Wall clock time and date at job start Tue Mar 31 2020 07:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46945 * 2 1 4 4 H 1.08997 * 109.46933 * 304.99670 * 3 2 1 5 5 N 1.46493 * 109.47201 * 64.99986 * 3 2 1 6 6 C 1.34771 * 120.00222 * 274.99785 * 5 3 2 7 7 O 1.21692 * 119.99727 * 0.02562 * 6 5 3 8 8 C 1.46372 * 120.00413 * 180.02562 * 6 5 3 9 9 H 1.08001 * 120.00205 * 353.93622 * 8 6 5 10 10 C 1.40048 * 120.00264 * 173.93539 * 8 6 5 11 11 N 1.30673 * 119.99868 * 6.15059 * 10 8 6 12 12 Si 1.86801 * 120.00336 * 186.14640 * 10 8 6 13 13 H 1.48499 * 109.46990 * 94.98482 * 12 10 8 14 14 H 1.48502 * 109.47220 * 214.98639 * 12 10 8 15 15 H 1.48500 * 109.47025 * 334.98607 * 12 10 8 16 16 C 1.50709 * 109.46895 * 184.99804 * 3 2 1 17 17 C 1.38247 * 119.94449 * 280.00148 * 16 3 2 18 18 C 1.38193 * 120.11655 * 180.09664 * 17 16 3 19 19 C 1.38699 * 120.06278 * 0.27803 * 18 17 16 20 20 C 1.38982 * 119.82029 * 359.34867 * 19 18 17 21 21 C 1.38196 * 119.94062 * 100.02215 * 16 3 2 22 22 O 1.36105 * 120.78069 * 180.55024 * 20 19 18 23 23 C 1.43173 * 116.71494 * 342.96839 * 22 20 19 24 24 C 1.53463 * 108.25899 * 46.17868 * 23 22 20 25 25 O 1.36106 * 119.39822 * 179.90724 * 19 18 17 26 26 H 1.08999 * 109.46553 * 59.99949 * 1 2 3 27 27 H 1.09003 * 109.47096 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46911 * 300.00201 * 1 2 3 29 29 H 1.09003 * 109.47629 * 239.99695 * 2 1 3 30 30 H 1.09003 * 109.47269 * 119.99497 * 2 1 3 31 31 H 0.97008 * 120.00265 * 95.00007 * 5 3 2 32 32 H 0.97000 * 119.99974 * 180.02562 * 11 10 8 33 33 H 1.08009 * 119.94150 * 0.11338 * 17 16 3 34 34 H 1.07998 * 119.96910 * 180.02562 * 18 17 16 35 35 H 1.08003 * 119.97021 * 359.94166 * 21 16 3 36 36 H 1.09011 * 109.70369 * 165.87087 * 23 22 20 37 37 H 1.09001 * 109.70859 * 286.48376 * 23 22 20 38 38 H 1.09006 * 109.70557 * 59.97497 * 24 23 22 39 39 H 1.08998 * 109.70985 * 180.59476 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6524 2.0975 1.2517 6 6 0.4352 2.6644 1.3669 7 8 -0.3422 2.6318 0.4312 8 6 0.0481 3.3193 2.6174 9 1 0.6966 3.2640 3.4792 10 6 -1.1633 4.0177 2.6964 11 7 -2.0028 3.9848 1.6956 12 14 -1.5789 4.9962 4.2324 13 1 -1.1821 6.4140 4.0385 14 1 -3.0401 4.9214 4.4866 15 1 -0.8449 4.4310 5.3930 16 6 3.5420 1.4443 -0.1238 17 6 4.3264 1.2029 0.9887 18 6 5.7040 1.2057 0.8797 19 6 6.3035 1.4565 -0.3457 20 6 5.5148 1.6915 -1.4657 21 6 4.1328 1.6877 -1.3492 22 8 6.0824 1.9287 -2.6799 23 6 7.4666 2.2943 -2.6829 24 6 8.2192 1.3358 -1.7502 25 8 7.6614 1.4579 -0.4373 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 2.2719 2.1232 1.9978 32 1 -2.8417 4.4688 1.7502 33 1 3.8616 1.0116 1.9448 34 1 6.3144 1.0164 1.7502 35 1 3.5177 1.8754 -2.2169 36 1 7.8661 2.2128 -3.6939 37 1 7.5772 3.3179 -2.3250 38 1 8.1037 0.3115 -2.1049 39 1 9.2764 1.6001 -1.7267 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132498510.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:58 Heat of formation + Delta-G solvation = -90.506934 kcal Electronic energy + Delta-G solvation = -23136.608518 eV Core-core repulsion = 19623.694788 eV Total energy + Delta-G solvation = -3512.913730 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.26854 -38.76909 -37.29046 -37.02307 -34.34520 -32.37501 -31.21821 -30.89837 -30.60651 -28.58842 -26.46354 -25.39202 -24.07510 -22.64625 -21.24357 -20.46382 -19.18210 -18.70556 -17.40767 -17.19078 -16.89646 -15.49276 -15.40976 -15.08998 -14.94473 -14.47729 -14.44700 -13.95345 -13.82036 -13.75544 -13.60863 -13.03608 -12.52942 -12.36550 -12.13467 -11.75147 -11.49489 -11.23166 -11.11631 -11.06277 -10.91362 -10.70943 -10.56659 -10.44979 -10.27921 -10.16494 -9.98642 -8.82108 -8.52916 -7.96872 -7.53951 -7.41498 -6.16551 -4.60350 1.37112 1.39291 2.93151 3.12893 3.15664 3.23288 3.26279 3.78096 4.06549 4.13447 4.58300 4.61111 4.62084 4.68245 4.86754 5.01415 5.06686 5.22855 5.34127 5.40860 5.49275 5.68149 5.86262 5.89224 5.99427 6.08021 6.20587 6.28797 6.40592 6.53156 6.64924 6.69161 6.80630 6.86677 7.00543 7.39857 7.40428 7.46569 7.95819 8.13804 8.36441 9.05848 9.56587 10.62560 10.81812 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.024074 B = 0.003696 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.780193 B = 7573.009029 C = 8007.125833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C 0.194 3.806 4 H 0.086 0.914 5 N -0.759 5.759 6 C 0.558 3.442 7 O -0.572 6.572 8 C -0.547 4.547 9 H 0.066 0.934 10 C 0.090 3.910 11 N -0.767 5.767 12 Si 0.905 3.095 13 H -0.273 1.273 14 H -0.280 1.280 15 H -0.265 1.265 16 C -0.066 4.066 17 C -0.106 4.106 18 C -0.110 4.110 19 C 0.038 3.962 20 C 0.049 3.951 21 C -0.105 4.105 22 O -0.308 6.308 23 C 0.021 3.979 24 C 0.022 3.978 25 O -0.310 6.310 26 H 0.056 0.944 27 H 0.029 0.971 28 H 0.076 0.924 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.379 0.621 32 H 0.267 0.733 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.119 0.881 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.163 -5.595 -5.084 19.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.160 4.160 3 C 0.088 3.912 4 H 0.104 0.896 5 N -0.415 5.415 6 C 0.362 3.638 7 O -0.455 6.455 8 C -0.584 4.584 9 H 0.084 0.916 10 C -0.130 4.130 11 N -0.395 5.395 12 Si 0.729 3.271 13 H -0.199 1.199 14 H -0.205 1.205 15 H -0.189 1.189 16 C -0.067 4.067 17 C -0.124 4.124 18 C -0.129 4.129 19 C -0.007 4.007 20 C 0.005 3.995 21 C -0.124 4.124 22 O -0.223 6.223 23 C -0.055 4.055 24 C -0.054 4.054 25 O -0.225 6.225 26 H 0.075 0.925 27 H 0.048 0.952 28 H 0.095 0.905 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.211 0.789 32 H 0.078 0.922 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.153 0.847 36 H 0.137 0.863 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 17.431 -5.549 -5.898 19.220 hybrid contribution 0.442 0.569 0.951 1.194 sum 17.873 -4.980 -4.946 19.202 Atomic orbital electron populations 1.21783 0.94202 0.99030 1.04710 1.21912 0.97569 0.96009 1.00528 1.19470 0.86802 0.93491 0.91470 0.89626 1.46287 1.18973 1.62743 1.13459 1.18123 0.78929 0.77577 0.89186 1.90609 1.51046 1.62175 1.41630 1.20883 1.05208 1.35179 0.97132 0.91564 1.25661 0.95394 0.95318 0.96633 1.70018 1.06925 1.32817 1.29779 0.86411 0.77992 0.80276 0.82380 1.19898 1.20535 1.18942 1.20038 0.96655 0.97827 0.92197 1.20797 0.91998 1.00542 0.99097 1.20381 0.94562 1.02568 0.95388 1.18839 0.82229 1.04897 0.94729 1.18813 0.92745 1.03567 0.84391 1.20308 0.90750 1.02852 0.98531 1.86306 1.25051 1.84823 1.26125 1.23590 0.80693 0.98779 1.02453 1.23573 0.98995 1.00288 0.82565 1.86278 1.17458 1.89681 1.29111 0.92525 0.95161 0.90469 0.92896 0.92661 0.78851 0.92212 0.84795 0.84951 0.84704 0.86327 0.90601 0.90703 0.86385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.51 37.16 0.32 -2.54 16 2 C -0.12 -2.14 5.59 -26.73 -0.15 -2.29 16 3 C 0.19 3.69 2.46 -69.08 -0.17 3.52 16 4 H 0.09 1.84 7.43 -51.93 -0.39 1.45 16 5 N -0.76 -16.42 4.97 -56.35 -0.28 -16.70 16 6 C 0.56 15.17 6.31 -12.99 -0.08 15.09 16 7 O -0.57 -17.34 12.18 5.20 0.06 -17.28 16 8 C -0.55 -15.13 9.53 -35.63 -0.34 -15.47 16 9 H 0.07 1.70 7.85 -52.49 -0.41 1.28 16 10 C 0.09 2.46 5.49 -17.37 -0.10 2.37 16 11 N -0.77 -22.56 11.85 55.55 0.66 -21.90 16 12 Si 0.90 20.05 29.56 -169.99 -5.03 15.02 16 13 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 14 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 15 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 16 C -0.07 -1.07 4.95 -104.63 -0.52 -1.59 16 17 C -0.11 -1.53 9.04 -39.59 -0.36 -1.89 16 18 C -0.11 -1.49 9.96 -39.43 -0.39 -1.89 16 19 C 0.04 0.53 6.49 -39.14 -0.25 0.28 16 20 C 0.05 0.73 6.49 -39.14 -0.25 0.47 16 21 C -0.11 -1.64 9.58 -39.43 -0.38 -2.02 16 22 O -0.31 -4.08 10.42 -32.87 -0.34 -4.42 16 23 C 0.02 0.18 7.26 37.40 0.27 0.45 16 24 C 0.02 0.18 7.26 37.40 0.27 0.45 16 25 O -0.31 -3.87 10.42 -32.87 -0.34 -4.21 16 26 H 0.06 1.23 7.84 -51.93 -0.41 0.82 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 1.88 5.64 -51.93 -0.29 1.59 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.38 7.33 6.85 -40.82 -0.28 7.05 16 32 H 0.27 7.18 8.29 -40.82 -0.34 6.84 16 33 H 0.13 1.78 6.91 -52.48 -0.36 1.42 16 34 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 35 H 0.14 2.01 8.03 -52.48 -0.42 1.59 16 36 H 0.12 0.65 8.14 -51.92 -0.42 0.23 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 323.58 15.07 4.88 4.88 Total: -1.00 -33.67 323.58 -7.60 -41.27 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -5.08 Total: 8.41 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -2.13 Total: -5.06 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.38 Total: -38.61 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.62 Total: -25.91 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.03 Total: 15.02 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.67 -7.60 -41.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132498510.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.234 kcal (2) G-P(sol) polarization free energy of solvation -33.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds