Wall clock time and date at job start Tue Mar 31 2020 06:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46856 * 2 1 4 4 C 1.52995 * 109.47412 * 240.00159 * 2 1 3 5 5 N 1.46498 * 109.47684 * 59.99468 * 4 2 1 6 6 C 1.34771 * 120.00078 * 180.02562 * 5 4 2 7 7 O 1.21686 * 120.00169 * 359.97438 * 6 5 4 8 8 C 1.46376 * 119.99988 * 180.02562 * 6 5 4 9 9 H 1.08000 * 119.99631 * 359.97438 * 8 6 5 10 10 C 1.40048 * 120.00110 * 179.97438 * 8 6 5 11 11 N 1.30669 * 120.00375 * 0.02562 * 10 8 6 12 12 Si 1.86806 * 119.99944 * 179.97438 * 10 8 6 13 13 H 1.48508 * 109.47008 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46747 * 119.99957 * 12 10 8 15 15 H 1.48500 * 109.47257 * 240.00072 * 12 10 8 16 16 C 1.50699 * 109.47174 * 119.99438 * 2 1 3 17 17 C 1.38247 * 119.92634 * 120.02202 * 16 2 1 18 18 C 1.38240 * 120.14459 * 179.75199 * 17 16 2 19 19 C 1.38552 * 120.02633 * 0.42901 * 18 17 16 20 20 C 1.39265 * 119.82706 * 359.57585 * 19 18 17 21 21 C 1.38231 * 119.92969 * 300.00614 * 16 2 1 22 22 O 1.36496 * 108.64230 * 180.24572 * 20 19 18 23 23 C 1.43981 * 105.48444 * 342.72036 * 22 20 19 24 24 O 1.36505 * 131.53353 * 179.87931 * 19 18 17 25 25 H 1.09002 * 109.47217 * 300.00284 * 1 2 3 26 26 H 1.08999 * 109.46994 * 60.00656 * 1 2 3 27 27 H 1.08998 * 109.46816 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47071 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47241 * 299.99199 * 3 2 1 30 30 H 1.08997 * 109.47669 * 59.99435 * 3 2 1 31 31 H 1.09001 * 109.47195 * 180.02562 * 4 2 1 32 32 H 1.09007 * 109.46685 * 299.99903 * 4 2 1 33 33 H 0.97000 * 119.99533 * 0.02562 * 5 4 2 34 34 H 0.96992 * 120.00592 * 180.02562 * 11 10 8 35 35 H 1.07994 * 119.93290 * 0.02562 * 17 16 2 36 36 H 1.07997 * 119.99327 * 180.33354 * 18 17 16 37 37 H 1.08003 * 119.98943 * 0.02562 * 21 16 2 38 38 H 1.09007 * 110.56955 * 268.54960 * 23 22 20 39 39 H 1.09003 * 110.57719 * 145.67764 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.5517 -0.0307 -2.4454 6 6 1.8770 -0.4915 -3.6694 7 8 2.5767 -1.4808 -3.7810 8 6 1.3895 0.1987 -4.8647 9 1 0.7688 1.0770 -4.7656 10 6 1.7279 -0.2798 -6.1366 11 7 2.4784 -1.3427 -6.2565 12 14 1.1052 0.6007 -7.6619 13 1 0.2805 1.7677 -7.2578 14 1 2.2602 1.0674 -8.4702 15 1 0.2803 -0.3328 -8.4703 16 6 2.0323 -0.7103 1.2305 17 6 2.8274 -1.8339 1.1020 18 6 3.2949 -2.4860 2.2277 19 6 2.9599 -2.0194 3.4886 20 6 2.1589 -0.8875 3.6180 21 6 1.6974 -0.2367 2.4852 22 8 1.9784 -0.6303 4.9463 23 6 2.3364 -1.8481 5.6258 24 8 3.2812 -2.4714 4.7359 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6765 1.9565 0.8899 31 1 3.1301 -0.7216 -1.2489 32 1 1.6767 -1.7489 -1.2492 33 1 0.9943 0.7581 -2.3565 34 1 2.7132 -1.6739 -7.1374 35 1 3.0875 -2.2005 0.1201 36 1 3.9203 -3.3604 2.1245 37 1 1.0760 0.6412 2.5827 38 1 1.4606 -2.4831 5.7605 39 1 2.8025 -1.6282 6.5863 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134169433.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:08 Heat of formation + Delta-G solvation = -81.025811 kcal Electronic energy + Delta-G solvation = -22891.285929 eV Core-core repulsion = 19378.783331 eV Total energy + Delta-G solvation = -3512.502598 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.26790 -39.40332 -37.21545 -36.40364 -35.45673 -32.62521 -31.78210 -30.55051 -29.23737 -27.09500 -27.05308 -26.08184 -24.95830 -23.07584 -22.62325 -20.05036 -19.29518 -17.96968 -17.75673 -17.41549 -16.78840 -16.22698 -15.35739 -14.96034 -14.57541 -14.40737 -14.36688 -13.96725 -13.79176 -13.45667 -13.29320 -13.13737 -13.08643 -12.70247 -12.51501 -12.12875 -11.97135 -11.51756 -11.36302 -11.18017 -11.11618 -10.87201 -10.72312 -10.55112 -10.47421 -10.25792 -10.15851 -8.88029 -8.84371 -8.08050 -7.60172 -7.47021 -6.17504 -4.62498 1.09122 1.17729 2.62516 3.13554 3.21845 3.25972 3.28987 3.53639 4.11204 4.40317 4.45664 4.55022 4.60762 4.72615 4.79532 5.06608 5.11890 5.18098 5.23292 5.25413 5.38279 5.46143 5.77963 5.82450 5.87939 5.97254 5.99143 6.01939 6.07106 6.22588 6.34373 6.36179 6.41850 6.45424 6.56577 6.62117 7.04152 7.44616 7.94445 8.11595 8.34487 9.04120 9.55299 10.61572 10.80521 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.040796 B = 0.003114 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.171358 B = 8989.466328 C = 9471.894958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.034 4.034 3 C -0.137 4.137 4 C 0.142 3.858 5 N -0.764 5.764 6 C 0.555 3.445 7 O -0.582 6.582 8 C -0.545 4.545 9 H 0.067 0.933 10 C 0.087 3.913 11 N -0.768 5.768 12 Si 0.906 3.094 13 H -0.264 1.264 14 H -0.277 1.277 15 H -0.277 1.277 16 C -0.049 4.049 17 C -0.106 4.106 18 C -0.095 4.095 19 C 0.019 3.981 20 C 0.028 3.972 21 C -0.094 4.094 22 O -0.312 6.312 23 C 0.214 3.786 24 O -0.312 6.312 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.379 0.621 34 H 0.267 0.733 35 H 0.149 0.851 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.081 0.919 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.628 1.921 19.665 19.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.034 4.034 3 C -0.194 4.194 4 C 0.017 3.983 5 N -0.421 5.421 6 C 0.359 3.641 7 O -0.465 6.465 8 C -0.582 4.582 9 H 0.085 0.915 10 C -0.132 4.132 11 N -0.397 5.397 12 Si 0.731 3.269 13 H -0.188 1.188 14 H -0.202 1.202 15 H -0.202 1.202 16 C -0.050 4.050 17 C -0.124 4.124 18 C -0.113 4.113 19 C -0.025 4.025 20 C -0.016 4.016 21 C -0.113 4.113 22 O -0.228 6.228 23 C 0.102 3.898 24 O -0.228 6.228 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.212 0.788 34 H 0.078 0.922 35 H 0.167 0.833 36 H 0.153 0.847 37 H 0.151 0.849 38 H 0.099 0.901 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.914 1.089 19.669 19.792 hybrid contribution -0.567 0.683 -0.328 0.946 sum -2.480 1.773 19.341 19.580 Atomic orbital electron populations 1.21875 0.93181 1.02435 1.01902 1.19730 0.96254 0.95650 0.91801 1.21876 1.01570 0.94065 1.01897 1.20991 0.98084 0.95407 0.83798 1.46165 1.57875 1.32946 1.05132 1.18202 0.80246 0.84197 0.81487 1.90596 1.41558 1.28329 1.85969 1.20912 1.34041 1.13675 0.89609 0.91472 1.25700 0.93381 0.94106 1.00015 1.70025 1.27113 1.18633 1.23927 0.86346 0.79087 0.79982 0.81495 1.18807 1.20210 1.20208 1.19541 0.96877 0.95347 0.93197 1.21186 0.97342 0.95060 0.98799 1.20121 1.02333 1.01267 0.87606 1.19805 1.00107 0.95841 0.86739 1.19705 1.00857 0.96514 0.84550 1.19826 1.01879 1.01481 0.88097 1.87336 1.85115 1.35309 1.15067 1.25562 0.90991 0.80277 0.93003 1.87343 1.53246 1.67669 1.14592 0.92793 0.91433 0.92301 0.92275 0.91437 0.92777 0.92974 0.92984 0.78792 0.92210 0.83321 0.84699 0.84855 0.90140 0.85459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.11 37.16 0.30 -1.41 16 2 C -0.03 -0.46 0.61 -155.66 -0.09 -0.56 16 3 C -0.14 -1.73 8.11 37.16 0.30 -1.43 16 4 C 0.14 2.59 3.22 -4.05 -0.01 2.57 16 5 N -0.76 -16.32 4.95 -61.72 -0.31 -16.62 16 6 C 0.55 15.45 7.75 -12.99 -0.10 15.35 16 7 O -0.58 -18.56 15.02 5.20 0.08 -18.48 16 8 C -0.55 -15.17 9.54 -35.63 -0.34 -15.51 16 9 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 10 C 0.09 2.42 5.50 -17.37 -0.10 2.33 16 11 N -0.77 -22.91 11.83 55.55 0.66 -22.25 16 12 Si 0.91 19.97 29.56 -169.99 -5.02 14.94 16 13 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 14 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 15 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 16 C -0.05 -0.64 4.76 -104.62 -0.50 -1.14 16 17 C -0.11 -1.41 8.97 -39.58 -0.35 -1.77 16 18 C -0.09 -1.19 10.06 -39.46 -0.40 -1.59 16 19 C 0.02 0.25 7.15 -39.08 -0.28 -0.03 16 20 C 0.03 0.36 7.15 -39.08 -0.28 0.08 16 21 C -0.09 -1.17 8.72 -39.47 -0.34 -1.51 16 22 O -0.31 -3.73 11.40 -45.68 -0.52 -4.25 16 23 C 0.21 1.89 8.89 101.05 0.90 2.79 16 24 O -0.31 -3.78 11.40 -45.70 -0.52 -4.31 16 25 H 0.05 0.57 7.38 -51.93 -0.38 0.18 16 26 H 0.07 0.87 6.86 -51.93 -0.36 0.51 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 29 H 0.07 0.87 6.86 -51.93 -0.36 0.52 16 30 H 0.05 0.58 7.38 -51.93 -0.38 0.19 16 31 H 0.05 1.01 7.51 -51.93 -0.39 0.62 16 32 H 0.05 1.01 7.51 -51.93 -0.39 0.62 16 33 H 0.38 7.09 6.14 -40.82 -0.25 6.84 16 34 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 35 H 0.15 2.06 5.88 -52.49 -0.31 1.75 16 36 H 0.14 1.46 8.06 -52.49 -0.42 1.03 16 37 H 0.13 1.44 7.09 -52.48 -0.37 1.06 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.13 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 323.41 15.07 4.87 4.87 Total: -1.00 -34.76 323.41 -6.91 -41.67 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -4.85 Total: 6.25 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -1.30 Total: -1.82 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.35 Total: -38.87 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.96 Total: -27.04 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.76 -6.91 -41.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134169433.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.360 kcal (2) G-P(sol) polarization free energy of solvation -34.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds