Wall clock time and date at job start Tue Mar 31 2020 06:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47335 * 2 1 4 4 C 1.37958 * 120.07737 * 266.23659 * 3 2 1 5 5 C 1.38354 * 120.15474 * 179.74283 * 4 3 2 6 6 C 1.38400 * 120.30155 * 0.28284 * 5 4 3 7 7 C 1.37914 * 120.15486 * 359.97438 * 6 5 4 8 8 C 1.39629 * 120.07964 * 86.51241 * 3 2 1 9 9 C 1.47726 * 120.14683 * 0.02562 * 8 3 2 10 10 O 1.21592 * 120.00027 * 52.76328 * 9 8 3 11 11 N 1.34777 * 119.99627 * 232.75987 * 9 8 3 12 12 C 1.36873 * 120.00427 * 4.35280 * 11 9 8 13 13 H 1.07999 * 119.99787 * 21.05646 * 12 11 9 14 14 C 1.39048 * 120.00238 * 201.05627 * 12 11 9 15 15 N 1.31366 * 119.99942 * 5.12894 * 14 12 11 16 16 Si 1.86800 * 119.99893 * 185.12922 * 14 12 11 17 17 H 1.48495 * 109.47013 * 90.00160 * 16 14 12 18 18 H 1.48504 * 109.46856 * 210.00119 * 16 14 12 19 19 H 1.48500 * 109.47091 * 329.99667 * 16 14 12 20 20 C 1.46502 * 119.99631 * 184.35490 * 11 9 8 21 21 C 1.50707 * 109.47187 * 83.87306 * 20 11 9 22 22 O 1.20826 * 119.99912 * 359.97438 * 21 20 11 23 23 O 1.34229 * 120.00109 * 179.97438 * 21 20 11 24 24 C 1.45196 * 117.00102 * 180.02562 * 23 21 20 25 25 H 1.08994 * 109.47312 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47310 * 300.00287 * 1 2 3 27 27 H 1.09007 * 109.46635 * 60.00491 * 1 2 3 28 28 H 1.08998 * 109.47310 * 239.99713 * 2 1 3 29 29 H 1.09005 * 109.46962 * 119.99941 * 2 1 3 30 30 H 1.08005 * 119.92523 * 0.02562 * 4 3 2 31 31 H 1.08000 * 119.84954 * 180.25535 * 5 4 3 32 32 H 1.08003 * 119.92277 * 179.97438 * 6 5 4 33 33 H 1.07998 * 120.07816 * 179.97438 * 7 6 5 34 34 H 0.96992 * 119.99836 * 179.97438 * 15 14 12 35 35 H 1.09005 * 109.47185 * 203.86988 * 20 11 9 36 36 H 1.08997 * 109.47556 * 323.87337 * 20 11 9 37 37 H 1.08999 * 109.47240 * 180.02562 * 24 23 21 38 38 H 1.09002 * 109.46947 * 299.99955 * 24 23 21 39 39 H 1.09001 * 109.47412 * 59.99897 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3367 2.0465 -1.1912 5 6 2.7930 3.3526 -1.1935 6 6 2.9530 4.0385 -0.0020 7 6 2.6575 3.4234 1.1965 8 6 2.1964 2.1051 1.2060 9 6 1.8788 1.4393 2.4859 10 8 2.3711 0.3587 2.7477 11 7 1.0435 2.0297 3.3635 12 6 0.4199 3.2022 3.0323 13 1 0.3113 3.4817 1.9947 14 6 -0.0739 4.0335 4.0315 15 7 0.1460 3.7451 5.2941 16 14 -1.0498 5.5605 3.5785 17 1 -2.4925 5.2189 3.4942 18 1 -0.8478 6.6031 4.6166 19 1 -0.5849 6.0735 2.2648 20 6 0.8031 1.4164 4.6721 21 6 1.8977 1.8215 5.6255 22 8 2.7876 2.5475 5.2502 23 8 1.8840 1.3757 6.8915 24 6 2.9696 1.8068 7.7540 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 2.2142 1.5171 -2.1246 31 1 3.0259 3.8391 -2.1292 32 1 3.3099 5.0578 -0.0109 33 1 2.7831 3.9596 2.1255 34 1 -0.1981 4.3252 5.9911 35 1 -0.1589 1.7523 5.0595 36 1 0.7944 0.3314 4.5688 37 1 2.8383 1.3758 8.7465 38 1 3.9197 1.4735 7.3363 39 1 2.9662 2.8944 7.8264 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129401214.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:26 Heat of formation + Delta-G solvation = -104.117964 kcal Electronic energy + Delta-G solvation = -24305.958397 eV Core-core repulsion = 20792.454449 eV Total energy + Delta-G solvation = -3513.503949 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.57125 -40.74976 -39.13303 -37.32687 -36.62165 -34.86803 -33.51470 -32.20576 -30.36797 -29.96271 -27.90524 -26.76880 -24.82079 -24.06843 -22.43442 -21.64823 -21.08360 -19.33498 -18.50581 -18.14611 -17.33710 -17.07969 -16.84605 -16.52037 -16.31097 -16.14871 -15.34964 -14.88035 -14.64960 -14.49921 -14.36695 -14.19924 -14.00306 -13.90050 -13.37250 -13.11565 -13.00383 -12.92135 -12.72391 -12.58295 -12.39993 -12.33547 -12.11726 -11.90863 -11.64512 -11.61480 -11.50448 -10.96641 -10.49316 -9.91676 -9.65860 -9.51246 -8.37545 -6.00715 0.25972 0.56183 1.40295 1.43984 1.55257 1.66876 1.80802 2.18831 2.31167 2.80427 2.95414 3.17296 3.92241 4.02199 4.13670 4.24736 4.29661 4.32302 4.37736 4.37847 4.48627 4.54337 4.64768 4.67955 4.70965 4.75173 4.85176 5.03853 5.11990 5.17854 5.27523 5.36924 5.42231 5.56896 5.60001 5.64710 5.69721 5.82319 6.16230 6.32796 7.02705 7.15818 7.41217 7.81443 8.66584 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.013630 B = 0.007273 C = 0.005871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.786876 B = 3849.172469 C = 4768.360489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.098 4.098 3 C -0.060 4.060 4 C -0.126 4.126 5 C -0.099 4.099 6 C -0.139 4.139 7 C -0.085 4.085 8 C -0.119 4.119 9 C 0.504 3.496 10 O -0.625 6.625 11 N -0.430 5.430 12 C -0.330 4.330 13 H 0.104 0.896 14 C -0.003 4.003 15 N -0.905 5.905 16 Si 0.993 3.007 17 H -0.266 1.266 18 H -0.286 1.286 19 H -0.262 1.262 20 C 0.151 3.849 21 C 0.491 3.509 22 O -0.545 6.545 23 O -0.374 6.374 24 C 0.038 3.962 25 H 0.071 0.929 26 H 0.025 0.975 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.061 0.939 30 H 0.157 0.843 31 H 0.162 0.838 32 H 0.144 0.856 33 H 0.099 0.901 34 H 0.273 0.727 35 H 0.136 0.864 36 H 0.082 0.918 37 H 0.136 0.864 38 H 0.049 0.951 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.276 -0.762 -7.227 7.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.135 4.135 3 C -0.061 4.061 4 C -0.144 4.144 5 C -0.117 4.117 6 C -0.156 4.156 7 C -0.104 4.104 8 C -0.122 4.122 9 C 0.296 3.704 10 O -0.514 6.514 11 N -0.147 5.147 12 C -0.457 4.457 13 H 0.122 0.878 14 C -0.203 4.203 15 N -0.545 5.545 16 Si 0.817 3.183 17 H -0.191 1.191 18 H -0.212 1.212 19 H -0.186 1.186 20 C 0.025 3.975 21 C 0.335 3.665 22 O -0.434 6.434 23 O -0.291 6.291 24 C -0.056 4.056 25 H 0.090 0.910 26 H 0.045 0.955 27 H 0.089 0.911 28 H 0.114 0.886 29 H 0.080 0.920 30 H 0.175 0.825 31 H 0.180 0.820 32 H 0.162 0.838 33 H 0.117 0.883 34 H 0.083 0.917 35 H 0.154 0.846 36 H 0.100 0.900 37 H 0.154 0.846 38 H 0.068 0.932 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.163 -0.971 -6.956 7.026 hybrid contribution -0.087 1.047 0.904 1.386 sum 0.077 0.076 -6.052 6.053 Atomic orbital electron populations 1.21629 0.94088 1.02150 1.01323 1.20726 0.96868 0.92284 1.03633 1.20171 0.97410 0.96659 0.91871 1.21270 1.00295 0.95713 0.97106 1.21606 0.97246 0.94253 0.98583 1.21315 1.01537 1.01060 0.91735 1.21240 0.97197 0.93051 0.98955 1.19751 1.04001 0.95394 0.93049 1.18666 0.79688 0.85822 0.86266 1.90540 1.56491 1.24147 1.80226 1.43450 1.37895 1.21963 1.11371 1.19888 1.34279 0.96820 0.94747 0.87803 1.26089 0.98342 1.01392 0.94479 1.69762 1.44962 1.39581 1.00175 0.84904 0.78431 0.76864 0.78149 1.19091 1.21217 1.18631 1.20665 0.97647 0.96640 0.82516 1.24047 0.85055 0.75948 0.81486 1.90474 1.38744 1.36050 1.78150 1.86426 1.50509 1.69041 1.23108 1.23309 0.88017 1.00259 0.94010 0.91042 0.95541 0.91109 0.88555 0.92002 0.82513 0.82039 0.83842 0.88284 0.91686 0.84635 0.89968 0.84642 0.93173 0.93570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.15 9.89 71.98 0.71 -3.44 16 2 C -0.10 -3.31 5.61 29.85 0.17 -3.14 16 3 C -0.06 -2.21 5.17 -19.60 -0.10 -2.31 16 4 C -0.13 -3.54 9.67 22.23 0.22 -3.33 16 5 C -0.10 -2.59 10.04 22.34 0.22 -2.36 16 6 C -0.14 -4.43 10.03 22.23 0.22 -4.20 16 7 C -0.09 -3.61 8.02 22.54 0.18 -3.43 16 8 C -0.12 -5.36 4.72 -20.09 -0.09 -5.45 16 9 C 0.50 26.23 6.36 86.75 0.55 26.79 16 10 O -0.63 -34.95 14.68 -4.01 -0.06 -35.01 16 11 N -0.43 -22.56 2.18 -642.99 -1.40 -23.96 16 12 C -0.33 -16.88 7.96 84.10 0.67 -16.21 16 13 H 0.10 5.19 6.31 -2.91 -0.02 5.17 16 14 C 0.00 -0.13 5.23 84.96 0.44 0.32 16 15 N -0.90 -46.83 8.74 21.68 0.19 -46.64 16 16 Si 0.99 39.78 29.56 68.60 2.03 41.81 16 17 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 18 H -0.29 -11.58 7.11 99.48 0.71 -10.87 16 19 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 20 C 0.15 7.61 5.17 85.63 0.44 8.05 16 21 C 0.49 25.36 6.10 71.24 0.43 25.80 16 22 O -0.55 -31.51 15.91 21.96 0.35 -31.16 16 23 O -0.37 -16.52 10.57 -51.41 -0.54 -17.06 16 24 C 0.04 1.30 10.56 113.37 1.20 2.50 16 25 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 28 H 0.10 2.54 8.06 -2.39 -0.02 2.52 16 29 H 0.06 2.55 5.77 -2.38 -0.01 2.54 16 30 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 31 H 0.16 2.79 8.06 -2.91 -0.02 2.76 16 32 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 33 H 0.10 4.76 7.57 -2.91 -0.02 4.74 16 34 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 35 H 0.14 6.81 6.14 -2.38 -0.01 6.80 16 36 H 0.08 3.96 7.55 -2.39 -0.02 3.94 16 37 H 0.14 3.31 8.14 -2.39 -0.02 3.29 16 38 H 0.05 1.73 8.13 -2.39 -0.02 1.71 16 39 H 0.05 1.67 8.13 -2.39 -0.02 1.65 16 Total: -1.00 -69.74 330.19 6.89 -62.85 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: 1.06 Total: 29.59 kcal Atomic # 6 Polarization: 14.31 SS G_CDS: 5.27 Total: 19.58 kcal Atomic # 7 Polarization: -69.38 SS G_CDS: -1.21 Total: -70.59 kcal Atomic # 8 Polarization: -82.98 SS G_CDS: -0.25 Total: -83.23 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.81 kcal Total: -69.74 6.89 -62.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129401214.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.265 kcal (2) G-P(sol) polarization free energy of solvation -69.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds