Wall clock time and date at job start Tue Mar 31 2020 07:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46945 * 2 1 4 4 H 1.08997 * 109.46933 * 304.99670 * 3 2 1 5 5 N 1.46493 * 109.47201 * 64.99986 * 3 2 1 6 6 C 1.34771 * 120.00222 * 274.99785 * 5 3 2 7 7 O 1.21692 * 119.99727 * 0.02562 * 6 5 3 8 8 C 1.46372 * 120.00413 * 180.02562 * 6 5 3 9 9 H 1.08001 * 120.00205 * 353.93622 * 8 6 5 10 10 C 1.40048 * 120.00264 * 173.93539 * 8 6 5 11 11 N 1.30673 * 119.99868 * 6.15059 * 10 8 6 12 12 Si 1.86801 * 120.00336 * 186.14640 * 10 8 6 13 13 H 1.48499 * 109.46990 * 94.98482 * 12 10 8 14 14 H 1.48502 * 109.47220 * 214.98639 * 12 10 8 15 15 H 1.48500 * 109.47025 * 334.98607 * 12 10 8 16 16 C 1.50709 * 109.46895 * 184.99804 * 3 2 1 17 17 C 1.38247 * 119.94449 * 280.00148 * 16 3 2 18 18 C 1.38193 * 120.11655 * 180.09664 * 17 16 3 19 19 C 1.38699 * 120.06278 * 0.27803 * 18 17 16 20 20 C 1.38982 * 119.82029 * 359.34867 * 19 18 17 21 21 C 1.38196 * 119.94062 * 100.02215 * 16 3 2 22 22 O 1.36105 * 120.78069 * 180.55024 * 20 19 18 23 23 C 1.43173 * 116.71494 * 342.96839 * 22 20 19 24 24 C 1.53463 * 108.25899 * 46.17868 * 23 22 20 25 25 O 1.36106 * 119.39822 * 179.90724 * 19 18 17 26 26 H 1.08999 * 109.46553 * 59.99949 * 1 2 3 27 27 H 1.09003 * 109.47096 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46911 * 300.00201 * 1 2 3 29 29 H 1.09003 * 109.47629 * 239.99695 * 2 1 3 30 30 H 1.09003 * 109.47269 * 119.99497 * 2 1 3 31 31 H 0.97008 * 120.00265 * 95.00007 * 5 3 2 32 32 H 0.97000 * 119.99974 * 180.02562 * 11 10 8 33 33 H 1.08009 * 119.94150 * 0.11338 * 17 16 3 34 34 H 1.07998 * 119.96910 * 180.02562 * 18 17 16 35 35 H 1.08003 * 119.97021 * 359.94166 * 21 16 3 36 36 H 1.09011 * 109.70369 * 165.87087 * 23 22 20 37 37 H 1.09001 * 109.70859 * 286.48376 * 23 22 20 38 38 H 1.09006 * 109.70557 * 59.97497 * 24 23 22 39 39 H 1.08998 * 109.70985 * 180.59476 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6524 2.0975 1.2517 6 6 0.4352 2.6644 1.3669 7 8 -0.3422 2.6318 0.4312 8 6 0.0481 3.3193 2.6174 9 1 0.6966 3.2640 3.4792 10 6 -1.1633 4.0177 2.6964 11 7 -2.0028 3.9848 1.6956 12 14 -1.5789 4.9962 4.2324 13 1 -1.1821 6.4140 4.0385 14 1 -3.0401 4.9214 4.4866 15 1 -0.8449 4.4310 5.3930 16 6 3.5420 1.4443 -0.1238 17 6 4.3264 1.2029 0.9887 18 6 5.7040 1.2057 0.8797 19 6 6.3035 1.4565 -0.3457 20 6 5.5148 1.6915 -1.4657 21 6 4.1328 1.6877 -1.3492 22 8 6.0824 1.9287 -2.6799 23 6 7.4666 2.2943 -2.6829 24 6 8.2192 1.3358 -1.7502 25 8 7.6614 1.4579 -0.4373 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 2.2719 2.1232 1.9978 32 1 -2.8417 4.4688 1.7502 33 1 3.8616 1.0116 1.9448 34 1 6.3144 1.0164 1.7502 35 1 3.5177 1.8754 -2.2169 36 1 7.8661 2.2128 -3.6939 37 1 7.5772 3.3179 -2.3250 38 1 8.1037 0.3115 -2.1049 39 1 9.2764 1.6001 -1.7267 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132498510.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:58 Heat of formation + Delta-G solvation = -113.652004 kcal Electronic energy + Delta-G solvation = -23137.612164 eV Core-core repulsion = 19623.694788 eV Total energy + Delta-G solvation = -3513.917376 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.24190 -40.25505 -38.60992 -38.22949 -36.01279 -34.46041 -32.82620 -32.02900 -31.76575 -29.72191 -28.33987 -26.77093 -25.21862 -23.77844 -22.73041 -21.90537 -20.74142 -19.80056 -19.04401 -18.23117 -18.06255 -17.40593 -16.51623 -16.35199 -16.18849 -15.86923 -15.69515 -15.36766 -15.15533 -14.86489 -14.83637 -14.47046 -14.00551 -13.73888 -13.65025 -13.37290 -13.07355 -12.75339 -12.65798 -12.52541 -12.39662 -12.06950 -11.98504 -11.95389 -11.84148 -11.63162 -11.39963 -10.87237 -9.72434 -9.62802 -9.32381 -9.01818 -8.22897 -6.76855 0.22640 0.28591 1.42107 1.42840 1.57909 2.02908 2.26412 2.29275 2.55482 2.65220 3.21874 3.30476 3.65991 3.68284 3.74844 3.96194 4.07576 4.13125 4.23755 4.35422 4.36508 4.42453 4.51657 4.59811 4.65502 4.78309 4.89559 5.02149 5.07800 5.12592 5.14529 5.30973 5.38146 5.52579 5.63847 5.65188 5.90610 5.97466 6.30652 6.37591 6.41491 6.94406 7.64227 8.58512 8.76386 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.024074 B = 0.003696 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.780193 B = 7573.009029 C = 8007.125833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.113 4.113 3 C 0.198 3.802 4 H 0.051 0.949 5 N -0.747 5.747 6 C 0.547 3.453 7 O -0.613 6.613 8 C -0.576 4.576 9 H 0.083 0.917 10 C 0.033 3.967 11 N -0.819 5.819 12 Si 0.991 3.009 13 H -0.267 1.267 14 H -0.274 1.274 15 H -0.249 1.249 16 C -0.079 4.079 17 C -0.106 4.106 18 C -0.108 4.108 19 C 0.039 3.961 20 C 0.045 3.955 21 C -0.119 4.119 22 O -0.326 6.326 23 C 0.012 3.988 24 C 0.016 3.984 25 O -0.319 6.319 26 H 0.030 0.970 27 H 0.056 0.944 28 H 0.034 0.966 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.392 0.608 32 H 0.272 0.728 33 H 0.145 0.855 34 H 0.158 0.842 35 H 0.129 0.871 36 H 0.154 0.846 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.005 -5.926 -3.906 22.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.152 4.152 3 C 0.093 3.907 4 H 0.069 0.931 5 N -0.402 5.402 6 C 0.350 3.650 7 O -0.499 6.499 8 C -0.613 4.613 9 H 0.101 0.899 10 C -0.182 4.182 11 N -0.449 5.449 12 Si 0.811 3.189 13 H -0.192 1.192 14 H -0.199 1.199 15 H -0.173 1.173 16 C -0.080 4.080 17 C -0.124 4.124 18 C -0.126 4.126 19 C -0.006 4.006 20 C 0.000 4.000 21 C -0.138 4.138 22 O -0.241 6.241 23 C -0.063 4.063 24 C -0.059 4.059 25 O -0.234 6.234 26 H 0.049 0.951 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.226 0.774 32 H 0.082 0.918 33 H 0.163 0.837 34 H 0.175 0.825 35 H 0.147 0.853 36 H 0.172 0.828 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 20.343 -5.903 -4.721 21.702 hybrid contribution -0.267 0.636 0.450 0.823 sum 20.076 -5.268 -4.270 21.191 Atomic orbital electron populations 1.21636 0.96379 0.99572 1.01287 1.21847 0.95339 0.95467 1.02506 1.19405 0.89018 0.93512 0.88800 0.93126 1.45953 1.17586 1.61764 1.14865 1.18373 0.80046 0.77665 0.88900 1.90573 1.52770 1.63730 1.42844 1.21415 1.06172 1.35789 0.97938 0.89912 1.26834 0.94850 0.96083 1.00442 1.70182 1.07722 1.34232 1.32756 0.85106 0.77918 0.78277 0.77597 1.19155 1.19945 1.17257 1.19696 0.94623 1.00294 0.93372 1.20882 0.92507 1.00257 0.98758 1.20631 0.94250 1.01572 0.96154 1.18995 0.83198 1.03848 0.94557 1.18823 0.92468 1.03414 0.85337 1.20305 0.91633 1.03611 0.98277 1.86279 1.27549 1.84763 1.25496 1.23992 0.78574 0.98879 1.04834 1.23955 1.00596 1.00651 0.80657 1.86266 1.16227 1.89353 1.31603 0.95050 0.92505 0.94724 0.90406 0.90922 0.77359 0.91831 0.83728 0.82488 0.85301 0.82808 0.90531 0.90052 0.82611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.56 8.51 71.98 0.61 -4.94 16 2 C -0.11 -4.00 5.59 30.60 0.17 -3.82 16 3 C 0.20 7.77 2.46 44.25 0.11 7.88 16 4 H 0.05 2.33 7.43 -2.39 -0.02 2.31 16 5 N -0.75 -33.11 4.97 -450.40 -2.24 -35.35 16 6 C 0.55 30.91 6.31 86.36 0.54 31.46 16 7 O -0.61 -39.35 12.18 -4.32 -0.05 -39.41 16 8 C -0.58 -32.47 9.53 24.83 0.24 -32.23 16 9 H 0.08 4.22 7.85 -2.91 -0.02 4.19 16 10 C 0.03 1.84 5.49 85.30 0.47 2.31 16 11 N -0.82 -49.96 11.85 21.84 0.26 -49.70 16 12 Si 0.99 41.31 29.56 68.60 2.03 43.33 16 13 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 14 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 15 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 16 C -0.08 -2.55 4.95 -19.87 -0.10 -2.65 16 17 C -0.11 -2.90 9.04 22.26 0.20 -2.70 16 18 C -0.11 -2.66 9.96 22.37 0.22 -2.44 16 19 C 0.04 1.02 6.49 22.56 0.15 1.17 16 20 C 0.04 1.27 6.49 22.56 0.15 1.42 16 21 C -0.12 -3.74 9.58 22.37 0.21 -3.53 16 22 O -0.33 -8.19 10.42 -82.52 -0.86 -9.05 16 23 C 0.01 0.18 7.26 72.14 0.52 0.70 16 24 C 0.02 0.21 7.26 72.14 0.52 0.74 16 25 O -0.32 -7.03 10.42 -82.53 -0.86 -7.89 16 26 H 0.03 1.43 7.84 -2.39 -0.02 1.41 16 27 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.03 1.75 5.64 -2.39 -0.01 1.73 16 29 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.39 15.15 6.85 -92.70 -0.63 14.51 16 32 H 0.27 15.12 8.29 -92.71 -0.77 14.35 16 33 H 0.15 3.58 6.91 -2.91 -0.02 3.56 16 34 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 35 H 0.13 4.05 8.03 -2.91 -0.02 4.03 16 36 H 0.15 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 38 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 39 H 0.16 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -76.85 323.58 2.74 -74.11 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: 0.44 Total: 30.60 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: 4.02 Total: -6.65 kcal Atomic # 7 Polarization: -83.07 SS G_CDS: -1.98 Total: -85.05 kcal Atomic # 8 Polarization: -54.58 SS G_CDS: -1.77 Total: -56.35 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.33 kcal Total: -76.85 2.74 -74.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132498510.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.539 kcal (2) G-P(sol) polarization free energy of solvation -76.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds