Wall clock time and date at job start Tue Mar 31 2020 06:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46856 * 2 1 4 4 C 1.52995 * 109.47412 * 240.00159 * 2 1 3 5 5 N 1.46498 * 109.47684 * 59.99468 * 4 2 1 6 6 C 1.34771 * 120.00078 * 180.02562 * 5 4 2 7 7 O 1.21686 * 120.00169 * 359.97438 * 6 5 4 8 8 C 1.46376 * 119.99988 * 180.02562 * 6 5 4 9 9 H 1.08000 * 119.99631 * 359.97438 * 8 6 5 10 10 C 1.40048 * 120.00110 * 179.97438 * 8 6 5 11 11 N 1.30669 * 120.00375 * 0.02562 * 10 8 6 12 12 Si 1.86806 * 119.99944 * 179.97438 * 10 8 6 13 13 H 1.48508 * 109.47008 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46747 * 119.99957 * 12 10 8 15 15 H 1.48500 * 109.47257 * 240.00072 * 12 10 8 16 16 C 1.50699 * 109.47174 * 119.99438 * 2 1 3 17 17 C 1.38247 * 119.92634 * 120.02202 * 16 2 1 18 18 C 1.38240 * 120.14459 * 179.75199 * 17 16 2 19 19 C 1.38552 * 120.02633 * 0.42901 * 18 17 16 20 20 C 1.39265 * 119.82706 * 359.57585 * 19 18 17 21 21 C 1.38231 * 119.92969 * 300.00614 * 16 2 1 22 22 O 1.36496 * 108.64230 * 180.24572 * 20 19 18 23 23 C 1.43981 * 105.48444 * 342.72036 * 22 20 19 24 24 O 1.36505 * 131.53353 * 179.87931 * 19 18 17 25 25 H 1.09002 * 109.47217 * 300.00284 * 1 2 3 26 26 H 1.08999 * 109.46994 * 60.00656 * 1 2 3 27 27 H 1.08998 * 109.46816 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47071 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47241 * 299.99199 * 3 2 1 30 30 H 1.08997 * 109.47669 * 59.99435 * 3 2 1 31 31 H 1.09001 * 109.47195 * 180.02562 * 4 2 1 32 32 H 1.09007 * 109.46685 * 299.99903 * 4 2 1 33 33 H 0.97000 * 119.99533 * 0.02562 * 5 4 2 34 34 H 0.96992 * 120.00592 * 180.02562 * 11 10 8 35 35 H 1.07994 * 119.93290 * 0.02562 * 17 16 2 36 36 H 1.07997 * 119.99327 * 180.33354 * 18 17 16 37 37 H 1.08003 * 119.98943 * 0.02562 * 21 16 2 38 38 H 1.09007 * 110.56955 * 268.54960 * 23 22 20 39 39 H 1.09003 * 110.57719 * 145.67764 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.5517 -0.0307 -2.4454 6 6 1.8770 -0.4915 -3.6694 7 8 2.5767 -1.4808 -3.7810 8 6 1.3895 0.1987 -4.8647 9 1 0.7688 1.0770 -4.7656 10 6 1.7279 -0.2798 -6.1366 11 7 2.4784 -1.3427 -6.2565 12 14 1.1052 0.6007 -7.6619 13 1 0.2805 1.7677 -7.2578 14 1 2.2602 1.0674 -8.4702 15 1 0.2803 -0.3328 -8.4703 16 6 2.0323 -0.7103 1.2305 17 6 2.8274 -1.8339 1.1020 18 6 3.2949 -2.4860 2.2277 19 6 2.9599 -2.0194 3.4886 20 6 2.1589 -0.8875 3.6180 21 6 1.6974 -0.2367 2.4852 22 8 1.9784 -0.6303 4.9463 23 6 2.3364 -1.8481 5.6258 24 8 3.2812 -2.4714 4.7359 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6765 1.9565 0.8899 31 1 3.1301 -0.7216 -1.2489 32 1 1.6767 -1.7489 -1.2492 33 1 0.9943 0.7581 -2.3565 34 1 2.7132 -1.6739 -7.1374 35 1 3.0875 -2.2005 0.1201 36 1 3.9203 -3.3604 2.1245 37 1 1.0760 0.6412 2.5827 38 1 1.4606 -2.4831 5.7605 39 1 2.8025 -1.6282 6.5863 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134169433.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:07 Heat of formation + Delta-G solvation = -105.056702 kcal Electronic energy + Delta-G solvation = -22892.327987 eV Core-core repulsion = 19378.783331 eV Total energy + Delta-G solvation = -3513.544656 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.15784 -40.60587 -39.02361 -37.29725 -36.84166 -34.65867 -33.58621 -31.60090 -30.24987 -28.89067 -28.12019 -27.17464 -26.32052 -24.13900 -23.69012 -21.80771 -20.62257 -19.44949 -18.88168 -18.28447 -18.07218 -17.49504 -17.07484 -16.29731 -15.96991 -15.81288 -15.48531 -15.07996 -15.04210 -14.82765 -14.47319 -14.39387 -14.27342 -13.98877 -13.72778 -13.52155 -13.15617 -13.03237 -12.81755 -12.61028 -12.58251 -12.48913 -12.11118 -11.99578 -11.80138 -11.58196 -11.44909 -10.92001 -9.85617 -9.83040 -9.40778 -9.04274 -8.25953 -6.81301 0.08389 0.19316 1.42392 1.42652 1.60330 1.76026 2.26959 2.49715 2.51200 2.53244 3.15296 3.45249 3.61534 3.66458 3.79204 3.84682 4.04871 4.05220 4.15768 4.22247 4.29295 4.30072 4.53465 4.77140 4.79197 4.89262 4.90708 5.02241 5.03217 5.04738 5.08692 5.22178 5.32038 5.35740 5.41706 5.43095 5.55484 5.92147 6.11110 6.29080 6.32214 6.90783 7.60656 8.53973 8.71734 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.040796 B = 0.003114 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.171358 B = 8989.466328 C = 9471.894958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.020 4.020 3 C -0.136 4.136 4 C 0.146 3.854 5 N -0.748 5.748 6 C 0.538 3.462 7 O -0.634 6.634 8 C -0.572 4.572 9 H 0.088 0.912 10 C 0.028 3.972 11 N -0.823 5.823 12 Si 0.997 3.003 13 H -0.246 1.246 14 H -0.270 1.270 15 H -0.270 1.270 16 C -0.053 4.053 17 C -0.120 4.120 18 C -0.099 4.099 19 C 0.010 3.990 20 C 0.023 3.977 21 C -0.090 4.090 22 O -0.321 6.321 23 C 0.204 3.796 24 O -0.325 6.325 25 H 0.083 0.917 26 H 0.063 0.937 27 H 0.049 0.951 28 H 0.048 0.952 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.033 0.967 32 H 0.034 0.966 33 H 0.395 0.605 34 H 0.273 0.727 35 H 0.133 0.867 36 H 0.146 0.854 37 H 0.156 0.844 38 H 0.103 0.897 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.188 3.877 20.850 21.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.021 4.021 3 C -0.193 4.193 4 C 0.022 3.978 5 N -0.404 5.404 6 C 0.342 3.658 7 O -0.521 6.521 8 C -0.608 4.608 9 H 0.106 0.894 10 C -0.187 4.187 11 N -0.453 5.453 12 Si 0.816 3.184 13 H -0.168 1.168 14 H -0.195 1.195 15 H -0.195 1.195 16 C -0.054 4.054 17 C -0.138 4.138 18 C -0.118 4.118 19 C -0.034 4.034 20 C -0.021 4.021 21 C -0.108 4.108 22 O -0.237 6.237 23 C 0.094 3.906 24 O -0.242 6.242 25 H 0.102 0.898 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.230 0.770 34 H 0.083 0.917 35 H 0.151 0.849 36 H 0.164 0.836 37 H 0.173 0.827 38 H 0.120 0.880 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.503 3.082 20.918 21.432 hybrid contribution -0.054 0.019 -0.541 0.544 sum -3.557 3.101 20.377 20.917 Atomic orbital electron populations 1.21882 0.91816 1.02329 1.03201 1.19573 0.97170 0.95797 0.89536 1.21885 1.00986 0.93209 1.03193 1.21034 0.96999 0.95041 0.84775 1.45786 1.57028 1.33046 1.04506 1.18593 0.79890 0.83777 0.83551 1.90552 1.43842 1.30530 1.87201 1.21456 1.34565 1.14487 0.90315 0.89383 1.26964 0.92977 0.94660 1.04108 1.70195 1.28845 1.20866 1.25359 0.84988 0.78625 0.78865 0.75895 1.16849 1.19544 1.19513 1.19444 0.97205 0.95316 0.93406 1.21120 0.98315 0.95850 0.98501 1.20209 1.02422 1.01624 0.87526 1.19941 1.00146 0.96130 0.87160 1.19853 1.00628 0.96350 0.85269 1.19917 1.01718 1.01886 0.87296 1.87316 1.85170 1.36773 1.14467 1.26122 0.91762 0.79573 0.93179 1.87321 1.54312 1.68138 1.14453 0.89777 0.91788 0.93176 0.93303 0.91752 0.89809 0.94833 0.94735 0.76969 0.91696 0.84889 0.83592 0.82665 0.87968 0.82042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.11 71.98 0.58 -2.56 16 2 C -0.02 -0.54 0.61 -52.93 -0.03 -0.58 16 3 C -0.14 -3.21 8.11 71.98 0.58 -2.62 16 4 C 0.15 5.52 3.22 86.38 0.28 5.80 16 5 N -0.75 -32.57 4.95 -467.42 -2.32 -34.88 16 6 C 0.54 30.92 7.75 86.36 0.67 31.59 16 7 O -0.63 -42.46 15.02 -4.31 -0.06 -42.53 16 8 C -0.57 -32.04 9.54 24.83 0.24 -31.80 16 9 H 0.09 4.40 7.85 -2.91 -0.02 4.37 16 10 C 0.03 1.54 5.50 85.30 0.47 2.01 16 11 N -0.82 -50.48 11.83 21.84 0.26 -50.22 16 12 Si 1.00 40.72 29.56 68.60 2.03 42.74 16 13 H -0.25 -9.20 7.11 99.48 0.71 -8.49 16 14 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 15 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 16 C -0.05 -1.36 4.76 -19.86 -0.09 -1.45 16 17 C -0.12 -3.30 8.97 22.27 0.20 -3.10 16 18 C -0.10 -2.53 10.06 22.35 0.22 -2.30 16 19 C 0.01 0.26 7.15 22.59 0.16 0.42 16 20 C 0.02 0.56 7.15 22.59 0.16 0.73 16 21 C -0.09 -2.03 8.72 22.34 0.19 -1.84 16 22 O -0.32 -6.89 11.40 -76.01 -0.87 -7.76 16 23 C 0.20 3.09 8.89 113.37 1.01 4.10 16 24 O -0.33 -7.40 11.40 -76.10 -0.87 -8.27 16 25 H 0.08 1.47 7.38 -2.39 -0.02 1.46 16 26 H 0.06 1.53 6.86 -2.39 -0.02 1.52 16 27 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.05 1.25 8.14 -2.38 -0.02 1.24 16 29 H 0.06 1.56 6.86 -2.39 -0.02 1.54 16 30 H 0.08 1.51 7.38 -2.39 -0.02 1.49 16 31 H 0.03 1.39 7.51 -2.39 -0.02 1.37 16 32 H 0.03 1.42 7.51 -2.38 -0.02 1.40 16 33 H 0.40 14.62 6.14 -92.71 -0.57 14.05 16 34 H 0.27 15.16 8.29 -92.71 -0.77 14.39 16 35 H 0.13 4.02 5.88 -2.91 -0.02 4.01 16 36 H 0.15 3.23 8.06 -2.91 -0.02 3.20 16 37 H 0.16 2.77 7.09 -2.91 -0.02 2.75 16 38 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 39 H 0.16 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -77.95 323.41 3.33 -74.61 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: 0.52 Total: 27.91 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 4.64 Total: -1.61 kcal Atomic # 7 Polarization: -83.05 SS G_CDS: -2.06 Total: -85.10 kcal Atomic # 8 Polarization: -56.75 SS G_CDS: -1.80 Total: -58.55 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.74 kcal Total: -77.95 3.33 -74.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134169433.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.444 kcal (2) G-P(sol) polarization free energy of solvation -77.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds