.0323 13 1 0.3113 3.4817 1.9947 14 6 -0.0739 4.0335 4.0315 15 7 0.1460 3.7451 5.2941 16 14 -1.0498 5.5605 3.5785 17 1 -2.4925 5.2189 3.4942 18 1 -0.8478 6.6031 4.6166 19 1 -0.5849 6.0735 2.2648 20 6 0.8031 1.4164 4.6721 21 6 1.8977 1.8215 5.6255 22 8 2.7876 2.5475 5.2502 23 8 1.8840 1.3757 6.8915 24 6 2.9696 1.8068 7.7540 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 2.2142 1.5171 -2.1246 31 1 3.0259 3.8391 -2.1292 32 1 3.3099 5.0578 -0.0109 33 1 2.7831 3.9596 2.1255 34 1 -0.1981 4.3252 5.9911 35 1 -0.1589 1.7523 5.0595 36 1 0.7944 0.3314 4.5688 37 1 2.8383 1.3758 8.7465 38 1 3.9197 1.4735 7.3363 39 1 2.9662 2.8944 7.8264 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129401214.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:26 Heat of formation + Delta-G solvation = -87.864656 kcal Electronic energy + Delta-G solvation = -24305.253601 eV Core-core repulsion = 20792.454449 eV Total energy + Delta-G solvation = -3512.799153 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.79568 -39.03016 -37.49357 -35.45913 -34.70550 -33.49430 -31.63164 -30.67845 -28.96369 -28.29170 -26.28049 -24.93556 -23.41055 -22.58620 -20.80525 -20.03812 -19.29025 -17.62957 -16.60454 -16.32064 -15.55563 -15.48780 -15.21580 -15.02316 -14.65739 -14.34043 -13.81349 -13.32831 -13.14844 -13.02842 -12.76812 -12.62761 -12.44475 -12.22596 -11.70166 -11.59929 -11.37039 -11.28353 -11.24977 -10.99550 -10.79399 -10.60774 -10.52407 -10.43620 -10.27798 -9.84817 -9.60594 -9.05190 -8.67250 -8.24107 -8.10239 -7.99595 -6.51196 -4.08605 1.69875 1.94601 3.06068 3.15442 3.18565 3.47413 3.68000 3.93998 4.04133 4.34741 4.66516 4.99474 5.23408 5.32955 5.53105 5.61121 5.68576 5.74726 5.77208 5.85176 5.93123 5.98563 6.02101 6.11404 6.20846 6.31281 6.40452 6.51651 6.55041 6.62064 6.75376 6.78652 6.95285 7.04222 7.22613 7.29822 7.43664 7.51746 7.56814 8.22416 8.92219 9.07163 9.29211 9.69082 10.53027 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.013630 B = 0.007273 C = 0.005871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.786876 B = 3849.172469 C = 4768.360489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 C -0.049 4.049 4 C -0.135 4.135 5 C -0.116 4.116 6 C -0.140 4.140 7 C -0.063 4.063 8 C -0.081 4.081 9 C 0.512 3.488 10 O -0.594 6.594 11 N -0.420 5.420 12 C -0.321 4.321 13 H 0.104 0.896 14 C 0.038 3.962 15 N -0.882 5.882 16 Si 0.929 3.071 17 H -0.276 1.276 18 H -0.283 1.283 19 H -0.268 1.268 20 C 0.153 3.847 21 C 0.489 3.511 22 O -0.509 6.509 23 O -0.373 6.373 24 C 0.043 3.957 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.048 0.952 28 H 0.062 0.938 29 H 0.098 0.902 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.134 0.866 34 H 0.274 0.726 35 H 0.138 0.862 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.050 0.950 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.044 -1.486 -4.615 4.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.136 4.136 3 C -0.050 4.050 4 C -0.153 4.153 5 C -0.135 4.135 6 C -0.158 4.158 7 C -0.081 4.081 8 C -0.084 4.084 9 C 0.302 3.698 10 O -0.481 6.481 11 N -0.137 5.137 12 C -0.449 4.449 13 H 0.122 0.878 14 C -0.166 4.166 15 N -0.522 5.522 16 Si 0.756 3.244 17 H -0.201 1.201 18 H -0.208 1.208 19 H -0.192 1.192 20 C 0.028 3.972 21 C 0.331 3.669 22 O -0.395 6.395 23 O -0.290 6.290 24 C -0.051 4.051 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.116 0.884 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.152 0.848 34 H 0.085 0.915 35 H 0.156 0.844 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.068 0.932 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.495 -1.682 -4.358 4.698 hybrid contribution -0.263 1.315 0.078 1.343 sum 0.232 -0.367 -4.280 4.302 Atomic orbital electron populations 1.21682 0.94984 1.01125 1.02079 1.20733 0.96100 0.92970 1.03818 1.19886 0.97234 0.96031 0.91840 1.20811 1.02238 0.95301 0.96931 1.21085 1.00026 0.94721 0.97646 1.21013 1.02460 0.99880 0.92497 1.21413 0.94935 0.93188 0.98596 1.19775 1.00963 0.94382 0.93309 1.18073 0.80432 0.86160 0.85179 1.90594 1.55417 1.22795 1.79270 1.43266 1.37632 1.21711 1.11129 1.19740 1.34074 0.96534 0.94514 0.87798 1.25284 0.97679 0.98960 0.94670 1.69662 1.44253 1.38759 0.99495 0.85862 0.79489 0.80518 0.78551 1.20142 1.20808 1.19211 1.20637 0.97815 0.96420 0.82349 1.23961 0.85661 0.76710 0.80555 1.90505 1.37402 1.34308 1.77265 1.86460 1.49056 1.69456 1.24077 1.22935 0.89161 1.00310 0.92717 0.92896 0.92076 0.93246 0.91941 0.88410 0.86561 0.86748 0.86431 0.84831 0.91545 0.84419 0.90407 0.89565 0.93158 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.89 37.16 0.37 -1.88 16 2 C -0.10 -1.72 5.61 -27.88 -0.16 -1.87 16 3 C -0.05 -0.92 5.17 -104.21 -0.54 -1.46 16 4 C -0.13 -2.16 9.67 -39.64 -0.38 -2.55 16 5 C -0.12 -1.79 10.04 -39.48 -0.40 -2.18 16 6 C -0.14 -2.39 10.03 -39.64 -0.40 -2.79 16 7 C -0.06 -1.30 8.02 -39.17 -0.31 -1.61 16 8 C -0.08 -1.78 4.72 -104.97 -0.50 -2.28 16 9 C 0.51 12.62 6.36 -12.38 -0.08 12.54 16 10 O -0.59 -15.66 14.68 5.28 0.08 -15.58 16 11 N -0.42 -10.45 2.18 -117.21 -0.26 -10.71 16 12 C -0.32 -7.90 7.96 -15.00 -0.12 -8.02 16 13 H 0.10 2.51 6.31 -52.49 -0.33 2.18 16 14 C 0.04 0.91 5.23 -17.45 -0.09 0.82 16 15 N -0.88 -22.14 8.74 55.50 0.48 -21.66 16 16 Si 0.93 19.25 29.56 -169.99 -5.02 14.22 16 17 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 18 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 19 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 20 C 0.15 3.66 5.17 -5.19 -0.03 3.64 16 21 C 0.49 12.10 6.10 36.01 0.22 12.32 16 22 O -0.51 -14.01 15.91 -18.75 -0.30 -14.30 16 23 O -0.37 -8.07 10.57 -39.25 -0.41 -8.48 16 24 C 0.04 0.76 10.56 101.05 1.07 1.82 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.91 8.06 -51.93 -0.42 0.49 16 29 H 0.10 1.96 5.77 -51.93 -0.30 1.66 16 30 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 31 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.12 1.70 8.06 -52.48 -0.42 1.28 16 33 H 0.13 3.00 7.57 -52.49 -0.40 2.61 16 34 H 0.27 6.62 8.31 -40.82 -0.34 6.29 16 35 H 0.14 3.29 6.14 -51.93 -0.32 2.97 16 36 H 0.08 1.76 7.55 -51.93 -0.39 1.36 16 37 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 39 H 0.05 0.98 8.13 -51.93 -0.42 0.56 16 LS Contribution 330.19 15.07 4.98 4.98 Total: -1.00 -30.09 330.19 -6.90 -36.99 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -5.10 Total: 8.06 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -1.34 Total: 6.49 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: 0.23 Total: -32.36 kcal Atomic # 8 Polarization: -37.74 SS G_CDS: -0.64 Total: -38.37 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.22 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.09 -6.90 -36.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129401214.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.879 kcal (2) G-P(sol) polarization free energy of solvation -30.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds